Rmu_sc0003102.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003102.1
OG0000022
Physical Location & Seq
Reverse (-)
1 .. 3343
3343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003102.1_g000001.1.cds

Sequence Viewer

Length: 1646 bp
atgtgtggcctgtgcaagggacttccaggggcagcgcttagcgaggggcgaggatggcatgctgataagcaagcaagcaagctgcaagtgcgtgacgcaagcttatgcaagggcgatgcaagcggcgagtggttgtgtgatctgacgaactgggtgtgtcaaatggaggaggagttgggaaatctggttaggcgattggcgctcacagaggaggaggcccaagagatcatcctgccggagacgtctacagattggaaacctaaaaaattcctacttgtgggcagattgatgacgagcaagccctacaggaaggagaccttgatgggaactatgaagactctctggtgtccgaagaaaagtagtagagagaggcccagagttacagccgtggctttggaagggagtgacaggattgttttttccttttcccatgaatatgatcggaatcgagtcttgtttggaagtccgtggcattttgataaggctctttttgcgatctcagcgacggatggtagggaagacttgttgaaggtttctcttaattggcaacttttctggatcctggcatggggggtccctcctctgtacatggagaaagaaacaggagtccgtattagggatacggtggggagatatgtccggatggaagaggatgtgcatgggatttatctgggtacttctctcaaggtgagagtgatgatagatgttagcaaacccctcaggagagttgcttctgttcgactccctcggaatgataaggtttcgtgttttgagcttgattaccacaagcttccgacgttctgcttttattgtggattgttgtctcatgactctaaccggtgtgaactgcacaccaatggaacgatccaggagatgcagttcgatgcgcttatgtgtgctgaaagaagagaccagtggttggcagagaaattgaaaacggaaaagcgtgggtcggcgtcggaaccggaagcttgctggacaggatgctggtttggattgattgagaagaaaagaagtggttggaccattcaggcacctgactttccgatgtccgggatggtccgaactaggtcagaatgggaggatgagcacctagtctgcgaagagggtgatgtaatggaggaggattcagctcaggaaccagagttgggagggggtgggggagcggtgaagcggcggcgtacccgtgattttctgccggaagcggcgatgggctcaatcaatgggagtggattacgggacgtccccattaatgccagcccagacttatcccaggcattaatggtgatgaattccggattcgggttaaatgagggaatggcggatagggtggagggatctcaggagaggagtgcggattgggcgggacaattttcaaatacagctattctcacgggacaaaaggcgaagaagctggttttgcgtttggacaaggaaagcccaattgggccgactggtgggggatgtgcctccggggcttctagtgagaataatgggctgctgattgaagtggcatcttgtggtactacgggtggacaggataaacacaagaagagagtttcacggggtcaatcgcaggccatattggccccgtcttctcctaggcctattgggacctcagaggtggacaacgtaaggagagggaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

548

Amino Acids

60.93

Weight (kDa)

6.78

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 245, 1245
AccB1I GGYRCC 1 cut(s) 1033
AccB7I CCANNNNNTGG 1 cut(s) 919
AccBSI CCGCTC 1 cut(s) 1166
AccI GTMKAC 1 cut(s) 245
AccIII TCCGGA 2 cut(s) 639, 1295
AciI CCGC 8 cut(s) 123, 1166, 1174, 1177, 1205, 1322, 1355, 1364
AclWI GGATC 4 cut(s) 553, 566, 859, 1345
AcsI RAATTY 2 cut(s) 266, 1291
AcyI GRCGYC 3 cut(s) 242, 956, 1242
AfaI GTAC 4 cut(s) 587, 676, 1183, 1525
AfeI AGCGCT 1 cut(s) 36
AfiI CCNNNNNNNGG 9 cut(s) 16, 277, 568, 616, 919, 1052, 1148, 1302, 1457
AgeI ACCGGT 1 cut(s) 837
AgsI TTSAA 4 cut(s) 529, 934, 1377, 1508
AjnI CCWGG 4 cut(s) 25, 561, 867, 1272
AjuI GAANNNNNNNTTGG 2 cut(s) 1428, 1460
AloI GAACNNNNNNTCC 2 cut(s) 863, 895
AluBI AGCT 8 cut(s) 82, 102, 775, 790, 971, 1133, 1385, 1414
AluI AGCT 8 cut(s) 82, 102, 775, 790, 971, 1133, 1385, 1414
Alw21I GWGCWC 1 cut(s) 1092
Alw26I GTCTC 4 cut(s) 233, 308, 828, 903
AlwI GGATC 4 cut(s) 553, 566, 859, 1345
Aor13HI TCCGGA 2 cut(s) 639, 1295
Aor51HI AGCGCT 1 cut(s) 36
AoxI GGCC 7 cut(s) 7, 216, 371, 1448, 1578, 1587, 1604
ApeKI GCWGC 3 cut(s) 32, 82, 1498
ApoI RAATTY 2 cut(s) 266, 1291
AseI ATTAAT 2 cut(s) 1251, 1280
AsiGI ACCGGT 1 cut(s) 837
AspA2I CCTAGG 1 cut(s) 1601
AspLEI GCGC 3 cut(s) 37, 202, 889
AspS9I GGNCC 8 cut(s) 217, 372, 574, 1023, 1060, 1448, 1588, 1614
AsuC2I CCSGG 2 cut(s) 1054, 1474
AsuHPI GGTGA 4 cut(s) 700, 1121, 1180, 1297
AvaII GGWCC 4 cut(s) 574, 1023, 1060, 1614
AvrII CCTAGG 1 cut(s) 1601
AxyI CCTNAGG 1 cut(s) 719
BamHI GGATCC 1 cut(s) 558
BanI GGYRCC 1 cut(s) 1033
BanII GRGCYC 1 cut(s) 1217
BbsI GAAGAC 3 cut(s) 341, 525, 1587
Bbv12I GWGCWC 1 cut(s) 1092
BbvI GCAGC 3 cut(s) 44, 69, 1485
BccI CCATC 6 cut(s) 48, 316, 503, 637, 1051, 1204
BceAI ACGGC 1 cut(s) 371
BciT130I CCWGG 4 cut(s) 27, 563, 869, 1274
BciVI GTATCC 1 cut(s) 613
BcnI CCSGG 2 cut(s) 1054, 1474
BcoDI GTCTC 4 cut(s) 233, 308, 828, 903
BfaI CTAG 4 cut(s) 1068, 1094, 1482, 1602
BfmI CTRYAG 2 cut(s) 246, 304
BfoI RGCGCY 2 cut(s) 38, 203
BfuI GTATCC 1 cut(s) 613
BglI GCCNNNNNGGC 2 cut(s) 1475, 1586
BisI GCNGC 7 cut(s) 33, 83, 124, 1175, 1178, 1206, 1499
BlnI CCTAGG 1 cut(s) 1601
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 7 cut(s) 34, 84, 125, 1176, 1179, 1207, 1500
Bme1390I CCNGG 6 cut(s) 27, 563, 869, 1054, 1274, 1474
Bme18I GGWCC 4 cut(s) 574, 1023, 1060, 1614
BmgT120I GGNCC 8 cut(s) 217, 372, 574, 1023, 1060, 1448, 1588, 1614
BmiI GGNNCC 8 cut(s) 560, 575, 576, 963, 1035, 1140, 1590, 1615
BmrFI CCNGG 6 cut(s) 27, 563, 869, 1054, 1274, 1474
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 5 cut(s) 106, 864, 874, 974, 1523
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 3 cut(s) 341, 525, 1587
Bpu10I CCTNAGC 1 cut(s) 1134
Bpu1102I GCTNAGC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 2 cut(s) 1054, 1474
BsaBI GATNNNNATC 1 cut(s) 444
BsaHI GRCGYC 3 cut(s) 242, 956, 1242
BsaI GGTCTC 2 cut(s) 308, 903
BsaJI CCNNGG 7 cut(s) 26, 387, 467, 746, 1272, 1473, 1601
BsaWI WCCGGW 4 cut(s) 639, 837, 964, 1295
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 863, 893
Bsc4I CCNNNNNNNGG 9 cut(s) 16, 277, 568, 616, 919, 1052, 1148, 1302, 1457
Bse118I RCCGGY 1 cut(s) 837
Bse1I ACTGG 3 cut(s) 155, 913, 1459
Bse21I CCTNAGG 1 cut(s) 719
Bse8I GATNNNNATC 1 cut(s) 444
BseAI TCCGGA 2 cut(s) 639, 1295
BseBI CCWGG 4 cut(s) 27, 563, 869, 1274
BseDI CCNNGG 7 cut(s) 26, 387, 467, 746, 1272, 1473, 1601
BseGI GGATG 9 cut(s) 59, 228, 514, 648, 658, 989, 1062, 1090, 1469
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 9 cut(s) 16, 277, 568, 616, 919, 1052, 1148, 1302, 1457
BseMII CTCAG 5 cut(s) 513, 733, 1148, 1355, 1632
BseNI ACTGG 3 cut(s) 155, 913, 1459
BseRI GAGGAG 7 cut(s) 182, 185, 224, 227, 570, 1136, 1363
BseXI GCAGC 3 cut(s) 44, 69, 1485
BsgI GTGCAG 1 cut(s) 833
BshFI GGCC 7 cut(s) 9, 218, 373, 1450, 1580, 1589, 1606
BshNI GGYRCC 1 cut(s) 1033
BshTI ACCGGT 1 cut(s) 837
BsiHKAI GWGCWC 1 cut(s) 1092
BsiSI CCGG 8 cut(s) 236, 640, 838, 965, 1053, 1199, 1296, 1473
BslFI GGGAC 7 cut(s) 33, 560, 1229, 1253, 1380, 1410, 1627
BslI CCNNNNNNNGG 9 cut(s) 16, 277, 568, 616, 919, 1052, 1148, 1302, 1457
BsmAI GTCTC 4 cut(s) 233, 308, 828, 903
BsmBI CGTCTC 1 cut(s) 233
BsmFI GGGAC 7 cut(s) 33, 560, 1229, 1253, 1380, 1410, 1627
BsnI GGCC 7 cut(s) 9, 218, 373, 1450, 1580, 1589, 1606
Bso31I GGTCTC 2 cut(s) 308, 903
Bsp1286I GDGCHC 2 cut(s) 1092, 1217
Bsp13I TCCGGA 2 cut(s) 639, 1295
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 7 cut(s) 139, 225, 439, 495, 558, 864, 1337
Bsp1720I GCTNAGC 1 cut(s) 38
BspACI CCGC 8 cut(s) 123, 1166, 1174, 1177, 1205, 1322, 1355, 1364
BspANI GGCC 7 cut(s) 9, 218, 373, 1450, 1580, 1589, 1606
BspCNI CTCAG 5 cut(s) 512, 732, 1147, 1354, 1631
BspEI TCCGGA 2 cut(s) 639, 1295
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 8 cut(s) 560, 575, 576, 963, 1035, 1140, 1590, 1615
BspPI GGATC 4 cut(s) 553, 566, 859, 1345
BspT107I GGYRCC 1 cut(s) 1033
BspTNI GGTCTC 2 cut(s) 308, 903
BsrBI CCGCTC 1 cut(s) 1166
BsrFI RCCGGY 1 cut(s) 837
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 3 cut(s) 155, 913, 1459
BssAI RCCGGY 1 cut(s) 837
BssECI CCNNGG 7 cut(s) 26, 387, 467, 746, 1272, 1473, 1601
BssMI GATC 7 cut(s) 139, 225, 439, 495, 558, 864, 1337
BssNI GRCGYC 3 cut(s) 242, 956, 1242
BssT1I CCWWGG 1 cut(s) 1601
Bst2UI CCWGG 4 cut(s) 27, 563, 869, 1274
Bst4CI ACNGT 1 cut(s) 625
Bst6I CTCTTC 4 cut(s) 642, 901, 1098, 1547
BstACI GRCGYC 3 cut(s) 242, 956, 1242
BstAUI TGTACA 1 cut(s) 585
BstDEI CTNAG 6 cut(s) 38, 499, 719, 1134, 1341, 1618
BstDSI CCRYGG 2 cut(s) 387, 467
BstENI CCTNNNNNAGG 1 cut(s) 14
BstF5I GGATG 9 cut(s) 59, 228, 514, 648, 658, 989, 1062, 1090, 1469
BstH2I RGCGCY 2 cut(s) 38, 203
BstHHI GCGC 3 cut(s) 37, 202, 889
BstKTI GATC 7 cut(s) 142, 228, 442, 498, 561, 867, 1340
BstMAI GTCTC 4 cut(s) 233, 308, 828, 903
BstMBI GATC 7 cut(s) 139, 225, 439, 495, 558, 864, 1337
BstNI CCWGG 4 cut(s) 27, 563, 869, 1274
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 6 cut(s) 25, 561, 867, 1052, 1272, 1472
BstSFI CTRYAG 2 cut(s) 246, 304
BstV1I GCAGC 3 cut(s) 44, 69, 1485
BstV2I GAAGAC 3 cut(s) 341, 525, 1587
BstX2I RGATCY 2 cut(s) 558, 1337
BstYI RGATCY 2 cut(s) 558, 1337
Bsu36I CCTNAGG 1 cut(s) 719
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 7 cut(s) 9, 218, 373, 1450, 1580, 1589, 1606
BtgI CCRYGG 2 cut(s) 387, 467
BtgZI GCGATG 2 cut(s) 129, 1223
BtsCI GGATG 9 cut(s) 59, 228, 514, 648, 658, 989, 1062, 1090, 1469
BtsIMutI CAGTG 1 cut(s) 920
CciI TCATGA 1 cut(s) 826
CfoI GCGC 3 cut(s) 37, 202, 889
Cfr10I RCCGGY 1 cut(s) 837
Cfr13I GGNCC 8 cut(s) 217, 372, 574, 1023, 1060, 1448, 1588, 1614
CseI GACGC 2 cut(s) 104, 945
Csp6I GTAC 4 cut(s) 586, 675, 1182, 1524
CspAI ACCGGT 1 cut(s) 837
CspCI CAANNNNNGTGG 2 cut(s) 1210, 1245
CviAII CATG 6 cut(s) 59, 431, 567, 589, 659, 827
CviQI GTAC 4 cut(s) 586, 675, 1182, 1524
DdeI CTNAG 6 cut(s) 38, 499, 719, 1134, 1341, 1618
DpnI GATC 7 cut(s) 141, 227, 441, 497, 560, 866, 1339
DpnII GATC 7 cut(s) 139, 225, 439, 495, 558, 864, 1337
Eam1104I CTCTTC 4 cut(s) 642, 901, 1098, 1547
EarI CTCTTC 4 cut(s) 642, 901, 1098, 1547
EciI GGCGGA 1 cut(s) 1337
Eco130I CCWWGG 1 cut(s) 1601
Eco147I AGGCCT 1 cut(s) 1606
Eco24I GRGCYC 1 cut(s) 1217
Eco31I GGTCTC 2 cut(s) 308, 903
Eco47I GGWCC 4 cut(s) 574, 1023, 1060, 1614
Eco47III AGCGCT 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 719
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoO109I RGGNCCY 2 cut(s) 574, 1614
EcoRI GAATTC 1 cut(s) 1291
EcoRII CCWGG 4 cut(s) 25, 561, 867, 1272
EcoT14I CCWWGG 1 cut(s) 1601
EcoT38I GRGCYC 1 cut(s) 1217
ErhI CCWWGG 1 cut(s) 1601
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 6 cut(s) 62, 434, 570, 592, 662, 830
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FaqI GGGAC 7 cut(s) 33, 560, 1229, 1253, 1380, 1410, 1627
FatI CATG 6 cut(s) 58, 430, 566, 588, 658, 826
FauI CCCGC 1 cut(s) 1357
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 7 cut(s) 33, 83, 124, 1175, 1178, 1206, 1499
FokI GGATG 9 cut(s) 66, 215, 521, 655, 665, 996, 1069, 1097, 1476
FriOI GRGCYC 1 cut(s) 1217
Fsp4HI GCNGC 7 cut(s) 33, 83, 124, 1175, 1178, 1206, 1499
FspBI CTAG 4 cut(s) 1068, 1094, 1482, 1602
GlaI GCGC 3 cut(s) 36, 201, 888
GluI GCNGC 7 cut(s) 33, 83, 124, 1175, 1178, 1206, 1499
HaeII RGCGCY 2 cut(s) 38, 203
HaeIII GGCC 7 cut(s) 9, 218, 373, 1450, 1580, 1589, 1606
HapII CCGG 8 cut(s) 236, 640, 838, 965, 1053, 1199, 1296, 1473
HgaI GACGC 2 cut(s) 104, 945
HhaI GCGC 3 cut(s) 37, 202, 889
Hin1I GRCGYC 3 cut(s) 242, 956, 1242
Hin1II CATG 6 cut(s) 62, 434, 570, 592, 662, 830
Hin6I GCGC 3 cut(s) 35, 200, 887
HinP1I GCGC 3 cut(s) 35, 200, 887
HindIII AAGCTT 3 cut(s) 100, 788, 969
HinfI GANTC 8 cut(s) 337, 445, 450, 606, 741, 830, 1127, 1299
HpaII CCGG 8 cut(s) 236, 640, 838, 965, 1053, 1199, 1296, 1473
HphI GGTGA 4 cut(s) 700, 1121, 1180, 1297
Hpy166II GTNNAC 4 cut(s) 246, 845, 1535, 1627
Hpy188III TCNNGA 7 cut(s) 556, 640, 721, 827, 1136, 1296, 1343
Hpy8I GTNNAC 4 cut(s) 246, 845, 1535, 1627
Hpy99I CGWCG 3 cut(s) 508, 799, 961
HpyAV CCTTC 3 cut(s) 304, 392, 523
HpyCH4III ACNGT 1 cut(s) 625
HpyCH4IV ACGT 4 cut(s) 242, 797, 1242, 1632
HpyCH4V TGCA 7 cut(s) 15, 85, 108, 119, 658, 850, 877
HpyF3I CTNAG 6 cut(s) 38, 499, 719, 1134, 1341, 1618
HpySE526I ACGT 4 cut(s) 242, 797, 1242, 1632
Hsp92I GRCGYC 3 cut(s) 242, 956, 1242
Hsp92II CATG 6 cut(s) 62, 434, 570, 592, 662, 830
HspAI GCGC 3 cut(s) 35, 200, 887
KflI GGGWCCC 1 cut(s) 574
Kpn2I TCCGGA 2 cut(s) 639, 1295
Kzo9I GATC 7 cut(s) 139, 225, 439, 495, 558, 864, 1337
LmnI GCTCC 1 cut(s) 1163
Lsp1109I GCAGC 3 cut(s) 44, 69, 1485
LweI GCATC 5 cut(s) 106, 864, 874, 974, 1523
MaeI CTAG 4 cut(s) 1068, 1094, 1482, 1602
MaeII ACGT 4 cut(s) 242, 797, 1242, 1632
MaeIII GTNAC 3 cut(s) 92, 379, 404
MalI GATC 7 cut(s) 141, 227, 441, 497, 560, 866, 1339
MbiI CCGCTC 1 cut(s) 1166
MboI GATC 7 cut(s) 139, 225, 439, 495, 558, 864, 1337
MfeI CAATTG 1 cut(s) 1443
MflI RGATCY 2 cut(s) 558, 1337
MhlI GDGCHC 2 cut(s) 1092, 1217
MluCI AATT 6 cut(s) 266, 541, 929, 1291, 1370, 1443
MlyI GAGTC 5 cut(s) 331, 459, 615, 735, 824
MmeI TCCRAC 3 cut(s) 818, 939, 1001
MroI TCCGGA 2 cut(s) 639, 1295
MseI TTAA 4 cut(s) 540, 1251, 1280, 1307
MslI CAYNNNNRTG 2 cut(s) 435, 855
MspI CCGG 8 cut(s) 236, 640, 838, 965, 1053, 1199, 1296, 1473
MspR9I CCNGG 6 cut(s) 27, 563, 869, 1054, 1274, 1474
MunI CAATTG 1 cut(s) 1443
MvaI CCWGG 4 cut(s) 27, 563, 869, 1274
NciI CCSGG 2 cut(s) 1054, 1474
NdeII GATC 7 cut(s) 139, 225, 439, 495, 558, 864, 1337
NlaIII CATG 6 cut(s) 62, 434, 570, 592, 662, 830
NlaIV GGNNCC 8 cut(s) 560, 575, 576, 963, 1035, 1140, 1590, 1615
NmuCI GTSAC 2 cut(s) 92, 404
NspI RCATGY 1 cut(s) 62
PaeI GCATGC 1 cut(s) 62
PagI TCATGA 1 cut(s) 826
PceI AGGCCT 1 cut(s) 1606
PfeI GAWTC 3 cut(s) 445, 1127, 1299
PflMI CCANNNNNTGG 1 cut(s) 919
PfoI TCCNGGA 2 cut(s) 867, 1052
PinAI ACCGGT 1 cut(s) 837
PkrI GCNGC 7 cut(s) 34, 84, 125, 1176, 1179, 1207, 1500
PleI GAGTC 5 cut(s) 331, 458, 614, 735, 824
PpsI GAGTC 5 cut(s) 331, 458, 614, 735, 824
PpuMI RGGWCCY 2 cut(s) 574, 1614
PshBI ATTAAT 2 cut(s) 1251, 1280
Psp5II RGGWCCY 2 cut(s) 574, 1614
Psp6I CCWGG 4 cut(s) 25, 561, 867, 1272
PspGI CCWGG 4 cut(s) 25, 561, 867, 1272
PspN4I GGNNCC 8 cut(s) 560, 575, 576, 963, 1035, 1140, 1590, 1615
PspPI GGNCC 8 cut(s) 217, 372, 574, 1023, 1060, 1448, 1588, 1614
PspPPI RGGWCCY 2 cut(s) 574, 1614
PsuI RGATCY 2 cut(s) 558, 1337
RsaI GTAC 4 cut(s) 587, 676, 1183, 1525
RsaNI GTAC 4 cut(s) 586, 675, 1182, 1524
RseI CAYNNNNRTG 2 cut(s) 435, 855
SaqAI TTAA 4 cut(s) 540, 1251, 1280, 1307
SatI GCNGC 7 cut(s) 33, 83, 124, 1175, 1178, 1206, 1499
Sau3AI GATC 7 cut(s) 139, 225, 439, 495, 558, 864, 1337
Sau96I GGNCC 8 cut(s) 217, 372, 574, 1023, 1060, 1448, 1588, 1614
SchI GAGTC 5 cut(s) 331, 459, 615, 735, 824
ScrFI CCNGG 6 cut(s) 27, 563, 869, 1054, 1274, 1474
SduI GDGCHC 2 cut(s) 1092, 1217
SfaNI GCATC 5 cut(s) 106, 864, 874, 974, 1523
SfcI CTRYAG 2 cut(s) 246, 304
SfiI GGCCNNNNNGGCC 1 cut(s) 1586
SinI GGWCC 4 cut(s) 574, 1023, 1060, 1614
SmiMI CAYNNNNRTG 2 cut(s) 435, 855
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
SphI GCATGC 1 cut(s) 62
Sse9I AATT 6 cut(s) 266, 541, 929, 1291, 1370, 1443
SseBI AGGCCT 1 cut(s) 1606
SsiI CCGC 8 cut(s) 123, 1166, 1174, 1177, 1205, 1322, 1355, 1364
SspMI CTAG 4 cut(s) 1068, 1094, 1482, 1602
StuI AGGCCT 1 cut(s) 1606
StyD4I CCNGG 6 cut(s) 25, 561, 867, 1052, 1272, 1472
StyI CCWWGG 1 cut(s) 1601
TaaI ACNGT 1 cut(s) 625
TaiI ACGT 4 cut(s) 245, 800, 1245, 1635
TaqI TCGA 3 cut(s) 448, 739, 882
TasI AATT 6 cut(s) 266, 541, 929, 1291, 1370, 1443
TatI WGTACW 1 cut(s) 585
TauI GCSGC 4 cut(s) 126, 1177, 1180, 1208
TfiI GAWTC 3 cut(s) 445, 1127, 1299
Tru1I TTAA 4 cut(s) 540, 1251, 1280, 1307
Tru9I TTAA 4 cut(s) 540, 1251, 1280, 1307
TscAI CASTG 1 cut(s) 920
TseFI GTSAC 2 cut(s) 92, 404
TseI GCWGC 3 cut(s) 32, 82, 1498
Tsp45I GTSAC 2 cut(s) 92, 404
TspDTI ATGAA 3 cut(s) 347, 447, 1304
TspGWI ACGGA 4 cut(s) 456, 521, 599, 953
TspRI CASTG 1 cut(s) 920
Van91I CCANNNNNTGG 1 cut(s) 919
VpaK11BI GGWCC 4 cut(s) 574, 1023, 1060, 1614
VspI ATTAAT 2 cut(s) 1251, 1280
XagI CCTNNNNNAGG 1 cut(s) 14
XapI RAATTY 2 cut(s) 266, 1291
XceI RCATGY 1 cut(s) 62
XmaJI CCTAGG 1 cut(s) 1601
XmiI GTMKAC 1 cut(s) 245
XspI CTAG 4 cut(s) 1068, 1094, 1482, 1602
ZraI GACGTC 2 cut(s) 243, 1243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.