Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 569 |
| Acc36I | ACCTGC | 1 cut(s) | 569 |
| AccII | CGCG | 1 cut(s) | 767 |
| AccIII | TCCGGA | 2 cut(s) | 598, 655 |
| AciI | CCGC | 5 cut(s) | 56, 248, 525, 551, 621 |
| AclWI | GGATC | 1 cut(s) | 98 |
| AcoI | YGGCCR | 2 cut(s) | 143, 583 |
| AcsI | RAATTY | 1 cut(s) | 736 |
| AcuI | CTGAAG | 1 cut(s) | 510 |
| AfaI | GTAC | 3 cut(s) | 112, 173, 639 |
| AfeI | AGCGCT | 1 cut(s) | 15 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 90, 241, 431, 524, 592, 611 |
| AgsI | TTSAA | 1 cut(s) | 736 |
| AluBI | AGCT | 1 cut(s) | 488 |
| AluI | AGCT | 1 cut(s) | 488 |
| Alw26I | GTCTC | 1 cut(s) | 627 |
| AlwI | GGATC | 1 cut(s) | 98 |
| Aor13HI | TCCGGA | 2 cut(s) | 598, 655 |
| Aor51HI | AGCGCT | 1 cut(s) | 15 |
| AoxI | GGCC | 3 cut(s) | 131, 143, 583 |
| ApeKI | GCWGC | 7 cut(s) | 8, 11, 16, 49, 181, 334, 569 |
| ApoI | RAATTY | 1 cut(s) | 736 |
| AseI | ATTAAT | 1 cut(s) | 674 |
| AspLEI | GCGC | 2 cut(s) | 8, 16 |
| AspS9I | GGNCC | 2 cut(s) | 33, 131 |
| AsuHPI | GGTGA | 4 cut(s) | 58, 368, 565, 619 |
| AsuII | TTCGAA | 1 cut(s) | 717 |
| AvaII | GGWCC | 1 cut(s) | 33 |
| BalI | TGGCCA | 1 cut(s) | 145 |
| BanII | GRGCYC | 1 cut(s) | 598 |
| BbvI | GCAGC | 6 cut(s) | 3, 23, 36, 168, 321, 556 |
| BccI | CCATC | 4 cut(s) | 337, 496, 502, 515 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 142, 176 |
| BcoDI | GTCTC | 1 cut(s) | 627 |
| BfaI | CTAG | 5 cut(s) | 117, 167, 237, 366, 396 |
| BfmI | CTRYAG | 3 cut(s) | 9, 17, 570 |
| BfoI | RGCGCY | 2 cut(s) | 9, 17 |
| BfuAI | ACCTGC | 1 cut(s) | 569 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 522 |
| BisI | GCNGC | 7 cut(s) | 9, 12, 17, 50, 182, 335, 570 |
| BlsI | GCNGC | 7 cut(s) | 10, 13, 18, 51, 183, 336, 571 |
| BmcAI | AGTACT | 1 cut(s) | 112 |
| Bme18I | GGWCC | 1 cut(s) | 33 |
| BmgT120I | GGNCC | 2 cut(s) | 33, 131 |
| BmiI | GGNNCC | 5 cut(s) | 264, 311, 414, 597, 603 |
| BmrI | ACTGGG | 1 cut(s) | 102 |
| BmsI | GCATC | 2 cut(s) | 265, 411 |
| BmuI | ACTGGG | 1 cut(s) | 102 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 580, 612 |
| Bpu14I | TTCGAA | 1 cut(s) | 717 |
| BsaJI | CCNNGG | 1 cut(s) | 29 |
| BsaWI | WCCGGW | 2 cut(s) | 598, 655 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 650, 680 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 90, 241, 431, 524, 592, 611 |
| Bse118I | RCCGGY | 2 cut(s) | 424, 604 |
| Bse1I | ACTGG | 1 cut(s) | 108 |
| BseAI | TCCGGA | 2 cut(s) | 598, 655 |
| BseDI | CCNNGG | 1 cut(s) | 29 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 90, 241, 431, 524, 592, 611 |
| BseMII | CTCAG | 2 cut(s) | 374, 408 |
| BseNI | ACTGG | 1 cut(s) | 108 |
| BseRI | GAGGAG | 2 cut(s) | 317, 467 |
| BseXI | GCAGC | 6 cut(s) | 3, 23, 36, 168, 321, 556 |
| Bsh1236I | CGCG | 1 cut(s) | 767 |
| BshFI | GGCC | 3 cut(s) | 133, 145, 585 |
| BsiSI | CCGG | 5 cut(s) | 425, 586, 599, 605, 656 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 90, 241, 431, 524, 592, 611 |
| BsmAI | GTCTC | 1 cut(s) | 627 |
| BsmBI | CGTCTC | 1 cut(s) | 627 |
| BsmI | GAATGC | 1 cut(s) | 682 |
| BsnI | GGCC | 3 cut(s) | 133, 145, 585 |
| Bsp119I | TTCGAA | 1 cut(s) | 717 |
| Bsp1286I | GDGCHC | 1 cut(s) | 598 |
| Bsp13I | TCCGGA | 2 cut(s) | 598, 655 |
| Bsp143I | GATC | 2 cut(s) | 103, 163 |
| Bsp19I | CCATGG | 1 cut(s) | 29 |
| BspACI | CCGC | 5 cut(s) | 56, 248, 525, 551, 621 |
| BspANI | GGCC | 3 cut(s) | 133, 145, 585 |
| BspCNI | CTCAG | 2 cut(s) | 375, 409 |
| BspEI | TCCGGA | 2 cut(s) | 598, 655 |
| BspFNI | CGCG | 1 cut(s) | 767 |
| BspLI | GGNNCC | 5 cut(s) | 264, 311, 414, 597, 603 |
| BspMAI | CTGCAG | 3 cut(s) | 13, 21, 574 |
| BspMI | ACCTGC | 1 cut(s) | 569 |
| BspPI | GGATC | 1 cut(s) | 98 |
| BspT104I | TTCGAA | 1 cut(s) | 717 |
| BsrFI | RCCGGY | 2 cut(s) | 424, 604 |
| BsrI | ACTGG | 1 cut(s) | 108 |
| BssAI | RCCGGY | 2 cut(s) | 424, 604 |
| BssECI | CCNNGG | 1 cut(s) | 29 |
| BssMI | GATC | 2 cut(s) | 103, 163 |
| BssT1I | CCWWGG | 1 cut(s) | 29 |
| Bst6I | CTCTTC | 2 cut(s) | 104, 492 |
| BstBI | TTCGAA | 1 cut(s) | 717 |
| BstC8I | GCNNGC | 3 cut(s) | 54, 155, 267 |
| BstDEI | CTNAG | 3 cut(s) | 383, 417, 447 |
| BstDSI | CCRYGG | 1 cut(s) | 29 |
| BstFNI | CGCG | 1 cut(s) | 767 |
| BstH2I | RGCGCY | 2 cut(s) | 9, 17 |
| BstHHI | GCGC | 2 cut(s) | 8, 16 |
| BstKTI | GATC | 2 cut(s) | 106, 166 |
| BstMAI | GTCTC | 1 cut(s) | 627 |
| BstMBI | GATC | 2 cut(s) | 103, 163 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 275, 522, 575 |
| BstSFI | CTRYAG | 3 cut(s) | 9, 17, 570 |
| BstUI | CGCG | 1 cut(s) | 767 |
| BstV1I | GCAGC | 6 cut(s) | 3, 23, 36, 168, 321, 556 |
| BsuRI | GGCC | 3 cut(s) | 133, 145, 585 |
| BtgI | CCRYGG | 1 cut(s) | 29 |
| BtgZI | GCGATG | 1 cut(s) | 315 |
| BveI | ACCTGC | 1 cut(s) | 569 |
| Cac8I | GCNNGC | 3 cut(s) | 54, 155, 267 |
| CfoI | GCGC | 2 cut(s) | 8, 16 |
| Cfr10I | RCCGGY | 2 cut(s) | 424, 604 |
| Cfr13I | GGNCC | 2 cut(s) | 33, 131 |
| CseI | GACGC | 1 cut(s) | 654 |
| Csp6I | GTAC | 3 cut(s) | 111, 172, 638 |
| CviAII | CATG | 3 cut(s) | 30, 76, 338 |
| CviQI | GTAC | 3 cut(s) | 111, 172, 638 |
| DdeI | CTNAG | 3 cut(s) | 383, 417, 447 |
| DpnI | GATC | 2 cut(s) | 105, 165 |
| DpnII | GATC | 2 cut(s) | 103, 163 |
| EaeI | YGGCCR | 2 cut(s) | 143, 583 |
| Eam1104I | CTCTTC | 2 cut(s) | 104, 492 |
| EarI | CTCTTC | 2 cut(s) | 104, 492 |
| Eco130I | CCWWGG | 1 cut(s) | 29 |
| Eco24I | GRGCYC | 1 cut(s) | 598 |
| Eco47I | GGWCC | 1 cut(s) | 33 |
| Eco47III | AGCGCT | 1 cut(s) | 15 |
| Eco57I | CTGAAG | 1 cut(s) | 510 |
| EcoRI | GAATTC | 1 cut(s) | 736 |
| EcoT14I | CCWWGG | 1 cut(s) | 29 |
| EcoT38I | GRGCYC | 1 cut(s) | 598 |
| ErhI | CCWWGG | 1 cut(s) | 29 |
| Esp3I | CGTCTC | 1 cut(s) | 627 |
| FaeI | CATG | 3 cut(s) | 33, 79, 341 |
| FatI | CATG | 3 cut(s) | 29, 75, 337 |
| FauI | CCCGC | 1 cut(s) | 241 |
| Fnu4HI | GCNGC | 7 cut(s) | 9, 12, 17, 50, 182, 335, 570 |
| FriOI | GRGCYC | 1 cut(s) | 598 |
| Fsp4HI | GCNGC | 7 cut(s) | 9, 12, 17, 50, 182, 335, 570 |
| FspBI | CTAG | 5 cut(s) | 117, 167, 237, 366, 396 |
| GlaI | GCGC | 2 cut(s) | 7, 15 |
| GluI | GCNGC | 7 cut(s) | 9, 12, 17, 50, 182, 335, 570 |
| HaeII | RGCGCY | 2 cut(s) | 9, 17 |
| HaeIII | GGCC | 3 cut(s) | 133, 145, 585 |
| HapII | CCGG | 5 cut(s) | 425, 586, 599, 605, 656 |
| HgaI | GACGC | 1 cut(s) | 654 |
| HhaI | GCGC | 2 cut(s) | 8, 16 |
| Hin1II | CATG | 3 cut(s) | 33, 79, 341 |
| Hin6I | GCGC | 2 cut(s) | 6, 14 |
| HinP1I | GCGC | 2 cut(s) | 6, 14 |
| HincII | GTYRAC | 1 cut(s) | 724 |
| HindII | GTYRAC | 1 cut(s) | 724 |
| HinfI | GANTC | 1 cut(s) | 341 |
| HpaI | GTTAAC | 1 cut(s) | 724 |
| HpaII | CCGG | 5 cut(s) | 425, 586, 599, 605, 656 |
| HphI | GGTGA | 4 cut(s) | 58, 368, 565, 619 |
| Hpy166II | GTNNAC | 1 cut(s) | 724 |
| Hpy188III | TCNNGA | 4 cut(s) | 167, 416, 599, 656 |
| Hpy8I | GTNNAC | 1 cut(s) | 724 |
| HpyAV | CCTTC | 6 cut(s) | 219, 234, 485, 555, 559, 604 |
| HpyCH4IV | ACGT | 1 cut(s) | 636 |
| HpyCH4V | TGCA | 6 cut(s) | 11, 19, 75, 337, 572, 578 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 275, 522, 575 |
| HpyF3I | CTNAG | 3 cut(s) | 383, 417, 447 |
| HpySE526I | ACGT | 1 cut(s) | 636 |
| Hsp92II | CATG | 3 cut(s) | 33, 79, 341 |
| HspAI | GCGC | 2 cut(s) | 6, 14 |
| Kpn2I | TCCGGA | 2 cut(s) | 598, 655 |
| KspAI | GTTAAC | 1 cut(s) | 724 |
| Kzo9I | GATC | 2 cut(s) | 103, 163 |
| LmnI | GCTCC | 6 cut(s) | 262, 315, 418, 485, 601, 601 |
| Lsp1109I | GCAGC | 6 cut(s) | 3, 23, 36, 168, 321, 556 |
| LweI | GCATC | 2 cut(s) | 265, 411 |
| MaeI | CTAG | 5 cut(s) | 117, 167, 237, 366, 396 |
| MaeII | ACGT | 1 cut(s) | 636 |
| MaeIII | GTNAC | 1 cut(s) | 213 |
| MalI | GATC | 2 cut(s) | 105, 165 |
| MboI | GATC | 2 cut(s) | 103, 163 |
| MboII | GAAGA | 2 cut(s) | 91, 509 |
| MhlI | GDGCHC | 1 cut(s) | 598 |
| MlsI | TGGCCA | 1 cut(s) | 145 |
| MluCI | AATT | 4 cut(s) | 125, 254, 675, 736 |
| MluNI | TGGCCA | 1 cut(s) | 145 |
| Mox20I | TGGCCA | 1 cut(s) | 145 |
| MroI | TCCGGA | 2 cut(s) | 598, 655 |
| MscI | TGGCCA | 1 cut(s) | 145 |
| MseI | TTAA | 5 cut(s) | 257, 285, 377, 674, 723 |
| Msp20I | TGGCCA | 1 cut(s) | 145 |
| MspI | CCGG | 5 cut(s) | 425, 586, 599, 605, 656 |
| Mva1269I | GAATGC | 1 cut(s) | 682 |
| MvnI | CGCG | 1 cut(s) | 767 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 275, 522, 575 |
| NcoI | CCATGG | 1 cut(s) | 29 |
| NdeII | GATC | 2 cut(s) | 103, 163 |
| NlaIII | CATG | 3 cut(s) | 33, 79, 341 |
| NlaIV | GGNNCC | 5 cut(s) | 264, 311, 414, 597, 603 |
| NmuCI | GTSAC | 1 cut(s) | 213 |
| NspV | TTCGAA | 1 cut(s) | 717 |
| PaqCI | CACCTGC | 1 cut(s) | 569 |
| PctI | GAATGC | 1 cut(s) | 682 |
| PfeI | GAWTC | 1 cut(s) | 341 |
| PkrI | GCNGC | 7 cut(s) | 10, 13, 18, 51, 183, 336, 571 |
| PshBI | ATTAAT | 1 cut(s) | 674 |
| PspN4I | GGNNCC | 5 cut(s) | 264, 311, 414, 597, 603 |
| PspPI | GGNCC | 2 cut(s) | 33, 131 |
| PstI | CTGCAG | 3 cut(s) | 13, 21, 574 |
| RsaI | GTAC | 3 cut(s) | 112, 173, 639 |
| RsaNI | GTAC | 3 cut(s) | 111, 172, 638 |
| SaqAI | TTAA | 5 cut(s) | 257, 285, 377, 674, 723 |
| SatI | GCNGC | 7 cut(s) | 9, 12, 17, 50, 182, 335, 570 |
| Sau3AI | GATC | 2 cut(s) | 103, 163 |
| Sau96I | GGNCC | 2 cut(s) | 33, 131 |
| ScaI | AGTACT | 1 cut(s) | 112 |
| SduI | GDGCHC | 1 cut(s) | 598 |
| SfaNI | GCATC | 2 cut(s) | 265, 411 |
| SfcI | CTRYAG | 3 cut(s) | 9, 17, 570 |
| SfuI | TTCGAA | 1 cut(s) | 717 |
| SinI | GGWCC | 1 cut(s) | 33 |
| Sse9I | AATT | 4 cut(s) | 125, 254, 675, 736 |
| SsiI | CCGC | 5 cut(s) | 56, 248, 525, 551, 621 |
| SspMI | CTAG | 5 cut(s) | 117, 167, 237, 366, 396 |
| StyI | CCWWGG | 1 cut(s) | 29 |
| TaiI | ACGT | 1 cut(s) | 639 |
| TaqI | TCGA | 3 cut(s) | 102, 162, 717 |
| TasI | AATT | 4 cut(s) | 125, 254, 675, 736 |
| TatI | WGTACW | 1 cut(s) | 110 |
| TfiI | GAWTC | 1 cut(s) | 341 |
| Tru1I | TTAA | 5 cut(s) | 257, 285, 377, 674, 723 |
| Tru9I | TTAA | 5 cut(s) | 257, 285, 377, 674, 723 |
| TseFI | GTSAC | 1 cut(s) | 213 |
| TseI | GCWGC | 7 cut(s) | 8, 11, 16, 49, 181, 334, 569 |
| Tsp45I | GTSAC | 1 cut(s) | 213 |
| TspDTI | ATGAA | 2 cut(s) | 354, 477 |
| TspGWI | ACGGA | 2 cut(s) | 275, 310 |
| VpaK11BI | GGWCC | 1 cut(s) | 33 |
| VspI | ATTAAT | 1 cut(s) | 674 |
| XapI | RAATTY | 1 cut(s) | 736 |
| XbaI | TCTAGA | 1 cut(s) | 166 |
| XspI | CTAG | 5 cut(s) | 117, 167, 237, 366, 396 |
| ZrmI | AGTACT | 1 cut(s) | 112 |