Rorug04G0026700

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
3679521 .. 3682676
3156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0026700.1

Sequence Viewer

Length: 2523 bp
ATGCTTGCCAAGCTCCAGCTGGACTTCCCCGTTTTGGGTTCCACAAGGACCTCACCCAACACAGGACTCCCTCCACTGGAGAAACTCGAACTCATAACCAGAGATAGGAAGCAGAGAGTGCTTCACGGAGGAGGGTTCAAGAAGGGTTTTGGTGAAGTTTGTAGACCCAGACACAGTAATGGTGGCAGTGTTGTTGTTCATGAAGTTGGGTTGAAGAAGCGTGGTTTTGTGAAGAACCCAGATGAGGAAAAGGGATTAGAGAATCTGGGTGATGGTGGGTTTGTGGAAAGAAAGGATTTTGGGGTTGAATTGGGGTTGGGGGGTGGGAATGGTGTGGTGAAGAAAGTGCAGACCAAGTGTTCGACGAAATGGCTGAGTTACGGCGGGTGCATTCCGGCAATGTTGACGGCGTTGGAGGAAGTTGAGGACTTGGATGAGGCTCTGAAGCCGTGGGGTGAGACGCTTAGTAACAAGGAAAGGAGCATAATTTTGAAGGAGCAGAGGAGTTGGGGAAGAGCTTTGGAGATTTTCGAGTGGTTTAAGATGAAGAGGTGTTATGAGTTGCATGTGATTCACTATAATATAGTGCTTAGGATTCTTGGGAAGGCGAAGAAGTGGAGTCATCTAAGGAGTCTTTGGGATGAGATGAATGTGGAAAGAATAGCACCCATTAACTCAACTTATGGAACTTTGATTGATGTTTATAGTAAAGGTGGGTTCGAAAAGGAAGCGCTTATTTGGCTGCAGAGGATGACCAAGCAAGGAATGAAACCTGATGAGGTTACTATGGCCATTGTGCTGCAGTTGTACAAGAAAGCAGGGGAGTACCGAAAGGCTGAGGAGTTTTTCGAGAAATGGTCGGAGAGCTCGTTGCATTGTCATGGTTCTTTGAGCTCGCATACGTATAACACATTGATCGACACGCGTGGAAAGGCTGGCCAGCTTAAAGAAGCGTCGGAAATATTTGCATCGATGCTGAGGGAAGGGATTGCTCCAACTACGGTGACTTTTAATACAATGATTCACATTTGCGGTAATCATGGTCAGCTTGCTGAAGTTGCTTCGCTTATGCAGAAGATGGAAGAGGTTCGATGCCCACCAGACACGAGAACATATAATATTCTGATTTCCCTCCATGCTAGGCATGATAATATAGACACAGCTACAAACTACTTTGCAAAGATGAAGGAGGCTTGCCTCGAGCCTGACCTTGTGAGTTATCGCACCCTTTTGTATGCATACTCTGTAAGGCACATGGTTAGCAAAGCTGAAGAGCTCATATCAGAGATGGATGAAAGGGGACTTGAGATTGATGAGTTCACTCATTCGGCTCTGACTAGGATGTACATAGAAGCGGGGATGCTTGAGAAGTCTTGGGTTTGGTTCATGAGATTTCATCTCTCAGGGAAAATGGGATCTGATTGCTATTCTGCCAACATTGATGCATATGGAGAGCGTGGGCATATTTTGGAAGCTGAGAAAGTTTTCAATTGCTGCCGAGAAGTGAAGAAGTTGAGTGTCCTTGAGTTCAATGTGATGATCAAAGCATATGGGGTTGGTAAACATTACAGTAGAGCTTGCCAGTTGTTTGATAGCATGGAAAGTAATGGTGTAATTCCGGACAGGTGTAGCTATAGTTCTCTGATACAAATTTTGGCTAGTGGTGATATGCCACATACTGCAATGCCTTATCTGAAGAAGATGCAGGAGTCAGGGTTGATACGTGATTGCATCCCCTATTGTGCTGTGATATCAAGCTTTGCAAAATTAGGTCAATTGGAAAGTGCAGAGGACGTTTATAAACAGATGGTTGGATTCAATGTGCAGCCTGATGTAATTGTCTTTGGGGTGTTGATAAATGCTTTTGCTGAAGTTGGAAGCGTTAAAAAAGCTCTCGGTTATGCTGATGCAATGAAAAGGGCAGGTTTCCCTGGGAACACAGTTGTTTACAATACCTTGATCAAGCTCTATACAAAAGTTGGCCTTTTGAAAGAAGCAGAAGAAACATACAAACTTCTTCAGTCATCAGAGGATGGTCCTGCTATATATGCCTCAAATTGTATGATTGATCTTTATAGCGAGCGATGTATGGTTAAACCAGCAGAAGAACTCTTTGACAGCTTGAAGAGAAAGGGGGATGCAAATGAGTTTACATTTGCAATGATGTTGTGCATGTATAAGAGAATTGGGAGGTTTGAGGAAGCCCTTCAGATTGCAAAGCAGATGAGAGAGCTGCGACTTTTAACTGATCTGCTGAGTTATAATAATGTTATTGGGTTGTATGCGACATATGGAAGATTCAAAGAGGTGGTGGAAACTTTCAAGGAAATGACAAAAGCTGCCATTCAACCTGATGAAGGCACATTCAAATCACTGGGACTTGTTTTGGTGAAATCTGGACTTTCAAAGCAGGCTGTGGGAAAACTGGAAGTATCAGTTAAGAGGGATACTCGGAGTGGTTTGCAAGCTTGGATGTCAGCCCTCTCTGCTGTTGTCAGAGTGAATGAAAGTAGTTACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

840

Amino Acids

94.68

Weight (kDa)

8.22

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 296 - 394 2.7e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 299 - 342 2e-11 PPR repeat family
PPR_3 PF13812 300 - 346 2.1e-09 Pentatricopeptide repeat domain
PPR_long PF17177 304 - 459 1.5e-13 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 332 - 378 4.9e-12 PPR repeat family
PPR_2 PF13041 367 - 414 1.6e-08 PPR repeat family
PPR_2 PF13041 402 - 447 4.7e-07 PPR repeat family
TPR_24 PF23276 502 - 603 2.5e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 504 - 551 5.6e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 510 - 553 6.9e-08 PPR repeat family
PPR_long PF17177 522 - 675 2.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 580 - 623 1.3e-06 PPR repeat family
PPR_2 PF13041 751 - 792 4.1e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1800, 2262
Acc36I ACCTGC 1 cut(s) 1913
AccI GTMKAC 1 cut(s) 163
AccII CGCG 1 cut(s) 925
AccIII TCCGGA 1 cut(s) 1618
AciI CCGC 3 cut(s) 384, 1032, 1355
AclWI GGATC 1 cut(s) 1423
AcoI YGGCCR 2 cut(s) 789, 937
AcsI RAATTY 1 cut(s) 1650
AcuI CTGAAG 7 cut(s) 464, 1074, 1290, 1715, 1890, 2003, 2192
AfaI GTAC 3 cut(s) 809, 827, 1346
AfeI AGCGCT 1 cut(s) 732
AfiI CCNNNNNNNGG 7 cut(s) 34, 35, 62, 76, 105, 244, 2357
AflIII ACRYGT 2 cut(s) 923, 2517
AjnI CCWGG 1 cut(s) 1930
Alw21I GWGCWC 3 cut(s) 869, 896, 1278
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 1 cut(s) 1423
Ama87I CYCGRG 1 cut(s) 1199
Aor13HI TCCGGA 1 cut(s) 1618
Aor51HI AGCGCT 1 cut(s) 732
AoxI GGCC 3 cut(s) 789, 937, 1981
ApeKI GCWGC 6 cut(s) 742, 799, 1494, 1825, 2233, 2339
ApoI RAATTY 1 cut(s) 1650
ArsI GACNNNNNNTTYG 2 cut(s) 343, 375
Asp700I GAANNNNTTC 3 cut(s) 1086, 1484, 2205
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 2 cut(s) 48, 2036
AsuHPI GGTGA 8 cut(s) 45, 164, 281, 349, 467, 1015, 1676, 2401
AsuII TTCGAA 1 cut(s) 720
AvaI CYCGRG 1 cut(s) 1199
AvaII GGWCC 2 cut(s) 48, 2036
BalI TGGCCA 2 cut(s) 791, 939
BanII GRGCYC 3 cut(s) 869, 896, 1278
BauI CACGAG 1 cut(s) 1105
Bbv12I GWGCWC 3 cut(s) 869, 896, 1278
BbvCI CCTCAGC 2 cut(s) 837, 977
BbvI GCAGC 6 cut(s) 729, 786, 1481, 1837, 2220, 2326
BccI CCATC 5 cut(s) 266, 1072, 1282, 1801, 2027
BceAI ACGGC 3 cut(s) 397, 423, 433
BciT130I CCWGG 1 cut(s) 1932
BciVI GTATCC 1 cut(s) 2440
BclI TGATCA 2 cut(s) 1539, 1959
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 3 cut(s) 1140, 1338, 1659
BfmI CTRYAG 3 cut(s) 743, 800, 1633
BfoI RGCGCY 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 1913
BfuI GTATCC 1 cut(s) 2440
BisI GCNGC 6 cut(s) 743, 800, 1495, 1826, 2234, 2340
BlsI GCNGC 6 cut(s) 744, 801, 1496, 1827, 2235, 2341
Bme1390I CCNGG 1 cut(s) 1932
Bme18I GGWCC 2 cut(s) 48, 2036
BmeT110I CYCGRG 1 cut(s) 1199
BmgT120I GGNCC 2 cut(s) 48, 2036
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 1932
BmrI ACTGGG 1 cut(s) 2384
BmsI GCATC 9 cut(s) 963, 977, 1082, 1350, 1432, 1692, 1740, 1897, 2128
BmuI ACTGGG 1 cut(s) 2384
BplI GAGNNNNNCTC 2 cut(s) 2434, 2466
BpmI CTGGAG 1 cut(s) 98
Bpu10I CCTNAGC 3 cut(s) 590, 837, 977
Bpu14I TTCGAA 1 cut(s) 720
BpuEI CTTGAG 3 cut(s) 1325, 1385, 1544
Bsa29I ATCGAT 1 cut(s) 971
BsaAI YACGTR 2 cut(s) 903, 1724
BsaJI CCNNGG 3 cut(s) 449, 1930, 1931
BsaWI WCCGGW 1 cut(s) 1618
BsaXI ACNNNNNCTCC 4 cut(s) 854, 884, 1700, 1730
Bsc4I CCNNNNNNNGG 7 cut(s) 34, 35, 62, 76, 105, 244, 2357
Bse1I ACTGG 4 cut(s) 81, 1582, 2379, 2430
Bse3DI GCAATG 4 cut(s) 405, 1689, 1917, 2166
BseAI TCCGGA 1 cut(s) 1618
BseBI CCWGG 1 cut(s) 1932
BseCI ATCGAT 1 cut(s) 971
BseDI CCNNGG 3 cut(s) 449, 1930, 1931
BseLI CCNNNNNNNGG 7 cut(s) 34, 35, 62, 76, 105, 244, 2357
BseMI GCAATG 4 cut(s) 405, 1689, 1917, 2166
BseMII CTCAG 6 cut(s) 365, 828, 968, 1416, 1467, 2246
BseNI ACTGG 4 cut(s) 81, 1582, 2379, 2430
BseRI GAGGAG 3 cut(s) 144, 517, 854
BseXI GCAGC 6 cut(s) 729, 786, 1481, 1837, 2220, 2326
BsgI GTGCAG 3 cut(s) 368, 1806, 1844
Bsh1236I CGCG 1 cut(s) 925
BshFI GGCC 3 cut(s) 791, 939, 1983
BshVI ATCGAT 1 cut(s) 971
BsiHKAI GWGCWC 3 cut(s) 869, 896, 1278
BsiHKCI CYCGRG 1 cut(s) 1199
BsiSI CCGG 2 cut(s) 395, 1619
BslFI GGGAC 2 cut(s) 1314, 2391
BslI CCNNNNNNNGG 7 cut(s) 34, 35, 62, 76, 105, 244, 2357
BsmAI GTCTC 1 cut(s) 452
BsmBI CGTCTC 1 cut(s) 452
BsmFI GGGAC 2 cut(s) 1314, 2391
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 3 cut(s) 791, 939, 1983
BsoBI CYCGRG 1 cut(s) 1199
Bsp119I TTCGAA 1 cut(s) 720
Bsp1286I GDGCHC 3 cut(s) 869, 896, 1278
Bsp13I TCCGGA 1 cut(s) 1618
Bsp1407I TGTACA 2 cut(s) 807, 1344
Bsp143I GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
BspACI CCGC 3 cut(s) 384, 1032, 1355
BspANI GGCC 3 cut(s) 791, 939, 1983
BspCNI CTCAG 6 cut(s) 366, 829, 969, 1415, 1468, 2247
BspDI ATCGAT 1 cut(s) 971
BspEI TCCGGA 1 cut(s) 1618
BspFNI CGCG 1 cut(s) 925
BspHI TCATGA 2 cut(s) 199, 1386
BspLI GGNNCC 1 cut(s) 40
BspMAI CTGCAG 2 cut(s) 747, 804
BspMI ACCTGC 1 cut(s) 1913
BspPI GGATC 1 cut(s) 1423
BspQI GCTCTTC 2 cut(s) 508, 1266
BspT104I TTCGAA 1 cut(s) 720
BsrDI GCAATG 4 cut(s) 405, 1689, 1917, 2166
BsrGI TGTACA 2 cut(s) 807, 1344
BsrI ACTGG 4 cut(s) 81, 1582, 2379, 2430
BssECI CCNNGG 3 cut(s) 449, 1930, 1931
BssMI GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
BssSI CACGAG 1 cut(s) 1105
Bst2BI CACGAG 1 cut(s) 1105
Bst2UI CCWGG 1 cut(s) 1932
Bst4CI ACNGT 4 cut(s) 176, 1003, 1571, 1942
Bst6I CTCTTC 5 cut(s) 508, 542, 1077, 1266, 2120
BstAPI GCANNNNNTGC 1 cut(s) 118
BstAUI TGTACA 2 cut(s) 807, 1344
BstBAI YACGTR 2 cut(s) 903, 1724
BstBI TTCGAA 1 cut(s) 720
BstDEI CTNAG 9 cut(s) 374, 464, 590, 626, 837, 977, 1402, 1476, 2255
BstDSI CCRYGG 1 cut(s) 449
BstENI CCTNNNNNAGG 1 cut(s) 2355
BstFNI CGCG 1 cut(s) 925
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 6 cut(s) 918, 1418, 1542, 1962, 2071, 2251
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
BstMWI GCNNNNNNNGC 6 cut(s) 10, 118, 739, 1058, 2048, 2486
BstNI CCWGG 1 cut(s) 1932
BstNSI RCATGY 3 cut(s) 569, 2176, 2521
BstSCI CCNGG 1 cut(s) 1930
BstSFI CTRYAG 3 cut(s) 743, 800, 1633
BstSNI TACGTA 1 cut(s) 903
BstUI CGCG 1 cut(s) 925
BstV1I GCAGC 6 cut(s) 729, 786, 1481, 1837, 2220, 2326
BstX2I RGATCY 1 cut(s) 1415
BstYI RGATCY 1 cut(s) 1415
Bsu15I ATCGAT 1 cut(s) 971
BsuI GTATCC 1 cut(s) 2440
BsuRI GGCC 3 cut(s) 791, 939, 1983
BsuTUI ATCGAT 1 cut(s) 971
BtgI CCRYGG 1 cut(s) 449
BtgZI GCGATG 1 cut(s) 2098
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 3 cut(s) 74, 193, 2372
BveI ACCTGC 1 cut(s) 1913
CciI TCATGA 2 cut(s) 199, 1386
CfoI GCGC 1 cut(s) 733
Cfr13I GGNCC 2 cut(s) 48, 2036
ClaI ATCGAT 1 cut(s) 971
CseI GACGC 2 cut(s) 469, 942
Csp6I GTAC 3 cut(s) 808, 826, 1345
CviQI GTAC 3 cut(s) 808, 826, 1345
DdeI CTNAG 9 cut(s) 374, 464, 590, 626, 837, 977, 1402, 1476, 2255
DpnI GATC 6 cut(s) 917, 1417, 1541, 1961, 2070, 2250
DpnII GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
EaeI YGGCCR 2 cut(s) 789, 937
Eam1104I CTCTTC 5 cut(s) 508, 542, 1077, 1266, 2120
EarI CTCTTC 5 cut(s) 508, 542, 1077, 1266, 2120
Ecl136II GAGCTC 3 cut(s) 867, 894, 1276
Eco105I TACGTA 1 cut(s) 903
Eco24I GRGCYC 3 cut(s) 869, 896, 1278
Eco32I GATATC 1 cut(s) 1752
Eco47I GGWCC 2 cut(s) 48, 2036
Eco47III AGCGCT 1 cut(s) 732
Eco53kI GAGCTC 3 cut(s) 867, 894, 1276
Eco57I CTGAAG 7 cut(s) 464, 1074, 1290, 1715, 1890, 2003, 2192
Eco88I CYCGRG 1 cut(s) 1199
EcoICRI GAGCTC 3 cut(s) 867, 894, 1276
EcoNI CCTNNNNNAGG 1 cut(s) 2355
EcoO109I RGGNCCY 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 1930
EcoRV GATATC 1 cut(s) 1752
EcoT22I ATGCAT 2 cut(s) 1240, 1447
EcoT38I GRGCYC 3 cut(s) 869, 896, 1278
Esp3I CGTCTC 1 cut(s) 452
FalI AAGNNNNNCTT 2 cut(s) 1968, 2000
FaqI GGGAC 2 cut(s) 1314, 2391
FauI CCCGC 2 cut(s) 377, 1348
FauNDI CATATG 3 cut(s) 1447, 1549, 2290
FbaI TGATCA 2 cut(s) 1539, 1959
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 6 cut(s) 743, 800, 1495, 1826, 2234, 2340
FriOI GRGCYC 3 cut(s) 869, 896, 1278
Fsp4HI GCNGC 6 cut(s) 743, 800, 1495, 1826, 2234, 2340
FspBI CTAG 3 cut(s) 1140, 1338, 1659
GlaI GCGC 1 cut(s) 732
GluI GCNGC 6 cut(s) 743, 800, 1495, 1826, 2234, 2340
GsuI CTGGAG 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 3 cut(s) 791, 939, 1983
HapII CCGG 2 cut(s) 395, 1619
HgaI GACGC 2 cut(s) 469, 942
HhaI GCGC 1 cut(s) 733
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HindIII AAGCTT 2 cut(s) 1756, 2466
HpaII CCGG 2 cut(s) 395, 1619
HphI GGTGA 8 cut(s) 45, 164, 281, 349, 467, 1015, 1676, 2401
Hpy166II GTNNAC 6 cut(s) 164, 405, 1320, 1562, 1948, 2151
Hpy188III TCNNGA 6 cut(s) 139, 200, 850, 1387, 1619, 2397
Hpy8I GTNNAC 6 cut(s) 164, 405, 1320, 1562, 1948, 2151
Hpy99I CGWCG 2 cut(s) 367, 958
HpyAV CCTTC 7 cut(s) 136, 487, 598, 977, 1180, 2216, 2351
HpyCH4III ACNGT 4 cut(s) 176, 1003, 1571, 1942
HpyCH4IV ACGT 3 cut(s) 902, 1723, 1794
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 118, 739, 1058, 2048, 2486
HpyF3I CTNAG 9 cut(s) 374, 464, 590, 626, 837, 977, 1402, 1476, 2255
HpySE526I ACGT 3 cut(s) 902, 1723, 1794
HspAI GCGC 1 cut(s) 731
Kpn2I TCCGGA 1 cut(s) 1618
Ksp22I TGATCA 2 cut(s) 1539, 1959
Kzo9I GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
LguI GCTCTTC 2 cut(s) 508, 1266
LmnI GCTCC 4 cut(s) 18, 480, 496, 997
Lsp1109I GCAGC 6 cut(s) 729, 786, 1481, 1837, 2220, 2326
LweI GCATC 9 cut(s) 963, 977, 1082, 1350, 1432, 1692, 1740, 1897, 2128
MaeI CTAG 3 cut(s) 1140, 1338, 1659
MaeII ACGT 3 cut(s) 902, 1723, 1794
MaeIII GTNAC 5 cut(s) 377, 467, 781, 1003, 2513
MalI GATC 6 cut(s) 917, 1417, 1541, 1961, 2070, 2250
MboI GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
MfeI CAATTG 2 cut(s) 1489, 1775
MflI RGATCY 1 cut(s) 1415
MhlI GDGCHC 3 cut(s) 869, 896, 1278
MlsI TGGCCA 2 cut(s) 791, 939
MluI ACGCGT 1 cut(s) 923
MluNI TGGCCA 2 cut(s) 791, 939
MlyI GAGTC 4 cut(s) 60, 628, 640, 1718
MmeI TCCRAC 6 cut(s) 393, 840, 936, 1019, 1792, 1855
Mox20I TGGCCA 2 cut(s) 791, 939
Mph1103I ATGCAT 2 cut(s) 1240, 1447
MroI TCCGGA 1 cut(s) 1618
MroXI GAANNNNTTC 3 cut(s) 1086, 1484, 2205
MscI TGGCCA 2 cut(s) 791, 939
MseI TTAA 8 cut(s) 540, 672, 945, 1011, 1884, 2094, 2243, 2439
MslI CAYNNNNRTG 2 cut(s) 177, 879
Msp20I TGGCCA 2 cut(s) 791, 939
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 2 cut(s) 395, 1619
MspR9I CCNGG 1 cut(s) 1932
MunI CAATTG 2 cut(s) 1489, 1775
Mva1269I GAATGC 1 cut(s) 390
MvaI CCWGG 1 cut(s) 1932
MvnI CGCG 1 cut(s) 925
MwoI GCNNNNNNNGC 6 cut(s) 10, 118, 739, 1058, 2048, 2486
NdeI CATATG 3 cut(s) 1447, 1549, 2290
NdeII GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
NlaIV GGNNCC 1 cut(s) 40
NmeAIII GCCGAG 1 cut(s) 1523
NmuCI GTSAC 1 cut(s) 1003
NsiI ATGCAT 2 cut(s) 1240, 1447
NspI RCATGY 3 cut(s) 569, 2176, 2521
NspV TTCGAA 1 cut(s) 720
PaeR7I CTCGAG 1 cut(s) 1199
PagI TCATGA 2 cut(s) 199, 1386
PasI CCCWGGG 1 cut(s) 1931
PciI ACATGT 1 cut(s) 2517
PciSI GCTCTTC 2 cut(s) 508, 1266
PcsI WCGNNNNNNNCGW 1 cut(s) 866
PctI GAATGC 1 cut(s) 390
PdmI GAANNNNTTC 3 cut(s) 1086, 1484, 2205
PfeI GAWTC 6 cut(s) 262, 571, 595, 1021, 1815, 2298
PkrI GCNGC 6 cut(s) 744, 801, 1496, 1827, 2235, 2341
PleI GAGTC 4 cut(s) 60, 627, 639, 1717
PpsI GAGTC 4 cut(s) 60, 627, 639, 1717
Ppu21I YACGTR 2 cut(s) 903, 1724
PpuMI RGGWCCY 1 cut(s) 48
PscI ACATGT 1 cut(s) 2517
PsiI TTATAA 2 cut(s) 1800, 2262
Psp124BI GAGCTC 3 cut(s) 869, 896, 1278
Psp5II RGGWCCY 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 1930
PspGI CCWGG 1 cut(s) 1930
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 48, 2036
PspPPI RGGWCCY 1 cut(s) 48
PspXI VCTCGAGB 1 cut(s) 1199
PsrI GAACNNNNNNTAC 2 cut(s) 1621, 1653
PstI CTGCAG 2 cut(s) 747, 804
PsuI RGATCY 1 cut(s) 1415
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 3 cut(s) 809, 827, 1346
RsaNI GTAC 3 cut(s) 808, 826, 1345
RseI CAYNNNNRTG 2 cut(s) 177, 879
SacI GAGCTC 3 cut(s) 869, 896, 1278
SapI GCTCTTC 2 cut(s) 508, 1266
SaqAI TTAA 8 cut(s) 540, 672, 945, 1011, 1884, 2094, 2243, 2439
SatI GCNGC 6 cut(s) 743, 800, 1495, 1826, 2234, 2340
Sau3AI GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
Sau96I GGNCC 2 cut(s) 48, 2036
SchI GAGTC 4 cut(s) 60, 628, 640, 1718
ScrFI CCNGG 1 cut(s) 1932
SduI GDGCHC 3 cut(s) 869, 896, 1278
SfaNI GCATC 9 cut(s) 963, 977, 1082, 1350, 1432, 1692, 1740, 1897, 2128
SfcI CTRYAG 3 cut(s) 743, 800, 1633
Sfr274I CTCGAG 1 cut(s) 1199
SfuI TTCGAA 1 cut(s) 720
SinI GGWCC 2 cut(s) 48, 2036
SlaI CTCGAG 1 cut(s) 1199
SmiMI CAYNNNNRTG 2 cut(s) 177, 879
SmlI CTYRAG 4 cut(s) 1199, 1304, 1364, 1523
SmoI CTYRAG 4 cut(s) 1199, 1304, 1364, 1523
SnaBI TACGTA 1 cut(s) 903
SsiI CCGC 3 cut(s) 384, 1032, 1355
SspI AATATT 2 cut(s) 963, 1120
SspMI CTAG 3 cut(s) 1140, 1338, 1659
SstI GAGCTC 3 cut(s) 869, 896, 1278
StyD4I CCNGG 1 cut(s) 1930
TaaI ACNGT 4 cut(s) 176, 1003, 1571, 1942
TaiI ACGT 3 cut(s) 905, 1726, 1797
TaqI TCGA 9 cut(s) 87, 362, 531, 720, 849, 918, 971, 1090, 1200
TatI WGTACW 2 cut(s) 807, 1344
TfiI GAWTC 6 cut(s) 262, 571, 595, 1021, 1815, 2298
Tru1I TTAA 8 cut(s) 540, 672, 945, 1011, 1884, 2094, 2243, 2439
Tru9I TTAA 8 cut(s) 540, 672, 945, 1011, 1884, 2094, 2243, 2439
TscAI CASTG 3 cut(s) 81, 193, 2379
TseFI GTSAC 1 cut(s) 1003
TseI GCWGC 6 cut(s) 742, 799, 1494, 1825, 2233, 2339
Tsp45I GTSAC 1 cut(s) 1003
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 3 cut(s) 81, 193, 2379
VpaK11BI GGWCC 2 cut(s) 48, 2036
XagI CCTNNNNNAGG 1 cut(s) 2355
XapI RAATTY 1 cut(s) 1650
XceI RCATGY 3 cut(s) 569, 2176, 2521
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XhoI CTCGAG 1 cut(s) 1199
XmiI GTMKAC 1 cut(s) 163
XmnI GAANNNNTTC 3 cut(s) 1086, 1484, 2205
XspI CTAG 3 cut(s) 1140, 1338, 1659
Zsp2I ATGCAT 2 cut(s) 1240, 1447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.