ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1063 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1074 |
| AccII | CGCG | 2 cut(s) | 84, 1086 |
| AciI | CCGC | 5 cut(s) | 84, 87, 175, 358, 1158 |
| AcsI | RAATTY | 5 cut(s) | 42, 197, 268, 381, 508 |
| AcuI | CTGAAG | 4 cut(s) | 171, 622, 825, 924 |
| AcyI | GRCGYC | 2 cut(s) | 79, 698 |
| AfaI | GTAC | 3 cut(s) | 353, 586, 871 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 37, 56, 63, 855, 1074, 1124, 1125 |
| AgsI | TTSAA | 3 cut(s) | 246, 694, 1167 |
| AjnI | CCWGG | 3 cut(s) | 185, 1002, 1180 |
| AluBI | AGCT | 1 cut(s) | 94 |
| AluI | AGCT | 1 cut(s) | 94 |
| Alw26I | GTCTC | 2 cut(s) | 21, 965 |
| Ama87I | CYCGRG | 1 cut(s) | 110 |
| AoxI | GGCC | 4 cut(s) | 54, 156, 1115, 1138 |
| ApaI | GGGCCC | 1 cut(s) | 1119 |
| ApeKI | GCWGC | 1 cut(s) | 180 |
| ApoI | RAATTY | 5 cut(s) | 42, 197, 268, 381, 508 |
| AseI | ATTAAT | 1 cut(s) | 462 |
| AspLEI | GCGC | 2 cut(s) | 855, 1088 |
| AspS9I | GGNCC | 7 cut(s) | 535, 687, 769, 1056, 1115, 1116, 1138 |
| AsuC2I | CCSGG | 2 cut(s) | 104, 1119 |
| AsuHPI | GGTGA | 1 cut(s) | 995 |
| AsuII | TTCGAA | 2 cut(s) | 1019, 1291 |
| AvaI | CYCGRG | 1 cut(s) | 110 |
| AvaII | GGWCC | 4 cut(s) | 535, 687, 769, 1056 |
| BaeGI | GKGCMC | 2 cut(s) | 967, 1119 |
| BanII | GRGCYC | 5 cut(s) | 111, 118, 300, 672, 1119 |
| BauI | CACGAG | 2 cut(s) | 780, 1301 |
| BbsI | GAAGAC | 2 cut(s) | 402, 1280 |
| BbvI | GCAGC | 1 cut(s) | 167 |
| BccI | CCATC | 6 cut(s) | 371, 748, 925, 1004, 1270, 1305 |
| BciT130I | CCWGG | 3 cut(s) | 187, 1004, 1182 |
| BcnI | CCSGG | 2 cut(s) | 104, 1119 |
| BcoDI | GTCTC | 2 cut(s) | 21, 965 |
| BfaI | CTAG | 2 cut(s) | 138, 738 |
| BfmI | CTRYAG | 1 cut(s) | 523 |
| BfoI | RGCGCY | 1 cut(s) | 856 |
| BglII | AGATCT | 1 cut(s) | 134 |
| BisI | GCNGC | 2 cut(s) | 85, 181 |
| BlsI | GCNGC | 2 cut(s) | 86, 182 |
| Bme1390I | CCNGG | 5 cut(s) | 104, 187, 1004, 1119, 1182 |
| Bme18I | GGWCC | 4 cut(s) | 535, 687, 769, 1056 |
| BmeT110I | CYCGRG | 1 cut(s) | 110 |
| BmgT120I | GGNCC | 7 cut(s) | 535, 687, 769, 1056, 1115, 1116, 1138 |
| BmiI | GGNNCC | 5 cut(s) | 117, 297, 1057, 1117, 1282 |
| BmrFI | CCNGG | 5 cut(s) | 104, 187, 1004, 1119, 1182 |
| BmsI | GCATC | 3 cut(s) | 211, 435, 1243 |
| BpiI | GAAGAC | 2 cut(s) | 402, 1280 |
| Bpu14I | TTCGAA | 2 cut(s) | 1019, 1291 |
| BpuEI | CTTGAG | 3 cut(s) | 421, 434, 631 |
| BpuMI | CCSGG | 2 cut(s) | 104, 1119 |
| Bsa29I | ATCGAT | 1 cut(s) | 1251 |
| BsaHI | GRCGYC | 2 cut(s) | 79, 698 |
| BsaI | GGTCTC | 1 cut(s) | 21 |
| BsaJI | CCNNGG | 4 cut(s) | 103, 185, 343, 1003 |
| BsaWI | WCCGGW | 3 cut(s) | 30, 118, 1283 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 850, 880 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 37, 56, 63, 855, 1074, 1124, 1125 |
| Bse1I | ACTGG | 1 cut(s) | 595 |
| BseBI | CCWGG | 3 cut(s) | 187, 1004, 1182 |
| BseCI | ATCGAT | 1 cut(s) | 1251 |
| BseDI | CCNNGG | 4 cut(s) | 103, 185, 343, 1003 |
| BseGI | GGATG | 4 cut(s) | 382, 450, 832, 1015 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 37, 56, 63, 855, 1074, 1124, 1125 |
| BseNI | ACTGG | 1 cut(s) | 595 |
| BseRI | GAGGAG | 1 cut(s) | 329 |
| BseSI | GKGCMC | 2 cut(s) | 967, 1119 |
| BseXI | GCAGC | 1 cut(s) | 167 |
| BseYI | CCCAGC | 2 cut(s) | 487, 938 |
| Bsh1236I | CGCG | 2 cut(s) | 84, 1086 |
| BshFI | GGCC | 4 cut(s) | 56, 158, 1117, 1140 |
| BshVI | ATCGAT | 1 cut(s) | 1251 |
| BsiHKCI | CYCGRG | 1 cut(s) | 110 |
| BsiSI | CCGG | 7 cut(s) | 31, 57, 103, 119, 856, 1119, 1284 |
| BslFI | GGGAC | 2 cut(s) | 958, 1069 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 37, 56, 63, 855, 1074, 1124, 1125 |
| BsmAI | GTCTC | 2 cut(s) | 21, 965 |
| BsmFI | GGGAC | 2 cut(s) | 958, 1069 |
| BsnI | GGCC | 4 cut(s) | 56, 158, 1117, 1140 |
| Bso31I | GGTCTC | 1 cut(s) | 21 |
| BsoBI | CYCGRG | 1 cut(s) | 110 |
| Bsp119I | TTCGAA | 2 cut(s) | 1019, 1291 |
| Bsp120I | GGGCCC | 1 cut(s) | 1115 |
| Bsp1286I | GDGCHC | 6 cut(s) | 111, 118, 300, 672, 967, 1119 |
| Bsp143I | GATC | 3 cut(s) | 73, 134, 318 |
| BspACI | CCGC | 5 cut(s) | 84, 87, 175, 358, 1158 |
| BspANI | GGCC | 4 cut(s) | 56, 158, 1117, 1140 |
| BspDI | ATCGAT | 1 cut(s) | 1251 |
| BspFNI | CGCG | 2 cut(s) | 84, 1086 |
| BspHI | TCATGA | 1 cut(s) | 1216 |
| BspLI | GGNNCC | 5 cut(s) | 117, 297, 1057, 1117, 1282 |
| BspMAI | CTGCAG | 1 cut(s) | 527 |
| BspT104I | TTCGAA | 2 cut(s) | 1019, 1291 |
| BspTNI | GGTCTC | 1 cut(s) | 21 |
| BsrI | ACTGG | 1 cut(s) | 595 |
| BssECI | CCNNGG | 4 cut(s) | 103, 185, 343, 1003 |
| BssMI | GATC | 3 cut(s) | 73, 134, 318 |
| BssNI | GRCGYC | 2 cut(s) | 79, 698 |
| BssSI | CACGAG | 2 cut(s) | 780, 1301 |
| BssT1I | CCWWGG | 1 cut(s) | 343 |
| Bst2BI | CACGAG | 2 cut(s) | 780, 1301 |
| Bst2UI | CCWGG | 3 cut(s) | 187, 1004, 1182 |
| Bst4CI | ACNGT | 4 cut(s) | 730, 1208, 1240, 1273 |
| Bst6I | CTCTTC | 1 cut(s) | 147 |
| BstACI | GRCGYC | 2 cut(s) | 79, 698 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1262 |
| BstBI | TTCGAA | 2 cut(s) | 1019, 1291 |
| BstC8I | GCNNGC | 1 cut(s) | 1084 |
| BstDEI | CTNAG | 2 cut(s) | 1193, 1311 |
| BstF5I | GGATG | 4 cut(s) | 382, 450, 832, 1015 |
| BstFNI | CGCG | 2 cut(s) | 84, 1086 |
| BstH2I | RGCGCY | 1 cut(s) | 856 |
| BstHHI | GCGC | 2 cut(s) | 855, 1088 |
| BstKTI | GATC | 3 cut(s) | 76, 137, 321 |
| BstMAI | GTCTC | 2 cut(s) | 21, 965 |
| BstMBI | GATC | 3 cut(s) | 73, 134, 318 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1262 |
| BstNI | CCWGG | 3 cut(s) | 187, 1004, 1182 |
| BstSCI | CCNGG | 5 cut(s) | 102, 185, 1002, 1117, 1180 |
| BstSFI | CTRYAG | 1 cut(s) | 523 |
| BstSLI | GKGCMC | 2 cut(s) | 967, 1119 |
| BstUI | CGCG | 2 cut(s) | 84, 1086 |
| BstV1I | GCAGC | 1 cut(s) | 167 |
| BstV2I | GAAGAC | 2 cut(s) | 402, 1280 |
| BstX2I | RGATCY | 1 cut(s) | 134 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1052 |
| BstYI | RGATCY | 1 cut(s) | 134 |
| Bsu15I | ATCGAT | 1 cut(s) | 1251 |
| BsuRI | GGCC | 4 cut(s) | 56, 158, 1117, 1140 |
| BsuTUI | ATCGAT | 1 cut(s) | 1251 |
| BtsCI | GGATG | 4 cut(s) | 382, 450, 832, 1015 |
| BtsIMutI | CAGTG | 1 cut(s) | 735 |
| Cac8I | GCNNGC | 1 cut(s) | 1084 |
| CciI | TCATGA | 1 cut(s) | 1216 |
| CfoI | GCGC | 2 cut(s) | 855, 1088 |
| Cfr13I | GGNCC | 7 cut(s) | 535, 687, 769, 1056, 1115, 1116, 1138 |
| ClaI | ATCGAT | 1 cut(s) | 1251 |
| CseI | GACGC | 2 cut(s) | 68, 687 |
| CsiI | ACCWGGT | 1 cut(s) | 1180 |
| Csp6I | GTAC | 3 cut(s) | 352, 585, 870 |
| CviAII | CATG | 8 cut(s) | 166, 539, 623, 673, 684, 810, 968, 1217 |
| CviQI | GTAC | 3 cut(s) | 352, 585, 870 |
| DdeI | CTNAG | 2 cut(s) | 1193, 1311 |
| DpnI | GATC | 3 cut(s) | 75, 136, 320 |
| DpnII | GATC | 3 cut(s) | 73, 134, 318 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1063 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1063 |
| Eam1104I | CTCTTC | 1 cut(s) | 147 |
| EarI | CTCTTC | 1 cut(s) | 147 |
| Eco130I | CCWWGG | 1 cut(s) | 343 |
| Eco24I | GRGCYC | 5 cut(s) | 111, 118, 300, 672, 1119 |
| Eco31I | GGTCTC | 1 cut(s) | 21 |
| Eco32I | GATATC | 1 cut(s) | 1110 |
| Eco47I | GGWCC | 4 cut(s) | 535, 687, 769, 1056 |
| Eco57I | CTGAAG | 4 cut(s) | 171, 622, 825, 924 |
| Eco88I | CYCGRG | 1 cut(s) | 110 |
| EcoRII | CCWGG | 3 cut(s) | 185, 1002, 1180 |
| EcoRV | GATATC | 1 cut(s) | 1110 |
| EcoT14I | CCWWGG | 1 cut(s) | 343 |
| EcoT22I | ATGCAT | 1 cut(s) | 815 |
| EcoT38I | GRGCYC | 5 cut(s) | 111, 118, 300, 672, 1119 |
| ErhI | CCWWGG | 1 cut(s) | 343 |
| FaeI | CATG | 8 cut(s) | 169, 542, 626, 676, 687, 813, 971, 1220 |
| FaqI | GGGAC | 2 cut(s) | 958, 1069 |
| FatI | CATG | 8 cut(s) | 165, 538, 622, 672, 683, 809, 967, 1216 |
| FauI | CCCGC | 3 cut(s) | 80, 168, 1151 |
| Fnu4HI | GCNGC | 2 cut(s) | 85, 181 |
| FokI | GGATG | 4 cut(s) | 389, 457, 839, 1022 |
| FriOI | GRGCYC | 5 cut(s) | 111, 118, 300, 672, 1119 |
| Fsp4HI | GCNGC | 2 cut(s) | 85, 181 |
| FspBI | CTAG | 2 cut(s) | 138, 738 |
| GlaI | GCGC | 2 cut(s) | 854, 1087 |
| GluI | GCNGC | 2 cut(s) | 85, 181 |
| GsaI | CCCAGC | 2 cut(s) | 491, 942 |
| HaeII | RGCGCY | 1 cut(s) | 856 |
| HaeIII | GGCC | 4 cut(s) | 56, 158, 1117, 1140 |
| HapII | CCGG | 7 cut(s) | 31, 57, 103, 119, 856, 1119, 1284 |
| HgaI | GACGC | 2 cut(s) | 68, 687 |
| HhaI | GCGC | 2 cut(s) | 855, 1088 |
| Hin1I | GRCGYC | 2 cut(s) | 79, 698 |
| Hin1II | CATG | 8 cut(s) | 169, 542, 626, 676, 687, 813, 971, 1220 |
| Hin6I | GCGC | 2 cut(s) | 853, 1086 |
| HinP1I | GCGC | 2 cut(s) | 853, 1086 |
| HincII | GTYRAC | 2 cut(s) | 885, 1204 |
| HindII | GTYRAC | 2 cut(s) | 885, 1204 |
| HinfI | GANTC | 8 cut(s) | 99, 169, 454, 580, 776, 788, 1094, 1232 |
| HpaII | CCGG | 7 cut(s) | 31, 57, 103, 119, 856, 1119, 1284 |
| HphI | GGTGA | 1 cut(s) | 995 |
| Hpy166II | GTNNAC | 2 cut(s) | 885, 1204 |
| Hpy188III | TCNNGA | 4 cut(s) | 451, 610, 1217, 1301 |
| Hpy8I | GTNNAC | 2 cut(s) | 885, 1204 |
| Hpy99I | CGWCG | 2 cut(s) | 84, 703 |
| HpyAV | CCTTC | 4 cut(s) | 252, 620, 688, 1031 |
| HpyCH4III | ACNGT | 4 cut(s) | 730, 1208, 1240, 1273 |
| HpyCH4IV | ACGT | 2 cut(s) | 354, 872 |
| HpyCH4V | TGCA | 6 cut(s) | 224, 525, 558, 813, 877, 1256 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1262 |
| HpyF3I | CTNAG | 2 cut(s) | 1193, 1311 |
| HpySE526I | ACGT | 2 cut(s) | 354, 872 |
| Hsp92I | GRCGYC | 2 cut(s) | 79, 698 |
| Hsp92II | CATG | 8 cut(s) | 169, 542, 626, 676, 687, 813, 971, 1220 |
| HspAI | GCGC | 2 cut(s) | 853, 1086 |
| Kzo9I | GATC | 3 cut(s) | 73, 134, 318 |
| LmnI | GCTCC | 3 cut(s) | 121, 124, 295 |
| Lsp1109I | GCAGC | 1 cut(s) | 167 |
| LweI | GCATC | 3 cut(s) | 211, 435, 1243 |
| MabI | ACCWGGT | 1 cut(s) | 1180 |
| MaeI | CTAG | 2 cut(s) | 138, 738 |
| MaeII | ACGT | 2 cut(s) | 354, 872 |
| MaeIII | GTNAC | 4 cut(s) | 335, 835, 844, 1240 |
| MalI | GATC | 3 cut(s) | 75, 136, 320 |
| MboI | GATC | 3 cut(s) | 73, 134, 318 |
| MboII | GAAGA | 7 cut(s) | 164, 407, 628, 755, 1039, 1046, 1280 |
| MflI | RGATCY | 1 cut(s) | 134 |
| MhlI | GDGCHC | 6 cut(s) | 111, 118, 300, 672, 967, 1119 |
| MlyI | GAGTC | 2 cut(s) | 93, 1226 |
| MmeI | TCCRAC | 5 cut(s) | 399, 681, 703, 1069, 1209 |
| Mph1103I | ATGCAT | 1 cut(s) | 815 |
| MseI | TTAA | 1 cut(s) | 462 |
| MslI | CAYNNNNRTG | 2 cut(s) | 164, 1274 |
| MspI | CCGG | 7 cut(s) | 31, 57, 103, 119, 856, 1119, 1284 |
| MspR9I | CCNGG | 5 cut(s) | 104, 187, 1004, 1119, 1182 |
| MvaI | CCWGG | 3 cut(s) | 187, 1004, 1182 |
| MvnI | CGCG | 2 cut(s) | 84, 1086 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1262 |
| NciI | CCSGG | 2 cut(s) | 104, 1119 |
| NdeII | GATC | 3 cut(s) | 73, 134, 318 |
| NlaIII | CATG | 8 cut(s) | 169, 542, 626, 676, 687, 813, 971, 1220 |
| NlaIV | GGNNCC | 5 cut(s) | 117, 297, 1057, 1117, 1282 |
| NmuCI | GTSAC | 1 cut(s) | 835 |
| NsiI | ATGCAT | 1 cut(s) | 815 |
| NspV | TTCGAA | 2 cut(s) | 1019, 1291 |
| PagI | TCATGA | 1 cut(s) | 1216 |
| PfeI | GAWTC | 6 cut(s) | 169, 454, 580, 776, 788, 1094 |
| PflFI | GACNNNGTC | 2 cut(s) | 685, 707 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1074 |
| PkrI | GCNGC | 2 cut(s) | 86, 182 |
| PleI | GAGTC | 2 cut(s) | 93, 1226 |
| PpsI | GAGTC | 2 cut(s) | 93, 1226 |
| PshBI | ATTAAT | 1 cut(s) | 462 |
| Psp6I | CCWGG | 3 cut(s) | 185, 1002, 1180 |
| PspFI | CCCAGC | 2 cut(s) | 487, 938 |
| PspGI | CCWGG | 3 cut(s) | 185, 1002, 1180 |
| PspN4I | GGNNCC | 5 cut(s) | 117, 297, 1057, 1117, 1282 |
| PspOMI | GGGCCC | 1 cut(s) | 1115 |
| PspPI | GGNCC | 7 cut(s) | 535, 687, 769, 1056, 1115, 1116, 1138 |
| PstI | CTGCAG | 1 cut(s) | 527 |
| PsuI | RGATCY | 1 cut(s) | 134 |
| PsyI | GACNNNGTC | 2 cut(s) | 685, 707 |
| RsaI | GTAC | 3 cut(s) | 353, 586, 871 |
| RsaNI | GTAC | 3 cut(s) | 352, 585, 870 |
| RseI | CAYNNNNRTG | 2 cut(s) | 164, 1274 |
| SaqAI | TTAA | 1 cut(s) | 462 |
| SatI | GCNGC | 2 cut(s) | 85, 181 |
| Sau3AI | GATC | 3 cut(s) | 73, 134, 318 |
| Sau96I | GGNCC | 7 cut(s) | 535, 687, 769, 1056, 1115, 1116, 1138 |
| SchI | GAGTC | 2 cut(s) | 93, 1226 |
| ScrFI | CCNGG | 5 cut(s) | 104, 187, 1004, 1119, 1182 |
| SduI | GDGCHC | 6 cut(s) | 111, 118, 300, 672, 967, 1119 |
| SexAI | ACCWGGT | 1 cut(s) | 1180 |
| SfaNI | GCATC | 3 cut(s) | 211, 435, 1243 |
| SfcI | CTRYAG | 1 cut(s) | 523 |
| SfuI | TTCGAA | 2 cut(s) | 1019, 1291 |
| SinI | GGWCC | 4 cut(s) | 535, 687, 769, 1056 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 164, 1274 |
| SmlI | CTYRAG | 3 cut(s) | 400, 449, 610 |
| SmoI | CTYRAG | 3 cut(s) | 400, 449, 610 |
| SsiI | CCGC | 5 cut(s) | 84, 87, 175, 358, 1158 |
| SspMI | CTAG | 2 cut(s) | 138, 738 |
| StyD4I | CCNGG | 5 cut(s) | 102, 185, 1002, 1117, 1180 |
| StyI | CCWWGG | 1 cut(s) | 343 |
| TaaI | ACNGT | 4 cut(s) | 730, 1208, 1240, 1273 |
| TaiI | ACGT | 2 cut(s) | 357, 875 |
| TaqI | TCGA | 5 cut(s) | 680, 711, 1019, 1251, 1291 |
| TauI | GCSGC | 1 cut(s) | 87 |
| TfiI | GAWTC | 6 cut(s) | 169, 454, 580, 776, 788, 1094 |
| Tru1I | TTAA | 1 cut(s) | 462 |
| Tru9I | TTAA | 1 cut(s) | 462 |
| TscAI | CASTG | 1 cut(s) | 735 |
| TseFI | GTSAC | 1 cut(s) | 835 |
| TseI | GCWGC | 1 cut(s) | 180 |
| Tsp45I | GTSAC | 1 cut(s) | 835 |
| TspDTI | ATGAA | 4 cut(s) | 639, 689, 1205, 1233 |
| TspGWI | ACGGA | 1 cut(s) | 326 |
| TspRI | CASTG | 1 cut(s) | 735 |
| Tth111I | GACNNNGTC | 2 cut(s) | 685, 707 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1074 |
| VpaK11BI | GGWCC | 4 cut(s) | 535, 687, 769, 1056 |
| VspI | ATTAAT | 1 cut(s) | 462 |
| XapI | RAATTY | 5 cut(s) | 42, 197, 268, 381, 508 |
| XspI | CTAG | 2 cut(s) | 138, 738 |
| Zsp2I | ATGCAT | 1 cut(s) | 815 |