ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 38 - 106 | 1.1e-10 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 84, 103 |
| AclWI | GGATC | 2 cut(s) | 74, 87 |
| AcuI | CTGAAG | 1 cut(s) | 191 |
| AfeI | AGCGCT | 1 cut(s) | 90 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 49 |
| AgsI | TTSAA | 2 cut(s) | 247, 323 |
| AjnI | CCWGG | 1 cut(s) | 287 |
| Alw26I | GTCTC | 3 cut(s) | 338, 358, 413 |
| AlwI | GGATC | 2 cut(s) | 74, 87 |
| Ama87I | CYCGRG | 1 cut(s) | 469 |
| Aor51HI | AGCGCT | 1 cut(s) | 90 |
| ApeKI | GCWGC | 2 cut(s) | 86, 358 |
| AspLEI | GCGC | 1 cut(s) | 91 |
| AspS9I | GGNCC | 1 cut(s) | 124 |
| AsuC2I | CCSGG | 3 cut(s) | 345, 470, 471 |
| AsuHPI | GGTGA | 1 cut(s) | 269 |
| AsuII | TTCGAA | 1 cut(s) | 504 |
| AvaI | CYCGRG | 1 cut(s) | 469 |
| AvaII | GGWCC | 1 cut(s) | 124 |
| BamHI | GGATCC | 1 cut(s) | 79 |
| BbvI | GCAGC | 2 cut(s) | 98, 345 |
| BccI | CCATC | 3 cut(s) | 47, 248, 323 |
| BceAI | ACGGC | 1 cut(s) | 44 |
| BciT130I | CCWGG | 1 cut(s) | 289 |
| BcnI | CCSGG | 3 cut(s) | 345, 470, 471 |
| BcoDI | GTCTC | 3 cut(s) | 338, 358, 413 |
| BfaI | CTAG | 1 cut(s) | 362 |
| BfoI | RGCGCY | 1 cut(s) | 92 |
| BisI | GCNGC | 2 cut(s) | 87, 359 |
| BlsI | GCNGC | 2 cut(s) | 88, 360 |
| Bme1390I | CCNGG | 4 cut(s) | 289, 345, 470, 471 |
| Bme18I | GGWCC | 1 cut(s) | 124 |
| BmeT110I | CYCGRG | 1 cut(s) | 469 |
| BmgT120I | GGNCC | 1 cut(s) | 124 |
| BmiI | GGNNCC | 1 cut(s) | 81 |
| BmrFI | CCNGG | 4 cut(s) | 289, 345, 470, 471 |
| Bpu14I | TTCGAA | 1 cut(s) | 504 |
| BpuMI | CCSGG | 3 cut(s) | 345, 470, 471 |
| BsaBI | GATNNNNATC | 1 cut(s) | 258 |
| BsaI | GGTCTC | 2 cut(s) | 338, 358 |
| BsaJI | CCNNGG | 3 cut(s) | 287, 469, 470 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 441, 471 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 49 |
| Bse1I | ACTGG | 1 cut(s) | 63 |
| Bse8I | GATNNNNATC | 1 cut(s) | 258 |
| BseBI | CCWGG | 1 cut(s) | 289 |
| BseDI | CCNNGG | 3 cut(s) | 287, 469, 470 |
| BseGI | GGATG | 1 cut(s) | 39 |
| BseJI | GATNNNNATC | 1 cut(s) | 258 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 49 |
| BseNI | ACTGG | 1 cut(s) | 63 |
| BseRI | GAGGAG | 3 cut(s) | 20, 65, 431 |
| BseXI | GCAGC | 2 cut(s) | 98, 345 |
| BsiHKCI | CYCGRG | 1 cut(s) | 469 |
| BsiSI | CCGG | 2 cut(s) | 345, 470 |
| BslFI | GGGAC | 1 cut(s) | 270 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 49 |
| BsmAI | GTCTC | 3 cut(s) | 338, 358, 413 |
| BsmBI | CGTCTC | 1 cut(s) | 413 |
| BsmFI | GGGAC | 1 cut(s) | 270 |
| Bso31I | GGTCTC | 2 cut(s) | 338, 358 |
| BsoBI | CYCGRG | 1 cut(s) | 469 |
| Bsp119I | TTCGAA | 1 cut(s) | 504 |
| Bsp143I | GATC | 2 cut(s) | 79, 259 |
| BspACI | CCGC | 2 cut(s) | 84, 103 |
| BspLI | GGNNCC | 1 cut(s) | 81 |
| BspPI | GGATC | 2 cut(s) | 74, 87 |
| BspT104I | TTCGAA | 1 cut(s) | 504 |
| BspTNI | GGTCTC | 2 cut(s) | 338, 358 |
| BsrI | ACTGG | 1 cut(s) | 63 |
| BssECI | CCNNGG | 3 cut(s) | 287, 469, 470 |
| BssMI | GATC | 2 cut(s) | 79, 259 |
| Bst2UI | CCWGG | 1 cut(s) | 289 |
| Bst4CI | ACNGT | 2 cut(s) | 73, 142 |
| BstBI | TTCGAA | 1 cut(s) | 504 |
| BstF5I | GGATG | 1 cut(s) | 39 |
| BstH2I | RGCGCY | 1 cut(s) | 92 |
| BstHHI | GCGC | 1 cut(s) | 91 |
| BstKTI | GATC | 2 cut(s) | 82, 262 |
| BstMAI | GTCTC | 3 cut(s) | 338, 358, 413 |
| BstMBI | GATC | 2 cut(s) | 79, 259 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 95, 109, 311, 364 |
| BstNI | CCWGG | 1 cut(s) | 289 |
| BstSCI | CCNGG | 4 cut(s) | 287, 343, 468, 469 |
| BstV1I | GCAGC | 2 cut(s) | 98, 345 |
| BstX2I | RGATCY | 1 cut(s) | 79 |
| BstYI | RGATCY | 1 cut(s) | 79 |
| BtsCI | GGATG | 1 cut(s) | 39 |
| CfoI | GCGC | 1 cut(s) | 91 |
| Cfr13I | GGNCC | 1 cut(s) | 124 |
| Cfr9I | CCCGGG | 1 cut(s) | 469 |
| CviAII | CATG | 2 cut(s) | 121, 390 |
| CviJI | RGCY | 4 cut(s) | 112, 197, 314, 386 |
| CviKI_1 | RGCY | 4 cut(s) | 112, 197, 314, 386 |
| DpnI | GATC | 2 cut(s) | 81, 261 |
| DpnII | GATC | 2 cut(s) | 79, 259 |
| DraI | TTTAAA | 1 cut(s) | 276 |
| Eco31I | GGTCTC | 2 cut(s) | 338, 358 |
| Eco47I | GGWCC | 1 cut(s) | 124 |
| Eco47III | AGCGCT | 1 cut(s) | 90 |
| Eco57I | CTGAAG | 1 cut(s) | 191 |
| Eco88I | CYCGRG | 1 cut(s) | 469 |
| EcoRII | CCWGG | 1 cut(s) | 287 |
| EcoT22I | ATGCAT | 1 cut(s) | 307 |
| Esp3I | CGTCTC | 1 cut(s) | 413 |
| FaeI | CATG | 2 cut(s) | 124, 393 |
| FaiI | YATR | 6 cut(s) | 95, 122, 181, 391, 456, 462 |
| FaqI | GGGAC | 1 cut(s) | 270 |
| FatI | CATG | 2 cut(s) | 120, 389 |
| FauI | CCCGC | 1 cut(s) | 91 |
| Fnu4HI | GCNGC | 2 cut(s) | 87, 359 |
| FokI | GGATG | 1 cut(s) | 26 |
| Fsp4HI | GCNGC | 2 cut(s) | 87, 359 |
| FspBI | CTAG | 1 cut(s) | 362 |
| GlaI | GCGC | 1 cut(s) | 90 |
| GluI | GCNGC | 2 cut(s) | 87, 359 |
| HaeII | RGCGCY | 1 cut(s) | 92 |
| HapII | CCGG | 2 cut(s) | 345, 470 |
| HhaI | GCGC | 1 cut(s) | 91 |
| Hin1II | CATG | 2 cut(s) | 124, 393 |
| Hin6I | GCGC | 1 cut(s) | 89 |
| HinP1I | GCGC | 1 cut(s) | 89 |
| HinfI | GANTC | 2 cut(s) | 152, 221 |
| HpaII | CCGG | 2 cut(s) | 345, 470 |
| HphI | GGTGA | 1 cut(s) | 269 |
| Hpy188I | TCNGA | 3 cut(s) | 253, 328, 429 |
| Hpy188III | TCNNGA | 2 cut(s) | 209, 376 |
| HpyAV | CCTTC | 1 cut(s) | 184 |
| HpyCH4III | ACNGT | 2 cut(s) | 73, 142 |
| HpyCH4V | TGCA | 3 cut(s) | 26, 305, 367 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 95, 109, 311, 364 |
| Hsp92II | CATG | 2 cut(s) | 124, 393 |
| HspAI | GCGC | 1 cut(s) | 89 |
| Kzo9I | GATC | 2 cut(s) | 79, 259 |
| Lsp1109I | GCAGC | 2 cut(s) | 98, 345 |
| MaeI | CTAG | 1 cut(s) | 362 |
| MalI | GATC | 2 cut(s) | 81, 261 |
| MboI | GATC | 2 cut(s) | 79, 259 |
| MboII | GAAGA | 5 cut(s) | 184, 187, 230, 442, 450 |
| MflI | RGATCY | 1 cut(s) | 79 |
| MluCI | AATT | 1 cut(s) | 247 |
| MlyI | GAGTC | 1 cut(s) | 161 |
| MnlI | CCTC | 8 cut(s) | 43, 46, 70, 137, 177, 187, 343, 409 |
| Mph1103I | ATGCAT | 1 cut(s) | 307 |
| MseI | TTAA | 1 cut(s) | 275 |
| MspI | CCGG | 2 cut(s) | 345, 470 |
| MspR9I | CCNGG | 4 cut(s) | 289, 345, 470, 471 |
| MvaI | CCWGG | 1 cut(s) | 289 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 95, 109, 311, 364 |
| NciI | CCSGG | 3 cut(s) | 345, 470, 471 |
| NdeII | GATC | 2 cut(s) | 79, 259 |
| NlaIII | CATG | 2 cut(s) | 124, 393 |
| NlaIV | GGNNCC | 1 cut(s) | 81 |
| NsiI | ATGCAT | 1 cut(s) | 307 |
| NspV | TTCGAA | 1 cut(s) | 504 |
| PfeI | GAWTC | 1 cut(s) | 221 |
| PkrI | GCNGC | 2 cut(s) | 88, 360 |
| PleI | GAGTC | 1 cut(s) | 160 |
| PpsI | GAGTC | 1 cut(s) | 160 |
| Psp6I | CCWGG | 1 cut(s) | 287 |
| PspGI | CCWGG | 1 cut(s) | 287 |
| PspN4I | GGNNCC | 1 cut(s) | 81 |
| PspPI | GGNCC | 1 cut(s) | 124 |
| PsuI | RGATCY | 1 cut(s) | 79 |
| SaqAI | TTAA | 1 cut(s) | 275 |
| SatI | GCNGC | 2 cut(s) | 87, 359 |
| Sau3AI | GATC | 2 cut(s) | 79, 259 |
| Sau96I | GGNCC | 1 cut(s) | 124 |
| SchI | GAGTC | 1 cut(s) | 161 |
| ScrFI | CCNGG | 4 cut(s) | 289, 345, 470, 471 |
| SetI | ASST | 2 cut(s) | 12, 354 |
| SfuI | TTCGAA | 1 cut(s) | 504 |
| SinI | GGWCC | 1 cut(s) | 124 |
| SmaI | CCCGGG | 1 cut(s) | 471 |
| Sse9I | AATT | 1 cut(s) | 247 |
| SsiI | CCGC | 2 cut(s) | 84, 103 |
| SspI | AATATT | 1 cut(s) | 371 |
| SspMI | CTAG | 1 cut(s) | 362 |
| StyD4I | CCNGG | 4 cut(s) | 287, 343, 468, 469 |
| TaaI | ACNGT | 2 cut(s) | 73, 142 |
| TaqI | TCGA | 1 cut(s) | 504 |
| TasI | AATT | 1 cut(s) | 247 |
| TfiI | GAWTC | 1 cut(s) | 221 |
| Tru1I | TTAA | 1 cut(s) | 275 |
| Tru9I | TTAA | 1 cut(s) | 275 |
| TseI | GCWGC | 2 cut(s) | 86, 358 |
| TspMI | CCCGGG | 1 cut(s) | 469 |
| VpaK11BI | GGWCC | 1 cut(s) | 124 |
| XmaI | CCCGGG | 1 cut(s) | 469 |
| XspI | CTAG | 1 cut(s) | 362 |
| Zsp2I | ATGCAT | 1 cut(s) | 307 |