Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 247, 364 |
| AccI | GTMKAC | 1 cut(s) | 307 |
| AccII | CGCG | 1 cut(s) | 539 |
| AciI | CCGC | 3 cut(s) | 119, 401, 539 |
| AclI | AACGTT | 1 cut(s) | 166 |
| AclWI | GGATC | 3 cut(s) | 45, 348, 416 |
| AcuI | CTGAAG | 1 cut(s) | 170 |
| AcyI | GRCGYC | 1 cut(s) | 365 |
| AfaI | GTAC | 2 cut(s) | 229, 536 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 23, 24 |
| AgsI | TTSAA | 3 cut(s) | 158, 380, 430 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 288 |
| AjnI | CCWGG | 1 cut(s) | 5 |
| AluBI | AGCT | 3 cut(s) | 97, 154, 523 |
| AluI | AGCT | 3 cut(s) | 97, 154, 523 |
| Alw26I | GTCTC | 3 cut(s) | 279, 439, 465 |
| AlwI | GGATC | 3 cut(s) | 45, 348, 416 |
| AoxI | GGCC | 2 cut(s) | 238, 500 |
| AspLEI | GCGC | 2 cut(s) | 103, 367 |
| AsuC2I | CCSGG | 2 cut(s) | 209, 263 |
| AsuHPI | GGTGA | 2 cut(s) | 415, 518 |
| AsuNHI | GCTAGC | 1 cut(s) | 257 |
| BanI | GGYRCC | 2 cut(s) | 247, 364 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 188, 220 |
| BccI | CCATC | 2 cut(s) | 26, 404 |
| BciT130I | CCWGG | 1 cut(s) | 7 |
| BclI | TGATCA | 1 cut(s) | 222 |
| BcnI | CCSGG | 2 cut(s) | 209, 263 |
| BcoDI | GTCTC | 3 cut(s) | 279, 439, 465 |
| BfaI | CTAG | 1 cut(s) | 258 |
| BfmI | CTRYAG | 2 cut(s) | 396, 571 |
| BfoI | RGCGCY | 1 cut(s) | 368 |
| Bme1390I | CCNGG | 3 cut(s) | 7, 209, 263 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 288 |
| BmiI | GGNNCC | 2 cut(s) | 249, 366 |
| BmrFI | CCNGG | 3 cut(s) | 7, 209, 263 |
| BmsI | GCATC | 2 cut(s) | 244, 322 |
| BmtI | GCTAGC | 1 cut(s) | 261 |
| BpuMI | CCSGG | 2 cut(s) | 209, 263 |
| BsaHI | GRCGYC | 1 cut(s) | 365 |
| BsaI | GGTCTC | 1 cut(s) | 279 |
| BsaJI | CCNNGG | 1 cut(s) | 368 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 23, 24 |
| BseBI | CCWGG | 1 cut(s) | 7 |
| BseDI | CCNNGG | 1 cut(s) | 368 |
| BseGI | GGATG | 1 cut(s) | 415 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 23, 24 |
| BseMII | CTCAG | 1 cut(s) | 342 |
| Bsh1236I | CGCG | 1 cut(s) | 539 |
| Bsh1285I | CGRYCG | 1 cut(s) | 553 |
| BshFI | GGCC | 2 cut(s) | 240, 502 |
| BshNI | GGYRCC | 2 cut(s) | 247, 364 |
| BsiEI | CGRYCG | 1 cut(s) | 553 |
| BsiSI | CCGG | 2 cut(s) | 208, 263 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 23, 24 |
| BsmAI | GTCTC | 3 cut(s) | 279, 439, 465 |
| BsnI | GGCC | 2 cut(s) | 240, 502 |
| Bso31I | GGTCTC | 1 cut(s) | 279 |
| Bsp143I | GATC | 6 cut(s) | 37, 222, 268, 340, 421, 550 |
| BspACI | CCGC | 3 cut(s) | 119, 401, 539 |
| BspANI | GGCC | 2 cut(s) | 240, 502 |
| BspCNI | CTCAG | 1 cut(s) | 341 |
| BspFNI | CGCG | 1 cut(s) | 539 |
| BspLI | GGNNCC | 2 cut(s) | 249, 366 |
| BspOI | GCTAGC | 1 cut(s) | 261 |
| BspPI | GGATC | 3 cut(s) | 45, 348, 416 |
| BspT107I | GGYRCC | 2 cut(s) | 247, 364 |
| BspTNI | GGTCTC | 1 cut(s) | 279 |
| BssECI | CCNNGG | 1 cut(s) | 368 |
| BssMI | GATC | 6 cut(s) | 37, 222, 268, 340, 421, 550 |
| BssNI | GRCGYC | 1 cut(s) | 365 |
| BssT1I | CCWWGG | 1 cut(s) | 368 |
| Bst2UI | CCWGG | 1 cut(s) | 7 |
| Bst4CI | ACNGT | 5 cut(s) | 286, 312, 450, 517, 575 |
| BstACI | GRCGYC | 1 cut(s) | 365 |
| BstC8I | GCNNGC | 2 cut(s) | 99, 259 |
| BstDEI | CTNAG | 2 cut(s) | 48, 328 |
| BstF5I | GGATG | 1 cut(s) | 415 |
| BstFNI | CGCG | 1 cut(s) | 539 |
| BstH2I | RGCGCY | 1 cut(s) | 368 |
| BstHHI | GCGC | 2 cut(s) | 103, 367 |
| BstKTI | GATC | 6 cut(s) | 40, 225, 271, 343, 424, 553 |
| BstMAI | GTCTC | 3 cut(s) | 279, 439, 465 |
| BstMBI | GATC | 6 cut(s) | 37, 222, 268, 340, 421, 550 |
| BstMCI | CGRYCG | 1 cut(s) | 553 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 263, 392 |
| BstNI | CCWGG | 1 cut(s) | 7 |
| BstSCI | CCNGG | 3 cut(s) | 5, 207, 261 |
| BstSFI | CTRYAG | 2 cut(s) | 396, 571 |
| BstUI | CGCG | 1 cut(s) | 539 |
| BstX2I | RGATCY | 2 cut(s) | 37, 340 |
| BstYI | RGATCY | 2 cut(s) | 37, 340 |
| BsuRI | GGCC | 2 cut(s) | 240, 502 |
| BtsCI | GGATG | 1 cut(s) | 415 |
| Cac8I | GCNNGC | 2 cut(s) | 99, 259 |
| CfoI | GCGC | 2 cut(s) | 103, 367 |
| CseI | GACGC | 1 cut(s) | 115 |
| Csp6I | GTAC | 2 cut(s) | 228, 535 |
| CviJI | RGCY | 9 cut(s) | 84, 97, 154, 240, 261, 266, 414, 502, 523 |
| CviKI_1 | RGCY | 9 cut(s) | 84, 97, 154, 240, 261, 266, 414, 502, 523 |
| CviQI | GTAC | 2 cut(s) | 228, 535 |
| DdeI | CTNAG | 2 cut(s) | 48, 328 |
| DinI | GGCGCC | 1 cut(s) | 366 |
| DpnI | GATC | 6 cut(s) | 39, 224, 270, 342, 423, 552 |
| DpnII | GATC | 6 cut(s) | 37, 222, 268, 340, 421, 550 |
| DriI | GACNNNNNGTC | 1 cut(s) | 288 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 288 |
| Eco130I | CCWWGG | 1 cut(s) | 368 |
| Eco147I | AGGCCT | 1 cut(s) | 240 |
| Eco31I | GGTCTC | 1 cut(s) | 279 |
| Eco57I | CTGAAG | 1 cut(s) | 170 |
| EcoRII | CCWGG | 1 cut(s) | 5 |
| EcoT14I | CCWWGG | 1 cut(s) | 368 |
| EgeI | GGCGCC | 1 cut(s) | 366 |
| EheI | GGCGCC | 1 cut(s) | 366 |
| ErhI | CCWWGG | 1 cut(s) | 368 |
| FaiI | YATR | 5 cut(s) | 65, 296, 398, 467, 531 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 352, 384 |
| FauI | CCCGC | 1 cut(s) | 532 |
| FbaI | TGATCA | 1 cut(s) | 222 |
| FblI | GTMKAC | 1 cut(s) | 307 |
| FokI | GGATG | 1 cut(s) | 422 |
| FspBI | CTAG | 1 cut(s) | 258 |
| GlaI | GCGC | 2 cut(s) | 102, 366 |
| HaeII | RGCGCY | 1 cut(s) | 368 |
| HaeIII | GGCC | 2 cut(s) | 240, 502 |
| HapII | CCGG | 2 cut(s) | 208, 263 |
| HgaI | GACGC | 1 cut(s) | 115 |
| HhaI | GCGC | 2 cut(s) | 103, 367 |
| Hin1I | GRCGYC | 1 cut(s) | 365 |
| Hin6I | GCGC | 2 cut(s) | 101, 365 |
| HinP1I | GCGC | 2 cut(s) | 101, 365 |
| HincII | GTYRAC | 1 cut(s) | 568 |
| HindII | GTYRAC | 1 cut(s) | 568 |
| HindIII | AAGCTT | 2 cut(s) | 95, 152 |
| HinfI | GANTC | 2 cut(s) | 215, 460 |
| HpaI | GTTAAC | 1 cut(s) | 568 |
| HpaII | CCGG | 2 cut(s) | 208, 263 |
| HphI | GGTGA | 2 cut(s) | 415, 518 |
| Hpy166II | GTNNAC | 2 cut(s) | 308, 568 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 331, 340 |
| Hpy8I | GTNNAC | 2 cut(s) | 308, 568 |
| HpyCH4III | ACNGT | 5 cut(s) | 286, 312, 450, 517, 575 |
| HpyCH4IV | ACGT | 2 cut(s) | 166, 230 |
| HpyCH4V | TGCA | 1 cut(s) | 442 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 263, 392 |
| HpyF3I | CTNAG | 2 cut(s) | 48, 328 |
| HpySE526I | ACGT | 2 cut(s) | 166, 230 |
| Hsp92I | GRCGYC | 1 cut(s) | 365 |
| HspAI | GCGC | 2 cut(s) | 101, 365 |
| KasI | GGCGCC | 1 cut(s) | 364 |
| Ksp22I | TGATCA | 1 cut(s) | 222 |
| KspAI | GTTAAC | 1 cut(s) | 568 |
| Kzo9I | GATC | 6 cut(s) | 37, 222, 268, 340, 421, 550 |
| LpnPI | CCDG | 5 cut(s) | 19, 221, 264, 276, 329 |
| LweI | GCATC | 2 cut(s) | 244, 322 |
| MaeI | CTAG | 1 cut(s) | 258 |
| MaeII | ACGT | 2 cut(s) | 166, 230 |
| MaeIII | GTNAC | 5 cut(s) | 43, 290, 355, 403, 511 |
| MalI | GATC | 6 cut(s) | 39, 224, 270, 342, 423, 552 |
| MboI | GATC | 6 cut(s) | 37, 222, 268, 340, 421, 550 |
| MboII | GAAGA | 3 cut(s) | 154, 163, 208 |
| MflI | RGATCY | 2 cut(s) | 37, 340 |
| Mly113I | GGCGCC | 1 cut(s) | 365 |
| MlyI | GAGTC | 1 cut(s) | 224 |
| MmeI | TCCRAC | 2 cut(s) | 93, 160 |
| MnlI | CCTC | 7 cut(s) | 22, 24, 61, 118, 185, 230, 292 |
| MseI | TTAA | 2 cut(s) | 567, 580 |
| MspI | CCGG | 2 cut(s) | 208, 263 |
| MspR9I | CCNGG | 3 cut(s) | 7, 209, 263 |
| MvaI | CCWGG | 1 cut(s) | 7 |
| MvnI | CGCG | 1 cut(s) | 539 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 263, 392 |
| NarI | GGCGCC | 1 cut(s) | 365 |
| NciI | CCSGG | 2 cut(s) | 209, 263 |
| NdeII | GATC | 6 cut(s) | 37, 222, 268, 340, 421, 550 |
| NheI | GCTAGC | 1 cut(s) | 257 |
| NlaIV | GGNNCC | 2 cut(s) | 249, 366 |
| NmuCI | GTSAC | 4 cut(s) | 43, 290, 403, 511 |
| PceI | AGGCCT | 1 cut(s) | 240 |
| PfeI | GAWTC | 1 cut(s) | 460 |
| PflFI | GACNNNGTC | 1 cut(s) | 109 |
| Ple19I | CGATCG | 1 cut(s) | 553 |
| PleI | GAGTC | 1 cut(s) | 223 |
| PluTI | GGCGCC | 1 cut(s) | 368 |
| PpsI | GAGTC | 1 cut(s) | 223 |
| Psp1406I | AACGTT | 1 cut(s) | 166 |
| Psp6I | CCWGG | 1 cut(s) | 5 |
| PspGI | CCWGG | 1 cut(s) | 5 |
| PspN4I | GGNNCC | 2 cut(s) | 249, 366 |
| PsuI | RGATCY | 2 cut(s) | 37, 340 |
| PsyI | GACNNNGTC | 1 cut(s) | 109 |
| PvuI | CGATCG | 1 cut(s) | 553 |
| RsaI | GTAC | 2 cut(s) | 229, 536 |
| RsaNI | GTAC | 2 cut(s) | 228, 535 |
| SaqAI | TTAA | 2 cut(s) | 567, 580 |
| Sau3AI | GATC | 6 cut(s) | 37, 222, 268, 340, 421, 550 |
| SchI | GAGTC | 1 cut(s) | 224 |
| ScrFI | CCNGG | 3 cut(s) | 7, 209, 263 |
| SetI | ASST | 7 cut(s) | 99, 129, 156, 163, 169, 233, 525 |
| SfaNI | GCATC | 2 cut(s) | 244, 322 |
| SfcI | CTRYAG | 2 cut(s) | 396, 571 |
| SfoI | GGCGCC | 1 cut(s) | 366 |
| SseBI | AGGCCT | 1 cut(s) | 240 |
| SsiI | CCGC | 3 cut(s) | 119, 401, 539 |
| SspDI | GGCGCC | 1 cut(s) | 364 |
| SspMI | CTAG | 1 cut(s) | 258 |
| StuI | AGGCCT | 1 cut(s) | 240 |
| StyD4I | CCNGG | 3 cut(s) | 5, 207, 261 |
| StyI | CCWWGG | 1 cut(s) | 368 |
| TaaI | ACNGT | 5 cut(s) | 286, 312, 450, 517, 575 |
| TaiI | ACGT | 2 cut(s) | 169, 233 |
| TaqII | GACCGA | 1 cut(s) | 261 |
| TfiI | GAWTC | 1 cut(s) | 460 |
| Tru1I | TTAA | 2 cut(s) | 567, 580 |
| Tru9I | TTAA | 2 cut(s) | 567, 580 |
| TseFI | GTSAC | 4 cut(s) | 43, 290, 403, 511 |
| Tsp45I | GTSAC | 4 cut(s) | 43, 290, 403, 511 |
| TspGWI | ACGGA | 1 cut(s) | 422 |
| Tth111I | GACNNNGTC | 1 cut(s) | 109 |
| XmiI | GTMKAC | 1 cut(s) | 307 |
| XspI | CTAG | 1 cut(s) | 258 |