Rh6DG308300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000022
Physical Location & Seq
Reverse (-)
50873613 .. 50881818
8206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG308300.1

Sequence Viewer

Length: 1632 bp
ATGGAAGACTTAGTTAGCCGTTTTGTTAACAACCTCGCCCTCACCGATGAGGAAAAGGTTGAGTTGGTCCTGGATTCTGATGTGGGTGCTACCACACAAACCAGGCATTTGTTGGTAGGTCTGGTCCTCAGCCCAAAACCCATTTGCAGAGGTGGTCTACTTAAGATCTTCTGGAATGTCTGGAAAGATAATGGCCTTCATGTGGGTGGTCTGGGTGAAGGCAAGTTGATTTTTGAAGTCTCCTCTGAAGTAATCAAGTCTAGGATCTTAAGGGGGGGTCCTTGGTCCTTTGATAAAGCTCTGTTGGTGTTGGCTGATGCGAATGGAAGGGGTCCCCCGATTTCGATCCCCTTAACAACGGGTTATTTCTGGGTACAAGTTCATGGCCTCGACCCCGAAGATATGACTGAGGAGGTTGGTCAACTTGCAGGGAGATGTCTTGGCCAATACAGAGAGACTGATCTTGGTGAAGCTGGTGTTTGTATATCTGATTACTTACGCGTCAGAGTGGGGATTGACGTCTTCAAGCCTATTAAGCGCTTTGTCAAGCTCAAAATCATTAATAGGTCGAGGTTTTATGAAATTAGGTATGAAAAACTCCCCTTTTTCTGTTTCATTTGTGGGCGACTTGATCACGTTGAAGGGGATTGCAATAAACGAGATAGTTCTTTATGTATCACCCATCAAAGGCAATTTGGTGATTTCCTAAGAGCAGAGCATGAAGGACCTATGTTCAAAAACCGCCATCAACTACGTTTCTTTGAGCCAATGAAACCAGCTTGGTCGTTGAAGGCACCGGAGTTTGTTGATTCTGTCTCTGGTTTTGCTAGATCAAGAGAAGATTTTGAAAAGGAACAGGCTCATGAGTACTGTTCAACTGGTGAACTCCCTAATAGTGCTACCACTCAGCGGGAAACCGGTGACGTGTTGGCAAATTCAAGGCAAAAGAGACGTTGCATGGGAACAATACAAGCGACAGTATCCGAGGTACCCCTTGGGTCATGCTTGGAGATCTGCAACCCGGATGTAAGTGTTGAGACCAGTAGTGGGGTCGAAGTTGACCCTAGAGAAGAAGCCATGATGGAGGTTAGATACAACAATGCCTCATCTCTGTTTTCGGCGGCGGAGAGGGGGGCTACTGACTTGACATGTATGGCTACCCCATGTGACCCGGGTACGATTGACAAACTTAAGGTATGTAATTCCTATGTTCAAGATAAGTTCCTCAATCTACGAGATATCGAAATCCAAAGCTCCCCAGACCTGTCGATAGCATTAATGGGGGATGGGTCTGCTAAAGGAAAGGGTGGGGGTGAGTGGGAGCAATCTGTGGAGGGGAGCAAGTTGACTGACATTTCCCCACTTGGACATCATTGTCACTTTCCACCTAATAAAGTTTTGAGTAGGGTGGATTGGAAGTCAACTTTAAAAGAGGCAGCTACAGGTGGAAGTGATGGGTTTGGGCCTACGTCTAAGAGGGGTAGAGAAGGTATGGATGTTGATTGTATTCCGAGAGAAAGAGGTTCGGATCCTGATGGCGACGGACACAGCGGCGACACGGTGAGGCAGAGTGACGCCGACGACACCGAACTTCGTAGCCACTTCTGTGAAGGACACGTCGAGGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

543

Amino Acids

60.12

Weight (kDa)

5.32

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 172 - 219 1.8e-08 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1374
AatII GACGTC 1 cut(s) 522
Acc65I GGTACC 1 cut(s) 988
AccB1I GGYRCC 2 cut(s) 793, 988
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 501
AciI CCGC 5 cut(s) 742, 910, 1121, 1124, 1551
AclWI GGATC 4 cut(s) 272, 340, 1523, 1536
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 1 cut(s) 934
AcuI CTGAAG 1 cut(s) 267
AcyI GRCGYC 2 cut(s) 519, 1575
AfaI GTAC 4 cut(s) 375, 869, 990, 1177
AfeI AGCGCT 1 cut(s) 539
AfiI CCNNNNNNNGG 4 cut(s) 202, 687, 909, 1047
AflII CTTAAG 3 cut(s) 161, 268, 1190
AflIII ACRYGT 4 cut(s) 499, 924, 1148, 1615
AgeI ACCGGT 1 cut(s) 917
AgsI TTSAA 9 cut(s) 236, 526, 641, 736, 790, 848, 876, 939, 1214
AjiI CACGTC 2 cut(s) 925, 1618
AjnI CCWGG 2 cut(s) 69, 101
AleI CACNNNNGTG 1 cut(s) 1605
AluBI AGCT 6 cut(s) 299, 473, 550, 779, 1254, 1439
AluI AGCT 6 cut(s) 299, 473, 550, 779, 1254, 1439
Alw26I GTCTC 5 cut(s) 244, 449, 820, 943, 1031
AlwI GGATC 4 cut(s) 272, 340, 1523, 1536
Ama87I CYCGRG 1 cut(s) 1171
Aor51HI AGCGCT 1 cut(s) 539
AoxI GGCC 4 cut(s) 193, 385, 442, 1463
ApeKI GCWGC 1 cut(s) 1436
ApoI RAATTY 1 cut(s) 934
AseI ATTAAT 2 cut(s) 561, 1277
AsiGI ACCGGT 1 cut(s) 917
Asp718I GGTACC 1 cut(s) 988
AspLEI GCGC 1 cut(s) 540
AspS9I GGNCC 7 cut(s) 67, 124, 278, 285, 332, 725, 1463
AsuC2I CCSGG 3 cut(s) 1022, 1172, 1173
AsuHPI GGTGA 9 cut(s) 34, 227, 479, 670, 710, 893, 932, 1325, 1573
AvaI CYCGRG 1 cut(s) 1171
AvaII GGWCC 6 cut(s) 67, 124, 278, 285, 332, 725
BalI TGGCCA 1 cut(s) 444
BamHI GGATCC 1 cut(s) 1528
BanI GGYRCC 2 cut(s) 793, 988
BbsI GAAGAC 2 cut(s) 12, 514
BbvCI CCTCAGC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 1448
BccI CCATC 6 cut(s) 690, 753, 1075, 1280, 1448, 1529
BceAI ACGGC 1 cut(s) 3
BciT130I CCWGG 2 cut(s) 71, 103
BciVI GTATCC 1 cut(s) 991
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 3 cut(s) 1022, 1172, 1173
BcoDI GTCTC 5 cut(s) 244, 449, 820, 943, 1031
BfaI CTAG 3 cut(s) 261, 828, 1065
BfmI CTRYAG 1 cut(s) 1440
BfoI RGCGCY 1 cut(s) 541
BfrI CTTAAG 3 cut(s) 161, 268, 1190
BfuI GTATCC 1 cut(s) 991
BglII AGATCT 2 cut(s) 165, 1011
BisI GCNGC 3 cut(s) 1122, 1437, 1552
BlsI GCNGC 3 cut(s) 1123, 1438, 1553
BmcAI AGTACT 1 cut(s) 869
Bme1390I CCNGG 5 cut(s) 71, 103, 1022, 1172, 1173
Bme18I GGWCC 6 cut(s) 67, 124, 278, 285, 332, 725
BmeT110I CYCGRG 1 cut(s) 1171
BmgBI CACGTC 2 cut(s) 925, 1618
BmgT120I GGNCC 7 cut(s) 67, 124, 278, 285, 332, 725, 1463
BmiI GGNNCC 6 cut(s) 279, 333, 334, 795, 990, 1530
BmrFI CCNGG 5 cut(s) 71, 103, 1022, 1172, 1173
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 2 cut(s) 12, 514
Bpu10I CCTNAGC 1 cut(s) 128
BpuMI CCSGG 3 cut(s) 1022, 1172, 1173
BsaBI GATNNNNATC 1 cut(s) 344
BsaHI GRCGYC 2 cut(s) 519, 1575
BsaI GGTCTC 1 cut(s) 1031
BsaJI CCNNGG 4 cut(s) 281, 984, 994, 1171
BsaWI WCCGGW 2 cut(s) 796, 917
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 687, 909, 1047
Bse118I RCCGGY 1 cut(s) 917
Bse1I ACTGG 2 cut(s) 883, 1041
Bse8I GATNNNNATC 1 cut(s) 344
BseBI CCWGG 2 cut(s) 71, 103
BseDI CCNNGG 4 cut(s) 281, 984, 994, 1171
BseGI GGATG 3 cut(s) 1030, 1291, 1501
BseJI GATNNNNATC 1 cut(s) 344
BseLI CCNNNNNNNGG 4 cut(s) 202, 687, 909, 1047
BseMII CTCAG 4 cut(s) 142, 399, 920, 1617
BseNI ACTGG 2 cut(s) 883, 1041
BseRI GAGGAG 2 cut(s) 232, 425
BseXI GCAGC 1 cut(s) 1448
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 4 cut(s) 195, 387, 444, 1465
BshNI GGYRCC 2 cut(s) 793, 988
BshTI ACCGGT 1 cut(s) 917
BsiHKCI CYCGRG 1 cut(s) 1171
BsiSI CCGG 4 cut(s) 797, 918, 1022, 1172
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 4 cut(s) 202, 687, 909, 1047
BsmAI GTCTC 5 cut(s) 244, 449, 820, 943, 1031
BsmBI CGTCTC 1 cut(s) 943
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 4 cut(s) 195, 387, 444, 1465
Bso31I GGTCTC 1 cut(s) 1031
BsoBI CYCGRG 1 cut(s) 1171
Bsp143I GATC 8 cut(s) 165, 264, 345, 460, 631, 830, 1011, 1528
BspACI CCGC 5 cut(s) 742, 910, 1121, 1124, 1551
BspANI GGCC 4 cut(s) 195, 387, 444, 1465
BspCNI CTCAG 4 cut(s) 141, 400, 919, 1618
BspFNI CGCG 1 cut(s) 501
BspHI TCATGA 1 cut(s) 862
BspLI GGNNCC 6 cut(s) 279, 333, 334, 795, 990, 1530
BspPI GGATC 4 cut(s) 272, 340, 1523, 1536
BspT107I GGYRCC 2 cut(s) 793, 988
BspTI CTTAAG 3 cut(s) 161, 268, 1190
BspTNI GGTCTC 1 cut(s) 1031
BsrFI RCCGGY 1 cut(s) 917
BsrI ACTGG 2 cut(s) 883, 1041
BssAI RCCGGY 1 cut(s) 917
BssECI CCNNGG 4 cut(s) 281, 984, 994, 1171
BssMI GATC 8 cut(s) 165, 264, 345, 460, 631, 830, 1011, 1528
BssNI GRCGYC 2 cut(s) 519, 1575
BssT1I CCWWGG 2 cut(s) 281, 994
Bst2UI CCWGG 2 cut(s) 71, 103
Bst4CI ACNGT 3 cut(s) 872, 979, 1561
BstACI GRCGYC 2 cut(s) 519, 1575
BstAFI CTTAAG 3 cut(s) 161, 268, 1190
BstDEI CTNAG 7 cut(s) 10, 128, 408, 707, 906, 1473, 1626
BstF5I GGATG 3 cut(s) 1030, 1291, 1501
BstFNI CGCG 1 cut(s) 501
BstH2I RGCGCY 1 cut(s) 541
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 8 cut(s) 168, 267, 348, 463, 634, 833, 1014, 1531
BstMAI GTCTC 5 cut(s) 244, 449, 820, 943, 1031
BstMBI GATC 8 cut(s) 165, 264, 345, 460, 631, 830, 1011, 1528
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNI CCWGG 2 cut(s) 71, 103
BstNSI RCATGY 1 cut(s) 1152
BstSCI CCNGG 5 cut(s) 69, 101, 1020, 1170, 1171
BstSFI CTRYAG 1 cut(s) 1440
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 1 cut(s) 1448
BstV2I GAAGAC 2 cut(s) 12, 514
BstX2I RGATCY 4 cut(s) 165, 264, 1011, 1528
BstYI RGATCY 4 cut(s) 165, 264, 1011, 1528
BsuI GTATCC 1 cut(s) 991
BsuRI GGCC 4 cut(s) 195, 387, 444, 1465
BtrI CACGTC 2 cut(s) 925, 1618
BtsCI GGATG 3 cut(s) 1030, 1291, 1501
CciI TCATGA 1 cut(s) 862
CfoI GCGC 1 cut(s) 540
Cfr10I RCCGGY 1 cut(s) 917
Cfr13I GGNCC 7 cut(s) 67, 124, 278, 285, 332, 725, 1463
Cfr9I CCCGGG 1 cut(s) 1171
CseI GACGC 2 cut(s) 490, 1583
Csp6I GTAC 4 cut(s) 374, 868, 989, 1176
CspAI ACCGGT 1 cut(s) 917
CviAII CATG 9 cut(s) 200, 383, 719, 863, 958, 1002, 1078, 1149, 1164
CviQI GTAC 4 cut(s) 374, 868, 989, 1176
DdeI CTNAG 7 cut(s) 10, 128, 408, 707, 906, 1473, 1626
DpnI GATC 8 cut(s) 167, 266, 347, 462, 633, 832, 1013, 1530
DpnII GATC 8 cut(s) 165, 264, 345, 460, 631, 830, 1011, 1528
DraI TTTAAA 1 cut(s) 1428
DrdI GACNNNNNNGTC 1 cut(s) 1374
DseDI GACNNNNNNGTC 1 cut(s) 1374
EaeI YGGCCR 1 cut(s) 442
EciI GGCGGA 1 cut(s) 1139
Eco130I CCWWGG 2 cut(s) 281, 994
Eco31I GGTCTC 1 cut(s) 1031
Eco32I GATATC 1 cut(s) 1240
Eco47I GGWCC 6 cut(s) 67, 124, 278, 285, 332, 725
Eco47III AGCGCT 1 cut(s) 539
Eco57I CTGAAG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 1171
EcoO109I RGGNCCY 3 cut(s) 278, 332, 725
EcoRII CCWGG 2 cut(s) 69, 101
EcoRV GATATC 1 cut(s) 1240
EcoT14I CCWWGG 2 cut(s) 281, 994
ErhI CCWWGG 2 cut(s) 281, 994
Esp3I CGTCTC 1 cut(s) 943
FaeI CATG 9 cut(s) 203, 386, 722, 866, 961, 1005, 1081, 1152, 1167
FaqI GGGAC 1 cut(s) 318
FatI CATG 9 cut(s) 199, 382, 718, 862, 957, 1001, 1077, 1148, 1163
FauI CCCGC 1 cut(s) 903
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 1122, 1437, 1552
FokI GGATG 3 cut(s) 1037, 1298, 1508
Fsp4HI GCNGC 3 cut(s) 1122, 1437, 1552
FspBI CTAG 3 cut(s) 261, 828, 1065
GlaI GCGC 1 cut(s) 539
GluI GCNGC 3 cut(s) 1122, 1437, 1552
HaeII RGCGCY 1 cut(s) 541
HaeIII GGCC 4 cut(s) 195, 387, 444, 1465
HapII CCGG 4 cut(s) 797, 918, 1022, 1172
HgaI GACGC 2 cut(s) 490, 1583
HhaI GCGC 1 cut(s) 540
Hin1I GRCGYC 2 cut(s) 519, 1575
Hin1II CATG 9 cut(s) 203, 386, 722, 866, 961, 1005, 1081, 1152, 1167
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HincII GTYRAC 5 cut(s) 28, 422, 1060, 1347, 1422
HindII GTYRAC 5 cut(s) 28, 422, 1060, 1347, 1422
HinfI GANTC 2 cut(s) 74, 809
HpaI GTTAAC 1 cut(s) 28
HpaII CCGG 4 cut(s) 797, 918, 1022, 1172
HphI GGTGA 9 cut(s) 34, 227, 479, 670, 710, 893, 932, 1325, 1573
Hpy166II GTNNAC 7 cut(s) 28, 158, 422, 884, 1060, 1347, 1422
Hpy188I TCNGA 7 cut(s) 79, 247, 490, 506, 985, 1512, 1528
Hpy188III TCNNGA 6 cut(s) 172, 181, 834, 863, 1214, 1532
Hpy8I GTNNAC 7 cut(s) 28, 158, 422, 884, 1060, 1347, 1422
Hpy99I CGWCG 3 cut(s) 1544, 1583, 1622
HpyAV CCTTC 8 cut(s) 206, 212, 321, 635, 716, 784, 1481, 1604
HpyCH4III ACNGT 3 cut(s) 872, 979, 1561
HpyCH4IV ACGT 7 cut(s) 519, 636, 754, 924, 952, 1469, 1617
HpyCH4V TGCA 5 cut(s) 147, 428, 651, 957, 1017
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 7 cut(s) 10, 128, 408, 707, 906, 1473, 1626
HpySE526I ACGT 7 cut(s) 519, 636, 754, 924, 952, 1469, 1617
Hsp92I GRCGYC 2 cut(s) 519, 1575
Hsp92II CATG 9 cut(s) 203, 386, 722, 866, 961, 1005, 1081, 1152, 1167
HspAI GCGC 1 cut(s) 538
KflI GGGWCCC 1 cut(s) 332
KpnI GGTACC 1 cut(s) 992
Ksp22I TGATCA 1 cut(s) 631
KspAI GTTAAC 1 cut(s) 28
Kzo9I GATC 8 cut(s) 165, 264, 345, 460, 631, 830, 1011, 1528
LmnI GCTCC 3 cut(s) 1259, 1321, 1338
Lsp1109I GCAGC 1 cut(s) 1448
LweI GCATC 1 cut(s) 307
MaeI CTAG 3 cut(s) 261, 828, 1065
MaeII ACGT 7 cut(s) 519, 636, 754, 924, 952, 1469, 1617
MaeIII GTNAC 4 cut(s) 920, 1166, 1376, 1571
MalI GATC 8 cut(s) 167, 266, 347, 462, 633, 832, 1013, 1530
MboI GATC 8 cut(s) 165, 264, 345, 460, 631, 830, 1011, 1528
MboII GAAGA 6 cut(s) 17, 160, 410, 514, 851, 1082
MflI RGATCY 4 cut(s) 165, 264, 1011, 1528
MlsI TGGCCA 1 cut(s) 444
MluCI AATT 4 cut(s) 582, 692, 934, 1201
MluI ACGCGT 1 cut(s) 499
MluNI TGGCCA 1 cut(s) 444
Mox20I TGGCCA 1 cut(s) 444
MscI TGGCCA 1 cut(s) 444
MseI TTAA 9 cut(s) 27, 162, 269, 353, 534, 561, 1191, 1277, 1427
MslI CAYNNNNRTG 2 cut(s) 204, 1605
Msp20I TGGCCA 1 cut(s) 444
MspA1I CMGCKG 2 cut(s) 910, 1551
MspCI CTTAAG 3 cut(s) 161, 268, 1190
MspI CCGG 4 cut(s) 797, 918, 1022, 1172
MspR9I CCNGG 5 cut(s) 71, 103, 1022, 1172, 1173
MvaI CCWGG 2 cut(s) 71, 103
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 1 cut(s) 535
NciI CCSGG 3 cut(s) 1022, 1172, 1173
NdeII GATC 8 cut(s) 165, 264, 345, 460, 631, 830, 1011, 1528
NlaIII CATG 9 cut(s) 203, 386, 722, 866, 961, 1005, 1081, 1152, 1167
NlaIV GGNNCC 6 cut(s) 279, 333, 334, 795, 990, 1530
NmuCI GTSAC 4 cut(s) 920, 1166, 1376, 1571
NspI RCATGY 1 cut(s) 1152
OliI CACNNNNGTG 1 cut(s) 1605
PagI TCATGA 1 cut(s) 862
PciI ACATGT 1 cut(s) 1148
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 2 cut(s) 74, 809
PfoI TCCNGGA 1 cut(s) 69
PinAI ACCGGT 1 cut(s) 917
PkrI GCNGC 3 cut(s) 1123, 1438, 1553
PpuMI RGGWCCY 3 cut(s) 278, 332, 725
PscI ACATGT 1 cut(s) 1148
PshBI ATTAAT 2 cut(s) 561, 1277
Psp5II RGGWCCY 3 cut(s) 278, 332, 725
Psp6I CCWGG 2 cut(s) 69, 101
PspGI CCWGG 2 cut(s) 69, 101
PspN4I GGNNCC 6 cut(s) 279, 333, 334, 795, 990, 1530
PspPI GGNCC 7 cut(s) 67, 124, 278, 285, 332, 725, 1463
PspPPI RGGWCCY 3 cut(s) 278, 332, 725
PsuI RGATCY 4 cut(s) 165, 264, 1011, 1528
RsaI GTAC 4 cut(s) 375, 869, 990, 1177
RsaNI GTAC 4 cut(s) 374, 868, 989, 1176
RseI CAYNNNNRTG 2 cut(s) 204, 1605
SaqAI TTAA 9 cut(s) 27, 162, 269, 353, 534, 561, 1191, 1277, 1427
SatI GCNGC 3 cut(s) 1122, 1437, 1552
Sau3AI GATC 8 cut(s) 165, 264, 345, 460, 631, 830, 1011, 1528
Sau96I GGNCC 7 cut(s) 67, 124, 278, 285, 332, 725, 1463
ScaI AGTACT 1 cut(s) 869
ScrFI CCNGG 5 cut(s) 71, 103, 1022, 1172, 1173
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 1440
SinI GGWCC 6 cut(s) 67, 124, 278, 285, 332, 725
SmaI CCCGGG 1 cut(s) 1173
SmiMI CAYNNNNRTG 2 cut(s) 204, 1605
SmlI CTYRAG 3 cut(s) 161, 268, 1190
SmoI CTYRAG 3 cut(s) 161, 268, 1190
Sse9I AATT 4 cut(s) 582, 692, 934, 1201
SsiI CCGC 5 cut(s) 742, 910, 1121, 1124, 1551
SspMI CTAG 3 cut(s) 261, 828, 1065
StyD4I CCNGG 5 cut(s) 69, 101, 1020, 1170, 1171
StyI CCWWGG 2 cut(s) 281, 994
TaaI ACNGT 3 cut(s) 872, 979, 1561
TaiI ACGT 7 cut(s) 522, 639, 757, 927, 955, 1472, 1620
TaqI TCGA 7 cut(s) 344, 390, 569, 1053, 1242, 1268, 1620
TasI AATT 4 cut(s) 582, 692, 934, 1201
TatI WGTACW 1 cut(s) 867
TauI GCSGC 2 cut(s) 1124, 1554
TfiI GAWTC 2 cut(s) 74, 809
Tru1I TTAA 9 cut(s) 27, 162, 269, 353, 534, 561, 1191, 1277, 1427
Tru9I TTAA 9 cut(s) 27, 162, 269, 353, 534, 561, 1191, 1277, 1427
TseFI GTSAC 4 cut(s) 920, 1166, 1376, 1571
TseI GCWGC 1 cut(s) 1436
Tsp45I GTSAC 4 cut(s) 920, 1166, 1376, 1571
TspDTI ATGAA 7 cut(s) 188, 371, 594, 604, 606, 735, 785
TspGWI ACGGA 1 cut(s) 1557
TspMI CCCGGG 1 cut(s) 1171
Vha464I CTTAAG 3 cut(s) 161, 268, 1190
VpaK11BI GGWCC 6 cut(s) 67, 124, 278, 285, 332, 725
VspI ATTAAT 2 cut(s) 561, 1277
XapI RAATTY 1 cut(s) 934
XceI RCATGY 1 cut(s) 1152
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XmaI CCCGGG 1 cut(s) 1171
XmiI GTMKAC 1 cut(s) 157
XspI CTAG 3 cut(s) 261, 828, 1065
ZraI GACGTC 1 cut(s) 520
ZrmI AGTACT 1 cut(s) 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.