ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 166 |
| AccII | CGCG | 4 cut(s) | 113, 368, 749, 972 |
| AciI | CCGC | 5 cut(s) | 113, 166, 749, 910, 972 |
| AclWI | GGATC | 5 cut(s) | 137, 150, 461, 486, 1403 |
| AcoI | YGGCCR | 1 cut(s) | 159 |
| AcsI | RAATTY | 3 cut(s) | 534, 757, 1016 |
| AcuI | CTGAAG | 1 cut(s) | 1116 |
| AdeI | CACNNNGTG | 1 cut(s) | 881 |
| AfaI | GTAC | 2 cut(s) | 730, 1141 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 112, 392, 393, 1254, 1328, 1348 |
| AgsI | TTSAA | 5 cut(s) | 638, 782, 937, 1730, 1885 |
| AjiI | CACGTC | 2 cut(s) | 73, 694 |
| AjnI | CCWGG | 2 cut(s) | 1346, 1541 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1054, 1086 |
| AluBI | AGCT | 5 cut(s) | 560, 724, 818, 1205, 1734 |
| AluI | AGCT | 5 cut(s) | 560, 724, 818, 1205, 1734 |
| Alw26I | GTCTC | 3 cut(s) | 1285, 1330, 1511 |
| AlwI | GGATC | 5 cut(s) | 137, 150, 461, 486, 1403 |
| AoxI | GGCC | 2 cut(s) | 159, 1457 |
| ApoI | RAATTY | 3 cut(s) | 534, 757, 1016 |
| AseI | ATTAAT | 1 cut(s) | 609 |
| AspLEI | GCGC | 4 cut(s) | 370, 379, 749, 972 |
| AspS9I | GGNCC | 5 cut(s) | 36, 769, 1106, 1354, 1529 |
| AsuII | TTCGAA | 1 cut(s) | 194 |
| AvaII | GGWCC | 5 cut(s) | 36, 769, 1106, 1354, 1529 |
| BaeGI | GKGCMC | 1 cut(s) | 1868 |
| BamHI | GGATCC | 1 cut(s) | 142 |
| BanII | GRGCYC | 1 cut(s) | 350 |
| BbsI | GAAGAC | 2 cut(s) | 801, 1456 |
| BbvCI | CCTCAGC | 1 cut(s) | 1461 |
| BccI | CCATC | 5 cut(s) | 58, 151, 386, 1662, 1786 |
| BceAI | ACGGC | 2 cut(s) | 664, 1709 |
| BciT130I | CCWGG | 2 cut(s) | 1348, 1543 |
| BcoDI | GTCTC | 3 cut(s) | 1285, 1330, 1511 |
| BfaI | CTAG | 5 cut(s) | 1008, 1074, 1131, 1634, 1679 |
| BfoI | RGCGCY | 1 cut(s) | 380 |
| Bme1390I | CCNGG | 2 cut(s) | 1348, 1543 |
| Bme18I | GGWCC | 5 cut(s) | 36, 769, 1106, 1354, 1529 |
| BmgBI | CACGTC | 2 cut(s) | 73, 694 |
| BmgT120I | GGNCC | 5 cut(s) | 36, 769, 1106, 1354, 1529 |
| BmiI | GGNNCC | 5 cut(s) | 144, 347, 771, 1107, 1108 |
| BmrFI | CCNGG | 2 cut(s) | 1348, 1543 |
| BmrI | ACTGGG | 2 cut(s) | 767, 1314 |
| BmsI | GCATC | 4 cut(s) | 25, 585, 1111, 1474 |
| BmuI | ACTGGG | 2 cut(s) | 767, 1314 |
| BpiI | GAAGAC | 2 cut(s) | 801, 1456 |
| BpmI | CTGGAG | 2 cut(s) | 576, 1564 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1461, 1743 |
| Bpu14I | TTCGAA | 1 cut(s) | 194 |
| BpuEI | CTTGAG | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 4 cut(s) | 350, 1347, 1383, 1873 |
| BsaWI | WCCGGW | 2 cut(s) | 198, 826 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 407, 437, 505, 535 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 112, 392, 393, 1254, 1328, 1348 |
| Bse1I | ACTGG | 4 cut(s) | 559, 773, 1309, 1333 |
| Bse3DI | GCAATG | 2 cut(s) | 904, 1131 |
| BseBI | CCWGG | 2 cut(s) | 1348, 1543 |
| BseDI | CCNNGG | 4 cut(s) | 350, 1347, 1383, 1873 |
| BseGI | GGATG | 4 cut(s) | 121, 1393, 1435, 1797 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 112, 392, 393, 1254, 1328, 1348 |
| BseMI | GCAATG | 2 cut(s) | 904, 1131 |
| BseMII | CTCAG | 3 cut(s) | 402, 1475, 1820 |
| BseNI | ACTGG | 4 cut(s) | 559, 773, 1309, 1333 |
| BseRI | GAGGAG | 3 cut(s) | 596, 605, 1448 |
| BseSI | GKGCMC | 1 cut(s) | 1868 |
| BseYI | CCCAGC | 1 cut(s) | 1058 |
| BsgI | GTGCAG | 1 cut(s) | 1464 |
| Bsh1236I | CGCG | 4 cut(s) | 113, 368, 749, 972 |
| BshFI | GGCC | 2 cut(s) | 161, 1459 |
| BsiSI | CCGG | 2 cut(s) | 199, 827 |
| BslFI | GGGAC | 3 cut(s) | 755, 1119, 1812 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 112, 392, 393, 1254, 1328, 1348 |
| BsmAI | GTCTC | 3 cut(s) | 1285, 1330, 1511 |
| BsmFI | GGGAC | 3 cut(s) | 755, 1119, 1812 |
| BsnI | GGCC | 2 cut(s) | 161, 1459 |
| Bsp119I | TTCGAA | 1 cut(s) | 194 |
| Bsp1286I | GDGCHC | 2 cut(s) | 350, 1868 |
| Bsp143I | GATC | 6 cut(s) | 142, 466, 491, 616, 1395, 1750 |
| Bsp19I | CCATGG | 1 cut(s) | 1383 |
| BspACI | CCGC | 5 cut(s) | 113, 166, 749, 910, 972 |
| BspANI | GGCC | 2 cut(s) | 161, 1459 |
| BspCNI | CTCAG | 3 cut(s) | 401, 1474, 1821 |
| BspFNI | CGCG | 4 cut(s) | 113, 368, 749, 972 |
| BspLI | GGNNCC | 5 cut(s) | 144, 347, 771, 1107, 1108 |
| BspPI | GGATC | 5 cut(s) | 137, 150, 461, 486, 1403 |
| BspT104I | TTCGAA | 1 cut(s) | 194 |
| BsrBI | CCGCTC | 1 cut(s) | 166 |
| BsrDI | GCAATG | 2 cut(s) | 904, 1131 |
| BsrI | ACTGG | 4 cut(s) | 559, 773, 1309, 1333 |
| BssECI | CCNNGG | 4 cut(s) | 350, 1347, 1383, 1873 |
| BssMI | GATC | 6 cut(s) | 142, 466, 491, 616, 1395, 1750 |
| BssT1I | CCWWGG | 3 cut(s) | 350, 1383, 1873 |
| Bst2UI | CCWGG | 2 cut(s) | 1348, 1543 |
| Bst4CI | ACNGT | 3 cut(s) | 136, 444, 1479 |
| Bst6I | CTCTTC | 2 cut(s) | 573, 1433 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 334 |
| BstBI | TTCGAA | 1 cut(s) | 194 |
| BstC8I | GCNNGC | 2 cut(s) | 381, 1712 |
| BstDEI | CTNAG | 6 cut(s) | 388, 1035, 1461, 1743, 1811, 1829 |
| BstDSI | CCRYGG | 1 cut(s) | 1383 |
| BstF5I | GGATG | 4 cut(s) | 121, 1393, 1435, 1797 |
| BstFNI | CGCG | 4 cut(s) | 113, 368, 749, 972 |
| BstH2I | RGCGCY | 1 cut(s) | 380 |
| BstHHI | GCGC | 4 cut(s) | 370, 379, 749, 972 |
| BstKTI | GATC | 6 cut(s) | 145, 469, 494, 619, 1398, 1753 |
| BstMAI | GTCTC | 3 cut(s) | 1285, 1330, 1511 |
| BstMBI | GATC | 6 cut(s) | 142, 466, 491, 616, 1395, 1750 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 172, 334, 374, 376 |
| BstNI | CCWGG | 2 cut(s) | 1348, 1543 |
| BstSCI | CCNGG | 2 cut(s) | 1346, 1541 |
| BstSLI | GKGCMC | 1 cut(s) | 1868 |
| BstUI | CGCG | 4 cut(s) | 113, 368, 749, 972 |
| BstV2I | GAAGAC | 2 cut(s) | 801, 1456 |
| BstX2I | RGATCY | 1 cut(s) | 142 |
| BstYI | RGATCY | 1 cut(s) | 142 |
| BsuRI | GGCC | 2 cut(s) | 161, 1459 |
| BtgI | CCRYGG | 1 cut(s) | 1383 |
| BtrI | CACGTC | 2 cut(s) | 73, 694 |
| BtsCI | GGATG | 4 cut(s) | 121, 1393, 1435, 1797 |
| BtsIMutI | CAGTG | 3 cut(s) | 141, 440, 1760 |
| Cac8I | GCNNGC | 2 cut(s) | 381, 1712 |
| CfoI | GCGC | 4 cut(s) | 370, 379, 749, 972 |
| Cfr13I | GGNCC | 5 cut(s) | 36, 769, 1106, 1354, 1529 |
| CseI | GACGC | 1 cut(s) | 119 |
| Csp6I | GTAC | 2 cut(s) | 729, 1140 |
| CviAII | CATG | 5 cut(s) | 107, 704, 1270, 1384, 1622 |
| CviQI | GTAC | 2 cut(s) | 729, 1140 |
| DdeI | CTNAG | 6 cut(s) | 388, 1035, 1461, 1743, 1811, 1829 |
| DpnI | GATC | 6 cut(s) | 144, 468, 493, 618, 1397, 1752 |
| DpnII | GATC | 6 cut(s) | 142, 466, 491, 616, 1395, 1750 |
| DraI | TTTAAA | 1 cut(s) | 1587 |
| DraIII | CACNNNGTG | 1 cut(s) | 881 |
| EaeI | YGGCCR | 1 cut(s) | 159 |
| Eam1104I | CTCTTC | 2 cut(s) | 573, 1433 |
| EarI | CTCTTC | 2 cut(s) | 573, 1433 |
| EciI | GGCGGA | 1 cut(s) | 925 |
| Eco130I | CCWWGG | 3 cut(s) | 350, 1383, 1873 |
| Eco24I | GRGCYC | 1 cut(s) | 350 |
| Eco47I | GGWCC | 5 cut(s) | 36, 769, 1106, 1354, 1529 |
| Eco57I | CTGAAG | 1 cut(s) | 1116 |
| EcoO109I | RGGNCCY | 4 cut(s) | 769, 1106, 1354, 1529 |
| EcoRII | CCWGG | 2 cut(s) | 1346, 1541 |
| EcoT14I | CCWWGG | 3 cut(s) | 350, 1383, 1873 |
| EcoT22I | ATGCAT | 1 cut(s) | 705 |
| EcoT38I | GRGCYC | 1 cut(s) | 350 |
| ErhI | CCWWGG | 3 cut(s) | 350, 1383, 1873 |
| FaeI | CATG | 5 cut(s) | 110, 707, 1273, 1387, 1625 |
| FaqI | GGGAC | 3 cut(s) | 755, 1119, 1812 |
| FatI | CATG | 5 cut(s) | 106, 703, 1269, 1383, 1621 |
| FauI | CCCGC | 1 cut(s) | 965 |
| FokI | GGATG | 4 cut(s) | 128, 1400, 1442, 1804 |
| FriOI | GRGCYC | 1 cut(s) | 350 |
| FspBI | CTAG | 5 cut(s) | 1008, 1074, 1131, 1634, 1679 |
| GlaI | GCGC | 4 cut(s) | 369, 378, 748, 971 |
| GsaI | CCCAGC | 1 cut(s) | 1062 |
| GsuI | CTGGAG | 2 cut(s) | 576, 1564 |
| HaeII | RGCGCY | 1 cut(s) | 380 |
| HaeIII | GGCC | 2 cut(s) | 161, 1459 |
| HapII | CCGG | 2 cut(s) | 199, 827 |
| HgaI | GACGC | 1 cut(s) | 119 |
| HhaI | GCGC | 4 cut(s) | 370, 379, 749, 972 |
| Hin1II | CATG | 5 cut(s) | 110, 707, 1273, 1387, 1625 |
| Hin6I | GCGC | 4 cut(s) | 368, 377, 747, 970 |
| HinP1I | GCGC | 4 cut(s) | 368, 377, 747, 970 |
| HincII | GTYRAC | 1 cut(s) | 1234 |
| HindII | GTYRAC | 1 cut(s) | 1234 |
| HindIII | AAGCTT | 1 cut(s) | 1732 |
| HinfI | GANTC | 6 cut(s) | 215, 284, 707, 1244, 1699, 1800 |
| HpaII | CCGG | 2 cut(s) | 199, 827 |
| Hpy166II | GTNNAC | 6 cut(s) | 36, 208, 729, 1226, 1234, 1539 |
| Hpy188I | TCNGA | 6 cut(s) | 391, 471, 504, 922, 1323, 1564 |
| Hpy188III | TCNNGA | 5 cut(s) | 55, 223, 272, 566, 1634 |
| Hpy8I | GTNNAC | 6 cut(s) | 36, 208, 729, 1226, 1234, 1539 |
| Hpy99I | CGWCG | 3 cut(s) | 96, 253, 1365 |
| HpyAV | CCTTC | 8 cut(s) | 231, 247, 423, 776, 920, 1210, 1367, 1879 |
| HpyCH4III | ACNGT | 3 cut(s) | 136, 444, 1479 |
| HpyCH4IV | ACGT | 4 cut(s) | 72, 693, 1236, 1868 |
| HpyCH4V | TGCA | 8 cut(s) | 16, 605, 703, 946, 1124, 1269, 1445, 1839 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 172, 334, 374, 376 |
| HpyF3I | CTNAG | 6 cut(s) | 388, 1035, 1461, 1743, 1811, 1829 |
| HpySE526I | ACGT | 4 cut(s) | 72, 693, 1236, 1868 |
| Hsp92II | CATG | 5 cut(s) | 110, 707, 1273, 1387, 1625 |
| HspAI | GCGC | 4 cut(s) | 368, 377, 747, 970 |
| KflI | GGGWCCC | 1 cut(s) | 1106 |
| Kzo9I | GATC | 6 cut(s) | 142, 466, 491, 616, 1395, 1750 |
| LmnI | GCTCC | 3 cut(s) | 345, 388, 557 |
| LweI | GCATC | 4 cut(s) | 25, 585, 1111, 1474 |
| MaeI | CTAG | 5 cut(s) | 1008, 1074, 1131, 1634, 1679 |
| MaeII | ACGT | 4 cut(s) | 72, 693, 1236, 1868 |
| MaeIII | GTNAC | 8 cut(s) | 644, 694, 829, 1273, 1300, 1649, 1689, 1760 |
| MalI | GATC | 6 cut(s) | 144, 468, 493, 618, 1397, 1752 |
| MbiI | CCGCTC | 1 cut(s) | 166 |
| MboI | GATC | 6 cut(s) | 142, 466, 491, 616, 1395, 1750 |
| MboII | GAAGA | 8 cut(s) | 73, 269, 590, 801, 1450, 1461, 1649, 1760 |
| MflI | RGATCY | 1 cut(s) | 142 |
| MhlI | GDGCHC | 2 cut(s) | 350, 1868 |
| MluCI | AATT | 9 cut(s) | 407, 479, 534, 606, 610, 666, 757, 1016, 1880 |
| MlyI | GAGTC | 4 cut(s) | 224, 701, 1693, 1794 |
| MmeI | TCCRAC | 4 cut(s) | 102, 378, 718, 1346 |
| Mph1103I | ATGCAT | 1 cut(s) | 705 |
| MseI | TTAA | 9 cut(s) | 309, 410, 609, 626, 903, 1155, 1413, 1586, 1706 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1635 |
| MspI | CCGG | 2 cut(s) | 199, 827 |
| MspR9I | CCNGG | 2 cut(s) | 1348, 1543 |
| MvaI | CCWGG | 2 cut(s) | 1348, 1543 |
| MvnI | CGCG | 4 cut(s) | 113, 368, 749, 972 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 172, 334, 374, 376 |
| NcoI | CCATGG | 1 cut(s) | 1383 |
| NdeII | GATC | 6 cut(s) | 142, 466, 491, 616, 1395, 1750 |
| NlaIII | CATG | 5 cut(s) | 110, 707, 1273, 1387, 1625 |
| NlaIV | GGNNCC | 5 cut(s) | 144, 347, 771, 1107, 1108 |
| NmeAIII | GCCGAG | 1 cut(s) | 187 |
| NmuCI | GTSAC | 6 cut(s) | 644, 694, 829, 1273, 1649, 1760 |
| NsiI | ATGCAT | 1 cut(s) | 705 |
| NspV | TTCGAA | 1 cut(s) | 194 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 467 |
| PfeI | GAWTC | 2 cut(s) | 284, 1244 |
| PflFI | GACNNNGTC | 1 cut(s) | 1766 |
| PleI | GAGTC | 4 cut(s) | 223, 701, 1693, 1794 |
| PpsI | GAGTC | 4 cut(s) | 223, 701, 1693, 1794 |
| PpuMI | RGGWCCY | 4 cut(s) | 769, 1106, 1354, 1529 |
| PshBI | ATTAAT | 1 cut(s) | 609 |
| Psp5II | RGGWCCY | 4 cut(s) | 769, 1106, 1354, 1529 |
| Psp6I | CCWGG | 2 cut(s) | 1346, 1541 |
| PspFI | CCCAGC | 1 cut(s) | 1058 |
| PspGI | CCWGG | 2 cut(s) | 1346, 1541 |
| PspN4I | GGNNCC | 5 cut(s) | 144, 347, 771, 1107, 1108 |
| PspPI | GGNCC | 5 cut(s) | 36, 769, 1106, 1354, 1529 |
| PspPPI | RGGWCCY | 4 cut(s) | 769, 1106, 1354, 1529 |
| PsuI | RGATCY | 1 cut(s) | 142 |
| PsyI | GACNNNGTC | 1 cut(s) | 1766 |
| RsaI | GTAC | 2 cut(s) | 730, 1141 |
| RsaNI | GTAC | 2 cut(s) | 729, 1140 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1635 |
| SaqAI | TTAA | 9 cut(s) | 309, 410, 609, 626, 903, 1155, 1413, 1586, 1706 |
| Sau3AI | GATC | 6 cut(s) | 142, 466, 491, 616, 1395, 1750 |
| Sau96I | GGNCC | 5 cut(s) | 36, 769, 1106, 1354, 1529 |
| SchI | GAGTC | 4 cut(s) | 224, 701, 1693, 1794 |
| ScrFI | CCNGG | 2 cut(s) | 1348, 1543 |
| SduI | GDGCHC | 2 cut(s) | 350, 1868 |
| SfaNI | GCATC | 4 cut(s) | 25, 585, 1111, 1474 |
| SfuI | TTCGAA | 1 cut(s) | 194 |
| SinI | GGWCC | 5 cut(s) | 36, 769, 1106, 1354, 1529 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1635 |
| SmlI | CTYRAG | 1 cut(s) | 55 |
| SmoI | CTYRAG | 1 cut(s) | 55 |
| Sse9I | AATT | 9 cut(s) | 407, 479, 534, 606, 610, 666, 757, 1016, 1880 |
| SsiI | CCGC | 5 cut(s) | 113, 166, 749, 910, 972 |
| SspI | AATATT | 1 cut(s) | 229 |
| SspMI | CTAG | 5 cut(s) | 1008, 1074, 1131, 1634, 1679 |
| StyD4I | CCNGG | 2 cut(s) | 1346, 1541 |
| StyI | CCWWGG | 3 cut(s) | 350, 1383, 1873 |
| TaaI | ACNGT | 3 cut(s) | 136, 444, 1479 |
| TaiI | ACGT | 4 cut(s) | 75, 696, 1239, 1871 |
| TaqI | TCGA | 7 cut(s) | 194, 292, 360, 461, 653, 870, 1297 |
| TasI | AATT | 9 cut(s) | 407, 479, 534, 606, 610, 666, 757, 1016, 1880 |
| TatI | WGTACW | 1 cut(s) | 1139 |
| TfiI | GAWTC | 2 cut(s) | 284, 1244 |
| Tru1I | TTAA | 9 cut(s) | 309, 410, 609, 626, 903, 1155, 1413, 1586, 1706 |
| Tru9I | TTAA | 9 cut(s) | 309, 410, 609, 626, 903, 1155, 1413, 1586, 1706 |
| TscAI | CASTG | 3 cut(s) | 141, 447, 1760 |
| TseFI | GTSAC | 6 cut(s) | 644, 694, 829, 1273, 1649, 1760 |
| Tsp45I | GTSAC | 6 cut(s) | 644, 694, 829, 1273, 1649, 1760 |
| TspDTI | ATGAA | 3 cut(s) | 545, 939, 1619 |
| TspGWI | ACGGA | 2 cut(s) | 428, 1692 |
| TspRI | CASTG | 3 cut(s) | 141, 447, 1760 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1766 |
| VpaK11BI | GGWCC | 5 cut(s) | 36, 769, 1106, 1354, 1529 |
| VspI | ATTAAT | 1 cut(s) | 609 |
| XapI | RAATTY | 3 cut(s) | 534, 757, 1016 |
| XbaI | TCTAGA | 1 cut(s) | 1633 |
| XspI | CTAG | 5 cut(s) | 1008, 1074, 1131, 1634, 1679 |
| Zsp2I | ATGCAT | 1 cut(s) | 705 |