Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 155 - 200 | 1.7e-08 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 834 |
| AccB1I | GGYRCC | 1 cut(s) | 834 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1154 |
| AccBSI | CCGCTC | 1 cut(s) | 1042 |
| AccI | GTMKAC | 1 cut(s) | 1225 |
| AccIII | TCCGGA | 1 cut(s) | 907 |
| AciI | CCGC | 3 cut(s) | 332, 564, 1042 |
| AclWI | GGATC | 5 cut(s) | 163, 333, 918, 1140, 1190 |
| AcsI | RAATTY | 3 cut(s) | 165, 740, 903 |
| AdeI | CACNNNGTG | 1 cut(s) | 588 |
| AfaI | GTAC | 3 cut(s) | 217, 646, 836 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 283, 1154, 1235, 1256, 1268, 1428 |
| AgsI | TTSAA | 5 cut(s) | 41, 97, 464, 1027, 1305 |
| AjnI | CCWGG | 3 cut(s) | 965, 1198, 1249 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 873, 905, 1330, 1362 |
| AluBI | AGCT | 2 cut(s) | 467, 749 |
| AluI | AGCT | 2 cut(s) | 467, 749 |
| Alw26I | GTCTC | 1 cut(s) | 192 |
| AlwI | GGATC | 5 cut(s) | 163, 333, 918, 1140, 1190 |
| Aor13HI | TCCGGA | 1 cut(s) | 907 |
| AoxI | GGCC | 7 cut(s) | 12, 872, 1157, 1180, 1247, 1259, 1431 |
| ApaI | GGGCCC | 1 cut(s) | 1435 |
| ApeKI | GCWGC | 1 cut(s) | 952 |
| ApoI | RAATTY | 3 cut(s) | 165, 740, 903 |
| Asp718I | GGTACC | 1 cut(s) | 834 |
| AspA2I | CCTAGG | 1 cut(s) | 1229 |
| AspS9I | GGNCC | 6 cut(s) | 872, 1157, 1181, 1259, 1431, 1432 |
| AsuHPI | GGTGA | 7 cut(s) | 523, 565, 574, 597, 676, 695, 1436 |
| AsuII | TTCGAA | 1 cut(s) | 303 |
| AvrII | CCTAGG | 1 cut(s) | 1229 |
| AxyI | CCTNAGG | 1 cut(s) | 279 |
| BaeGI | GKGCMC | 1 cut(s) | 1435 |
| BanI | GGYRCC | 1 cut(s) | 834 |
| BanII | GRGCYC | 3 cut(s) | 1241, 1421, 1435 |
| BauI | CACGAG | 2 cut(s) | 586, 1439 |
| BbsI | GAAGAC | 1 cut(s) | 524 |
| BbvI | GCAGC | 1 cut(s) | 964 |
| BciT130I | CCWGG | 3 cut(s) | 967, 1200, 1251 |
| BcoDI | GTCTC | 1 cut(s) | 192 |
| BfaI | CTAG | 3 cut(s) | 251, 1230, 1245 |
| BisI | GCNGC | 1 cut(s) | 953 |
| BlnI | CCTAGG | 1 cut(s) | 1229 |
| BlsI | GCNGC | 1 cut(s) | 954 |
| Bme1390I | CCNGG | 3 cut(s) | 967, 1200, 1251 |
| BmgT120I | GGNCC | 6 cut(s) | 872, 1157, 1181, 1259, 1431, 1432 |
| BmiI | GGNNCC | 6 cut(s) | 756, 836, 924, 1299, 1420, 1433 |
| BmrFI | CCNGG | 3 cut(s) | 967, 1200, 1251 |
| BmrI | ACTGGG | 1 cut(s) | 1266 |
| BmuI | ACTGGG | 1 cut(s) | 1266 |
| BpiI | GAAGAC | 1 cut(s) | 524 |
| BpmI | CTGGAG | 1 cut(s) | 33 |
| Bpu14I | TTCGAA | 1 cut(s) | 303 |
| Bsa29I | ATCGAT | 1 cut(s) | 818 |
| BsaJI | CCNNGG | 4 cut(s) | 221, 1199, 1229, 1250 |
| BsaWI | WCCGGW | 4 cut(s) | 837, 878, 907, 1421 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 873, 903 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 283, 1154, 1235, 1256, 1268, 1428 |
| Bse1I | ACTGG | 1 cut(s) | 1261 |
| Bse21I | CCTNAGG | 1 cut(s) | 279 |
| BseAI | TCCGGA | 1 cut(s) | 907 |
| BseBI | CCWGG | 3 cut(s) | 967, 1200, 1251 |
| BseCI | ATCGAT | 1 cut(s) | 818 |
| BseDI | CCNNGG | 4 cut(s) | 221, 1199, 1229, 1250 |
| BseGI | GGATG | 4 cut(s) | 217, 268, 740, 975 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 283, 1154, 1235, 1256, 1268, 1428 |
| BseMII | CTCAG | 2 cut(s) | 714, 1350 |
| BseNI | ACTGG | 1 cut(s) | 1261 |
| BseRI | GAGGAG | 1 cut(s) | 459 |
| BseSI | GKGCMC | 1 cut(s) | 1435 |
| BseXI | GCAGC | 1 cut(s) | 964 |
| BsgI | GTGCAG | 3 cut(s) | 27, 696, 709 |
| BshFI | GGCC | 7 cut(s) | 14, 874, 1159, 1182, 1249, 1261, 1433 |
| BshNI | GGYRCC | 1 cut(s) | 834 |
| BshVI | ATCGAT | 1 cut(s) | 818 |
| BsiSI | CCGG | 5 cut(s) | 838, 879, 908, 1160, 1422 |
| BsiWI | CGTACG | 1 cut(s) | 644 |
| BslFI | GGGAC | 2 cut(s) | 122, 1267 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 283, 1154, 1235, 1256, 1268, 1428 |
| BsmAI | GTCTC | 1 cut(s) | 192 |
| BsmFI | GGGAC | 2 cut(s) | 122, 1267 |
| BsnI | GGCC | 7 cut(s) | 14, 874, 1159, 1182, 1249, 1261, 1433 |
| Bsp119I | TTCGAA | 1 cut(s) | 303 |
| Bsp120I | GGGCCC | 1 cut(s) | 1431 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1241, 1421, 1435 |
| Bsp13I | TCCGGA | 1 cut(s) | 907 |
| Bsp19I | CCATGG | 1 cut(s) | 221 |
| BspACI | CCGC | 3 cut(s) | 332, 564, 1042 |
| BspANI | GGCC | 7 cut(s) | 14, 874, 1159, 1182, 1249, 1261, 1433 |
| BspCNI | CTCAG | 2 cut(s) | 715, 1351 |
| BspDI | ATCGAT | 1 cut(s) | 818 |
| BspEI | TCCGGA | 1 cut(s) | 907 |
| BspLI | GGNNCC | 6 cut(s) | 756, 836, 924, 1299, 1420, 1433 |
| BspPI | GGATC | 5 cut(s) | 163, 333, 918, 1140, 1190 |
| BspT104I | TTCGAA | 1 cut(s) | 303 |
| BspT107I | GGYRCC | 1 cut(s) | 834 |
| BsrBI | CCGCTC | 1 cut(s) | 1042 |
| BsrI | ACTGG | 1 cut(s) | 1261 |
| BssECI | CCNNGG | 4 cut(s) | 221, 1199, 1229, 1250 |
| BssSI | CACGAG | 2 cut(s) | 586, 1439 |
| BssT1I | CCWWGG | 2 cut(s) | 221, 1229 |
| Bst2BI | CACGAG | 2 cut(s) | 586, 1439 |
| Bst2UI | CCWGG | 3 cut(s) | 967, 1200, 1251 |
| Bst4CI | ACNGT | 2 cut(s) | 523, 649 |
| Bst6I | CTCTTC | 2 cut(s) | 477, 781 |
| BstBI | TTCGAA | 1 cut(s) | 303 |
| BstC8I | GCNNGC | 1 cut(s) | 362 |
| BstDEI | CTNAG | 4 cut(s) | 279, 723, 1308, 1359 |
| BstDSI | CCRYGG | 1 cut(s) | 221 |
| BstF5I | GGATG | 4 cut(s) | 217, 268, 740, 975 |
| BstMAI | GTCTC | 1 cut(s) | 192 |
| BstNI | CCWGG | 3 cut(s) | 967, 1200, 1251 |
| BstSCI | CCNGG | 3 cut(s) | 965, 1198, 1249 |
| BstSLI | GKGCMC | 1 cut(s) | 1435 |
| BstV1I | GCAGC | 1 cut(s) | 964 |
| BstV2I | GAAGAC | 1 cut(s) | 524 |
| BstX2I | RGATCY | 3 cut(s) | 155, 325, 1132 |
| BstYI | RGATCY | 3 cut(s) | 155, 325, 1132 |
| Bsu15I | ATCGAT | 1 cut(s) | 818 |
| Bsu36I | CCTNAGG | 1 cut(s) | 279 |
| BsuRI | GGCC | 7 cut(s) | 14, 874, 1159, 1182, 1249, 1261, 1433 |
| BsuTUI | ATCGAT | 1 cut(s) | 818 |
| BtgI | CCRYGG | 1 cut(s) | 221 |
| BtsCI | GGATG | 4 cut(s) | 217, 268, 740, 975 |
| Cac8I | GCNNGC | 1 cut(s) | 362 |
| Cfr13I | GGNCC | 6 cut(s) | 872, 1157, 1181, 1259, 1431, 1432 |
| ClaI | ATCGAT | 1 cut(s) | 818 |
| Csp6I | GTAC | 3 cut(s) | 216, 645, 835 |
| CviAII | CATG | 2 cut(s) | 222, 578 |
| CviQI | GTAC | 3 cut(s) | 216, 645, 835 |
| DdeI | CTNAG | 4 cut(s) | 279, 723, 1308, 1359 |
| DraI | TTTAAA | 1 cut(s) | 1282 |
| DraIII | CACNNNGTG | 1 cut(s) | 588 |
| Eam1104I | CTCTTC | 2 cut(s) | 477, 781 |
| EarI | CTCTTC | 2 cut(s) | 477, 781 |
| EciI | GGCGGA | 1 cut(s) | 321 |
| Eco130I | CCWWGG | 2 cut(s) | 221, 1229 |
| Eco147I | AGGCCT | 1 cut(s) | 1249 |
| Eco24I | GRGCYC | 3 cut(s) | 1241, 1421, 1435 |
| Eco81I | CCTNAGG | 1 cut(s) | 279 |
| EcoRII | CCWGG | 3 cut(s) | 965, 1198, 1249 |
| EcoT14I | CCWWGG | 2 cut(s) | 221, 1229 |
| EcoT38I | GRGCYC | 3 cut(s) | 1241, 1421, 1435 |
| ErhI | CCWWGG | 2 cut(s) | 221, 1229 |
| FaeI | CATG | 2 cut(s) | 225, 581 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 456, 488 |
| FaqI | GGGAC | 2 cut(s) | 122, 1267 |
| FatI | CATG | 2 cut(s) | 221, 577 |
| FauI | CCCGC | 1 cut(s) | 1035 |
| FauNDI | CATATG | 1 cut(s) | 957 |
| FblI | GTMKAC | 1 cut(s) | 1225 |
| Fnu4HI | GCNGC | 1 cut(s) | 953 |
| FokI | GGATG | 4 cut(s) | 224, 275, 747, 982 |
| FriOI | GRGCYC | 3 cut(s) | 1241, 1421, 1435 |
| Fsp4HI | GCNGC | 1 cut(s) | 953 |
| FspBI | CTAG | 3 cut(s) | 251, 1230, 1245 |
| GluI | GCNGC | 1 cut(s) | 953 |
| GsuI | CTGGAG | 1 cut(s) | 33 |
| HaeIII | GGCC | 7 cut(s) | 14, 874, 1159, 1182, 1249, 1261, 1433 |
| HapII | CCGG | 5 cut(s) | 838, 879, 908, 1160, 1422 |
| Hin1II | CATG | 2 cut(s) | 225, 581 |
| HincII | GTYRAC | 2 cut(s) | 346, 1226 |
| HindII | GTYRAC | 2 cut(s) | 346, 1226 |
| HinfI | GANTC | 4 cut(s) | 447, 761, 974, 1023 |
| HpaII | CCGG | 5 cut(s) | 838, 879, 908, 1160, 1422 |
| HphI | GGTGA | 7 cut(s) | 523, 565, 574, 597, 676, 695, 1436 |
| Hpy166II | GTNNAC | 5 cut(s) | 316, 346, 667, 1226, 1349 |
| Hpy8I | GTNNAC | 5 cut(s) | 316, 346, 667, 1226, 1349 |
| HpyAV | CCTTC | 8 cut(s) | 721, 929, 1003, 1040, 1228, 1288, 1311, 1312 |
| HpyCH4III | ACNGT | 2 cut(s) | 523, 649 |
| HpyCH4IV | ACGT | 1 cut(s) | 1345 |
| HpyCH4V | TGCA | 5 cut(s) | 8, 118, 378, 677, 690 |
| HpyF3I | CTNAG | 4 cut(s) | 279, 723, 1308, 1359 |
| HpySE526I | ACGT | 1 cut(s) | 1345 |
| Hsp92II | CATG | 2 cut(s) | 225, 581 |
| Kpn2I | TCCGGA | 1 cut(s) | 907 |
| KpnI | GGTACC | 1 cut(s) | 838 |
| LmnI | GCTCC | 3 cut(s) | 472, 922, 1424 |
| Lsp1109I | GCAGC | 1 cut(s) | 964 |
| MaeI | CTAG | 3 cut(s) | 251, 1230, 1245 |
| MaeII | ACGT | 1 cut(s) | 1345 |
| MaeIII | GTNAC | 3 cut(s) | 428, 580, 603 |
| MbiI | CCGCTC | 1 cut(s) | 1042 |
| MflI | RGATCY | 3 cut(s) | 155, 325, 1132 |
| MhlI | GDGCHC | 3 cut(s) | 1241, 1421, 1435 |
| MlyI | GAGTC | 1 cut(s) | 456 |
| MroI | TCCGGA | 1 cut(s) | 907 |
| MseI | TTAA | 7 cut(s) | 455, 486, 710, 929, 942, 984, 1281 |
| MspI | CCGG | 5 cut(s) | 838, 879, 908, 1160, 1422 |
| MspR9I | CCNGG | 3 cut(s) | 967, 1200, 1251 |
| MvaI | CCWGG | 3 cut(s) | 967, 1200, 1251 |
| NcoI | CCATGG | 1 cut(s) | 221 |
| NdeI | CATATG | 1 cut(s) | 957 |
| NlaIII | CATG | 2 cut(s) | 225, 581 |
| NlaIV | GGNNCC | 6 cut(s) | 756, 836, 924, 1299, 1420, 1433 |
| NmeAIII | GCCGAG | 1 cut(s) | 40 |
| NmuCI | GTSAC | 2 cut(s) | 580, 603 |
| NspV | TTCGAA | 1 cut(s) | 303 |
| PceI | AGGCCT | 1 cut(s) | 1249 |
| PfeI | GAWTC | 3 cut(s) | 761, 974, 1023 |
| Pfl23II | CGTACG | 1 cut(s) | 644 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1154 |
| PkrI | GCNGC | 1 cut(s) | 954 |
| PleI | GAGTC | 1 cut(s) | 455 |
| PpsI | GAGTC | 1 cut(s) | 455 |
| Psp6I | CCWGG | 3 cut(s) | 965, 1198, 1249 |
| PspGI | CCWGG | 3 cut(s) | 965, 1198, 1249 |
| PspLI | CGTACG | 1 cut(s) | 644 |
| PspN4I | GGNNCC | 6 cut(s) | 756, 836, 924, 1299, 1420, 1433 |
| PspOMI | GGGCCC | 1 cut(s) | 1431 |
| PspPI | GGNCC | 6 cut(s) | 872, 1157, 1181, 1259, 1431, 1432 |
| PsuI | RGATCY | 3 cut(s) | 155, 325, 1132 |
| RsaI | GTAC | 3 cut(s) | 217, 646, 836 |
| RsaNI | GTAC | 3 cut(s) | 216, 645, 835 |
| SalI | GTCGAC | 1 cut(s) | 1224 |
| SaqAI | TTAA | 7 cut(s) | 455, 486, 710, 929, 942, 984, 1281 |
| SatI | GCNGC | 1 cut(s) | 953 |
| Sau96I | GGNCC | 6 cut(s) | 872, 1157, 1181, 1259, 1431, 1432 |
| SchI | GAGTC | 1 cut(s) | 456 |
| ScrFI | CCNGG | 3 cut(s) | 967, 1200, 1251 |
| SduI | GDGCHC | 3 cut(s) | 1241, 1421, 1435 |
| SfuI | TTCGAA | 1 cut(s) | 303 |
| SseBI | AGGCCT | 1 cut(s) | 1249 |
| SsiI | CCGC | 3 cut(s) | 332, 564, 1042 |
| SspMI | CTAG | 3 cut(s) | 251, 1230, 1245 |
| StuI | AGGCCT | 1 cut(s) | 1249 |
| StyD4I | CCNGG | 3 cut(s) | 965, 1198, 1249 |
| StyI | CCWWGG | 2 cut(s) | 221, 1229 |
| TaaI | ACNGT | 2 cut(s) | 523, 649 |
| TaiI | ACGT | 1 cut(s) | 1348 |
| TaqI | TCGA | 9 cut(s) | 231, 303, 440, 528, 627, 782, 818, 1225, 1400 |
| TfiI | GAWTC | 3 cut(s) | 761, 974, 1023 |
| Tru1I | TTAA | 7 cut(s) | 455, 486, 710, 929, 942, 984, 1281 |
| Tru9I | TTAA | 7 cut(s) | 455, 486, 710, 929, 942, 984, 1281 |
| TseFI | GTSAC | 2 cut(s) | 580, 603 |
| TseI | GCWGC | 1 cut(s) | 952 |
| Tsp45I | GTSAC | 2 cut(s) | 580, 603 |
| TspDTI | ATGAA | 2 cut(s) | 549, 753 |
| TspGWI | ACGGA | 2 cut(s) | 275, 1399 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1154 |
| XapI | RAATTY | 3 cut(s) | 165, 740, 903 |
| XbaI | TCTAGA | 1 cut(s) | 250 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 616 |
| XmaJI | CCTAGG | 1 cut(s) | 1229 |
| XmiI | GTMKAC | 1 cut(s) | 1225 |
| XspI | CTAG | 3 cut(s) | 251, 1230, 1245 |