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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 500 |
| Acc65I | GGTACC | 1 cut(s) | 667 |
| AccB1I | GGYRCC | 3 cut(s) | 55, 636, 667 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 722 |
| AccII | CGCG | 1 cut(s) | 164 |
| AccIII | TCCGGA | 3 cut(s) | 515, 526, 754 |
| AciI | CCGC | 9 cut(s) | 23, 164, 179, 209, 416, 439, 554, 634, 740 |
| AclWI | GGATC | 7 cut(s) | 507, 518, 526, 544, 706, 746, 759 |
| AcoI | YGGCCR | 1 cut(s) | 433 |
| AcyI | GRCGYC | 2 cut(s) | 497, 637 |
| AfaI | GTAC | 3 cut(s) | 75, 135, 669 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 257, 500, 693, 722, 771 |
| AgeI | ACCGGT | 2 cut(s) | 464, 670 |
| AgsI | TTSAA | 2 cut(s) | 608, 712 |
| AleI | CACNNNNGTG | 1 cut(s) | 187 |
| AluBI | AGCT | 1 cut(s) | 658 |
| AluI | AGCT | 1 cut(s) | 658 |
| Alw21I | GWGCWC | 1 cut(s) | 103 |
| Alw26I | GTCTC | 2 cut(s) | 72, 641 |
| AlwI | GGATC | 7 cut(s) | 507, 518, 526, 544, 706, 746, 759 |
| Aor13HI | TCCGGA | 3 cut(s) | 515, 526, 754 |
| AoxI | GGCC | 3 cut(s) | 324, 433, 451 |
| ApaI | GGGCCC | 1 cut(s) | 455 |
| AseI | ATTAAT | 1 cut(s) | 231 |
| AsiGI | ACCGGT | 2 cut(s) | 464, 670 |
| Asp718I | GGTACC | 1 cut(s) | 667 |
| AspLEI | GCGC | 4 cut(s) | 164, 203, 639, 764 |
| AspS9I | GGNCC | 4 cut(s) | 128, 280, 451, 452 |
| AsuHPI | GGTGA | 4 cut(s) | 520, 608, 634, 754 |
| AvaII | GGWCC | 2 cut(s) | 128, 280 |
| BaeGI | GKGCMC | 3 cut(s) | 60, 397, 455 |
| BamHI | GGATCC | 1 cut(s) | 751 |
| BanI | GGYRCC | 3 cut(s) | 55, 636, 667 |
| BanII | GRGCYC | 1 cut(s) | 455 |
| BbsI | GAAGAC | 2 cut(s) | 23, 467 |
| Bbv12I | GWGCWC | 1 cut(s) | 103 |
| BccI | CCATC | 2 cut(s) | 565, 575 |
| BceAI | ACGGC | 1 cut(s) | 647 |
| BclI | TGATCA | 1 cut(s) | 265 |
| BcoDI | GTCTC | 2 cut(s) | 72, 641 |
| BfoI | RGCGCY | 2 cut(s) | 640, 765 |
| BisI | GCNGC | 1 cut(s) | 635 |
| BlsI | GCNGC | 1 cut(s) | 636 |
| Bme18I | GGWCC | 2 cut(s) | 128, 280 |
| BmgT120I | GGNCC | 4 cut(s) | 128, 280, 451, 452 |
| BmiI | GGNNCC | 9 cut(s) | 57, 129, 291, 342, 453, 615, 638, 669, 753 |
| BmsI | GCATC | 2 cut(s) | 765, 792 |
| BpiI | GAAGAC | 2 cut(s) | 23, 467 |
| BsaBI | GATNNNNATC | 1 cut(s) | 517 |
| BsaHI | GRCGYC | 2 cut(s) | 497, 637 |
| BsaJI | CCNNGG | 2 cut(s) | 182, 534 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 257, 500, 693, 722, 771 |
| Bse118I | RCCGGY | 5 cut(s) | 435, 464, 556, 616, 670 |
| Bse1I | ACTGG | 1 cut(s) | 716 |
| Bse8I | GATNNNNATC | 1 cut(s) | 517 |
| BseAI | TCCGGA | 3 cut(s) | 515, 526, 754 |
| BseDI | CCNNGG | 2 cut(s) | 182, 534 |
| BseGI | GGATG | 2 cut(s) | 576, 780 |
| BseJI | GATNNNNATC | 1 cut(s) | 517 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 257, 500, 693, 722, 771 |
| BseNI | ACTGG | 1 cut(s) | 716 |
| BseRI | GAGGAG | 2 cut(s) | 129, 614 |
| BseSI | GKGCMC | 3 cut(s) | 60, 397, 455 |
| Bsh1236I | CGCG | 1 cut(s) | 164 |
| BshFI | GGCC | 3 cut(s) | 326, 435, 453 |
| BshNI | GGYRCC | 3 cut(s) | 55, 636, 667 |
| BshTI | ACCGGT | 2 cut(s) | 464, 670 |
| BsiHKAI | GWGCWC | 1 cut(s) | 103 |
| BslFI | GGGAC | 2 cut(s) | 161, 669 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 257, 500, 693, 722, 771 |
| BsmAI | GTCTC | 2 cut(s) | 72, 641 |
| BsmBI | CGTCTC | 1 cut(s) | 641 |
| BsmFI | GGGAC | 2 cut(s) | 161, 669 |
| BsnI | GGCC | 3 cut(s) | 326, 435, 453 |
| Bsp120I | GGGCCC | 1 cut(s) | 451 |
| Bsp1286I | GDGCHC | 4 cut(s) | 60, 103, 397, 455 |
| Bsp13I | TCCGGA | 3 cut(s) | 515, 526, 754 |
| Bsp143I | GATC | 7 cut(s) | 265, 512, 518, 523, 549, 698, 751 |
| BspACI | CCGC | 9 cut(s) | 23, 164, 179, 209, 416, 439, 554, 634, 740 |
| BspANI | GGCC | 3 cut(s) | 326, 435, 453 |
| BspEI | TCCGGA | 3 cut(s) | 515, 526, 754 |
| BspFNI | CGCG | 1 cut(s) | 164 |
| BspLI | GGNNCC | 9 cut(s) | 57, 129, 291, 342, 453, 615, 638, 669, 753 |
| BspPI | GGATC | 7 cut(s) | 507, 518, 526, 544, 706, 746, 759 |
| BspT107I | GGYRCC | 3 cut(s) | 55, 636, 667 |
| BsrFI | RCCGGY | 5 cut(s) | 435, 464, 556, 616, 670 |
| BsrI | ACTGG | 1 cut(s) | 716 |
| BssAI | RCCGGY | 5 cut(s) | 435, 464, 556, 616, 670 |
| BssECI | CCNNGG | 2 cut(s) | 182, 534 |
| BssMI | GATC | 7 cut(s) | 265, 512, 518, 523, 549, 698, 751 |
| BssNI | GRCGYC | 2 cut(s) | 497, 637 |
| Bst4CI | ACNGT | 1 cut(s) | 423 |
| Bst6I | CTCTTC | 2 cut(s) | 375, 534 |
| BstACI | GRCGYC | 2 cut(s) | 497, 637 |
| BstC8I | GCNNGC | 3 cut(s) | 298, 437, 641 |
| BstDEI | CTNAG | 1 cut(s) | 659 |
| BstDSI | CCRYGG | 1 cut(s) | 182 |
| BstF5I | GGATG | 2 cut(s) | 576, 780 |
| BstFNI | CGCG | 1 cut(s) | 164 |
| BstH2I | RGCGCY | 2 cut(s) | 640, 765 |
| BstHHI | GCGC | 4 cut(s) | 164, 203, 639, 764 |
| BstKTI | GATC | 7 cut(s) | 268, 515, 521, 526, 552, 701, 754 |
| BstMAI | GTCTC | 2 cut(s) | 72, 641 |
| BstMBI | GATC | 7 cut(s) | 265, 512, 518, 523, 549, 698, 751 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 640 |
| BstNSI | RCATGY | 1 cut(s) | 300 |
| BstSLI | GKGCMC | 3 cut(s) | 60, 397, 455 |
| BstUI | CGCG | 1 cut(s) | 164 |
| BstV2I | GAAGAC | 2 cut(s) | 23, 467 |
| BstX2I | RGATCY | 3 cut(s) | 512, 523, 751 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 189 |
| BstYI | RGATCY | 3 cut(s) | 512, 523, 751 |
| BsuRI | GGCC | 3 cut(s) | 326, 435, 453 |
| BtgI | CCRYGG | 1 cut(s) | 182 |
| BtsCI | GGATG | 2 cut(s) | 576, 780 |
| Cac8I | GCNNGC | 3 cut(s) | 298, 437, 641 |
| CfoI | GCGC | 4 cut(s) | 164, 203, 639, 764 |
| Cfr10I | RCCGGY | 5 cut(s) | 435, 464, 556, 616, 670 |
| Cfr13I | GGNCC | 4 cut(s) | 128, 280, 451, 452 |
| Csp6I | GTAC | 3 cut(s) | 74, 134, 668 |
| CspAI | ACCGGT | 2 cut(s) | 464, 670 |
| CviAII | CATG | 2 cut(s) | 297, 547 |
| CviQI | GTAC | 3 cut(s) | 74, 134, 668 |
| DdeI | CTNAG | 1 cut(s) | 659 |
| DinI | GGCGCC | 1 cut(s) | 638 |
| DpnI | GATC | 7 cut(s) | 267, 514, 520, 525, 551, 700, 753 |
| DpnII | GATC | 7 cut(s) | 265, 512, 518, 523, 549, 698, 751 |
| EaeI | YGGCCR | 1 cut(s) | 433 |
| Eam1104I | CTCTTC | 2 cut(s) | 375, 534 |
| EarI | CTCTTC | 2 cut(s) | 375, 534 |
| EciI | GGCGGA | 2 cut(s) | 38, 431 |
| Eco24I | GRGCYC | 1 cut(s) | 455 |
| Eco47I | GGWCC | 2 cut(s) | 128, 280 |
| EcoO109I | RGGNCCY | 2 cut(s) | 280, 452 |
| EcoT38I | GRGCYC | 1 cut(s) | 455 |
| EgeI | GGCGCC | 1 cut(s) | 638 |
| EheI | GGCGCC | 1 cut(s) | 638 |
| Esp3I | CGTCTC | 1 cut(s) | 641 |
| FaeI | CATG | 2 cut(s) | 300, 550 |
| FaiI | YATR | 7 cut(s) | 46, 48, 273, 298, 506, 548, 707 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 372, 404 |
| FaqI | GGGAC | 2 cut(s) | 161, 669 |
| FatI | CATG | 2 cut(s) | 296, 546 |
| FauI | CCCGC | 2 cut(s) | 186, 561 |
| FauNDI | CATATG | 1 cut(s) | 46 |
| FbaI | TGATCA | 1 cut(s) | 265 |
| Fnu4HI | GCNGC | 1 cut(s) | 635 |
| FokI | GGATG | 2 cut(s) | 583, 787 |
| FriOI | GRGCYC | 1 cut(s) | 455 |
| Fsp4HI | GCNGC | 1 cut(s) | 635 |
| GlaI | GCGC | 4 cut(s) | 163, 202, 638, 763 |
| GluI | GCNGC | 1 cut(s) | 635 |
| HaeII | RGCGCY | 2 cut(s) | 640, 765 |
| HaeIII | GGCC | 3 cut(s) | 326, 435, 453 |
| HhaI | GCGC | 4 cut(s) | 164, 203, 639, 764 |
| Hin1I | GRCGYC | 2 cut(s) | 497, 637 |
| Hin1II | CATG | 2 cut(s) | 300, 550 |
| Hin6I | GCGC | 4 cut(s) | 162, 201, 637, 762 |
| HinP1I | GCGC | 4 cut(s) | 162, 201, 637, 762 |
| HinfI | GANTC | 2 cut(s) | 155, 530 |
| HphI | GGTGA | 4 cut(s) | 520, 608, 634, 754 |
| Hpy166II | GTNNAC | 1 cut(s) | 796 |
| Hpy188I | TCNGA | 6 cut(s) | 225, 306, 340, 523, 535, 790 |
| Hpy188III | TCNNGA | 5 cut(s) | 493, 516, 527, 755, 804 |
| Hpy8I | GTNNAC | 1 cut(s) | 796 |
| Hpy99I | CGWCG | 2 cut(s) | 499, 633 |
| HpyAV | CCTTC | 1 cut(s) | 248 |
| HpyCH4III | ACNGT | 1 cut(s) | 423 |
| HpyCH4IV | ACGT | 1 cut(s) | 497 |
| HpyCH4V | TGCA | 3 cut(s) | 10, 300, 368 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 640 |
| HpyF3I | CTNAG | 1 cut(s) | 659 |
| HpySE526I | ACGT | 1 cut(s) | 497 |
| Hsp92I | GRCGYC | 2 cut(s) | 497, 637 |
| Hsp92II | CATG | 2 cut(s) | 300, 550 |
| HspAI | GCGC | 4 cut(s) | 162, 201, 637, 762 |
| KasI | GGCGCC | 1 cut(s) | 636 |
| Kpn2I | TCCGGA | 3 cut(s) | 515, 526, 754 |
| KpnI | GGTACC | 1 cut(s) | 671 |
| KroI | GCCGGC | 1 cut(s) | 435 |
| KroNI | GCCGGC | 1 cut(s) | 437 |
| Ksp22I | TGATCA | 1 cut(s) | 265 |
| Kzo9I | GATC | 7 cut(s) | 265, 512, 518, 523, 549, 698, 751 |
| LmnI | GCTCC | 2 cut(s) | 340, 613 |
| LweI | GCATC | 2 cut(s) | 765, 792 |
| MaeII | ACGT | 1 cut(s) | 497 |
| MalI | GATC | 7 cut(s) | 267, 514, 520, 525, 551, 700, 753 |
| MboI | GATC | 7 cut(s) | 265, 512, 518, 523, 549, 698, 751 |
| MboII | GAAGA | 4 cut(s) | 23, 392, 472, 551 |
| MfeI | CAATTG | 1 cut(s) | 608 |
| MflI | RGATCY | 3 cut(s) | 512, 523, 751 |
| MhlI | GDGCHC | 4 cut(s) | 60, 103, 397, 455 |
| MluCI | AATT | 4 cut(s) | 228, 608, 720, 799 |
| Mly113I | GGCGCC | 1 cut(s) | 637 |
| MlyI | GAGTC | 1 cut(s) | 539 |
| MmeI | TCCRAC | 1 cut(s) | 203 |
| MroI | TCCGGA | 3 cut(s) | 515, 526, 754 |
| MroNI | GCCGGC | 1 cut(s) | 435 |
| MseI | TTAA | 1 cut(s) | 231 |
| MslI | CAYNNNNRTG | 1 cut(s) | 187 |
| MunI | CAATTG | 1 cut(s) | 608 |
| MvnI | CGCG | 1 cut(s) | 164 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 640 |
| NaeI | GCCGGC | 1 cut(s) | 437 |
| NarI | GGCGCC | 1 cut(s) | 637 |
| NdeI | CATATG | 1 cut(s) | 46 |
| NdeII | GATC | 7 cut(s) | 265, 512, 518, 523, 549, 698, 751 |
| NgoMIV | GCCGGC | 1 cut(s) | 435 |
| NlaIII | CATG | 2 cut(s) | 300, 550 |
| NlaIV | GGNNCC | 9 cut(s) | 57, 129, 291, 342, 453, 615, 638, 669, 753 |
| NmeAIII | GCCGAG | 1 cut(s) | 332 |
| NspI | RCATGY | 1 cut(s) | 300 |
| OliI | CACNNNNGTG | 1 cut(s) | 187 |
| PaeI | GCATGC | 1 cut(s) | 300 |
| PdiI | GCCGGC | 1 cut(s) | 437 |
| PfeI | GAWTC | 1 cut(s) | 155 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 722 |
| PinAI | ACCGGT | 2 cut(s) | 464, 670 |
| PkrI | GCNGC | 1 cut(s) | 636 |
| PleI | GAGTC | 1 cut(s) | 538 |
| PluTI | GGCGCC | 1 cut(s) | 640 |
| PpsI | GAGTC | 1 cut(s) | 538 |
| PpuMI | RGGWCCY | 1 cut(s) | 280 |
| PshBI | ATTAAT | 1 cut(s) | 231 |
| Psp5II | RGGWCCY | 1 cut(s) | 280 |
| PspN4I | GGNNCC | 9 cut(s) | 57, 129, 291, 342, 453, 615, 638, 669, 753 |
| PspOMI | GGGCCC | 1 cut(s) | 451 |
| PspPI | GGNCC | 4 cut(s) | 128, 280, 451, 452 |
| PspPPI | RGGWCCY | 1 cut(s) | 280 |
| PsuI | RGATCY | 3 cut(s) | 512, 523, 751 |
| RsaI | GTAC | 3 cut(s) | 75, 135, 669 |
| RsaNI | GTAC | 3 cut(s) | 74, 134, 668 |
| RseI | CAYNNNNRTG | 1 cut(s) | 187 |
| SaqAI | TTAA | 1 cut(s) | 231 |
| SatI | GCNGC | 1 cut(s) | 635 |
| Sau3AI | GATC | 7 cut(s) | 265, 512, 518, 523, 549, 698, 751 |
| Sau96I | GGNCC | 4 cut(s) | 128, 280, 451, 452 |
| SchI | GAGTC | 1 cut(s) | 539 |
| SduI | GDGCHC | 4 cut(s) | 60, 103, 397, 455 |
| SetI | ASST | 9 cut(s) | 121, 174, 191, 248, 282, 500, 606, 660, 669 |
| SfaNI | GCATC | 2 cut(s) | 765, 792 |
| SfoI | GGCGCC | 1 cut(s) | 638 |
| SinI | GGWCC | 2 cut(s) | 128, 280 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 187 |
| SphI | GCATGC | 1 cut(s) | 300 |
| Sse9I | AATT | 4 cut(s) | 228, 608, 720, 799 |
| SsiI | CCGC | 9 cut(s) | 23, 164, 179, 209, 416, 439, 554, 634, 740 |
| SspDI | GGCGCC | 1 cut(s) | 636 |
| TaaI | ACNGT | 1 cut(s) | 423 |
| TaiI | ACGT | 1 cut(s) | 500 |
| TasI | AATT | 4 cut(s) | 228, 608, 720, 799 |
| TauI | GCSGC | 1 cut(s) | 637 |
| TfiI | GAWTC | 1 cut(s) | 155 |
| Tru1I | TTAA | 1 cut(s) | 231 |
| Tru9I | TTAA | 1 cut(s) | 231 |
| TspGWI | ACGGA | 1 cut(s) | 199 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 722 |
| VpaK11BI | GGWCC | 2 cut(s) | 128, 280 |
| VspI | ATTAAT | 1 cut(s) | 231 |
| XceI | RCATGY | 1 cut(s) | 300 |
| ZraI | GACGTC | 1 cut(s) | 498 |