Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 119, 163 |
| AccIII | TCCGGA | 1 cut(s) | 327 |
| AciI | CCGC | 5 cut(s) | 119, 161, 254, 257, 395 |
| AclWI | GGATC | 3 cut(s) | 231, 307, 320 |
| AcsI | RAATTY | 2 cut(s) | 383, 465 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 142, 345 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 411 |
| AjnI | CCWGG | 1 cut(s) | 174 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 72, 104 |
| Alw26I | GTCTC | 1 cut(s) | 441 |
| AlwI | GGATC | 3 cut(s) | 231, 307, 320 |
| Aor13HI | TCCGGA | 1 cut(s) | 327 |
| AoxI | GGCC | 3 cut(s) | 11, 158, 472 |
| ApoI | RAATTY | 2 cut(s) | 383, 465 |
| AspLEI | GCGC | 2 cut(s) | 119, 165 |
| AspS9I | GGNCC | 5 cut(s) | 12, 158, 259, 421, 472 |
| AsuHPI | GGTGA | 1 cut(s) | 157 |
| AvaII | GGWCC | 2 cut(s) | 259, 421 |
| BamHI | GGATCC | 1 cut(s) | 312 |
| BccI | CCATC | 5 cut(s) | 58, 104, 142, 205, 325 |
| BciT130I | CCWGG | 1 cut(s) | 176 |
| BciVI | GTATCC | 1 cut(s) | 240 |
| BcoDI | GTCTC | 1 cut(s) | 441 |
| BfaI | CTAG | 1 cut(s) | 44 |
| BfuI | GTATCC | 1 cut(s) | 240 |
| BisI | GCNGC | 2 cut(s) | 161, 255 |
| BlsI | GCNGC | 2 cut(s) | 162, 256 |
| Bme1390I | CCNGG | 1 cut(s) | 176 |
| Bme18I | GGWCC | 2 cut(s) | 259, 421 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 411 |
| BmgT120I | GGNCC | 5 cut(s) | 12, 158, 259, 421, 472 |
| BmiI | GGNNCC | 3 cut(s) | 314, 423, 473 |
| BmrFI | CCNGG | 1 cut(s) | 176 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 421, 453, 423, 455 |
| BpmI | CTGGAG | 1 cut(s) | 437 |
| Bsa29I | ATCGAT | 1 cut(s) | 105 |
| BsaJI | CCNNGG | 1 cut(s) | 368 |
| BsaWI | WCCGGW | 1 cut(s) | 327 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 59, 72, 89, 102 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 142, 345 |
| Bse118I | RCCGGY | 2 cut(s) | 165, 250 |
| Bse1I | ACTGG | 2 cut(s) | 262, 482 |
| BseAI | TCCGGA | 1 cut(s) | 327 |
| BseBI | CCWGG | 1 cut(s) | 176 |
| BseCI | ATCGAT | 1 cut(s) | 105 |
| BseDI | CCNNGG | 1 cut(s) | 368 |
| BseGI | GGATG | 4 cut(s) | 76, 130, 216, 336 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 142, 345 |
| BseMII | CTCAG | 1 cut(s) | 419 |
| BseNI | ACTGG | 2 cut(s) | 262, 482 |
| Bsh1236I | CGCG | 2 cut(s) | 119, 163 |
| Bsh1285I | CGRYCG | 2 cut(s) | 105, 271 |
| BshFI | GGCC | 3 cut(s) | 13, 160, 474 |
| BshVI | ATCGAT | 1 cut(s) | 105 |
| BsiEI | CGRYCG | 2 cut(s) | 105, 271 |
| BsiSI | CCGG | 3 cut(s) | 166, 251, 328 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 142, 345 |
| BsmAI | GTCTC | 1 cut(s) | 441 |
| BsnI | GGCC | 3 cut(s) | 13, 160, 474 |
| Bsp13I | TCCGGA | 1 cut(s) | 327 |
| Bsp143I | GATC | 5 cut(s) | 102, 236, 268, 312, 340 |
| Bsp19I | CCATGG | 1 cut(s) | 368 |
| BspACI | CCGC | 5 cut(s) | 119, 161, 254, 257, 395 |
| BspANI | GGCC | 3 cut(s) | 13, 160, 474 |
| BspCNI | CTCAG | 1 cut(s) | 420 |
| BspDI | ATCGAT | 1 cut(s) | 105 |
| BspEI | TCCGGA | 1 cut(s) | 327 |
| BspFNI | CGCG | 2 cut(s) | 119, 163 |
| BspLI | GGNNCC | 3 cut(s) | 314, 423, 473 |
| BspPI | GGATC | 3 cut(s) | 231, 307, 320 |
| BsrFI | RCCGGY | 2 cut(s) | 165, 250 |
| BsrI | ACTGG | 2 cut(s) | 262, 482 |
| BssAI | RCCGGY | 2 cut(s) | 165, 250 |
| BssECI | CCNNGG | 1 cut(s) | 368 |
| BssMI | GATC | 5 cut(s) | 102, 236, 268, 312, 340 |
| BssT1I | CCWWGG | 1 cut(s) | 368 |
| Bst2UI | CCWGG | 1 cut(s) | 176 |
| Bst4CI | ACNGT | 1 cut(s) | 348 |
| BstDEI | CTNAG | 2 cut(s) | 60, 428 |
| BstDSI | CCRYGG | 1 cut(s) | 368 |
| BstF5I | GGATG | 4 cut(s) | 76, 130, 216, 336 |
| BstFNI | CGCG | 2 cut(s) | 119, 163 |
| BstHHI | GCGC | 2 cut(s) | 119, 165 |
| BstKTI | GATC | 5 cut(s) | 105, 239, 271, 315, 343 |
| BstMAI | GTCTC | 1 cut(s) | 441 |
| BstMBI | GATC | 5 cut(s) | 102, 236, 268, 312, 340 |
| BstMCI | CGRYCG | 2 cut(s) | 105, 271 |
| BstNI | CCWGG | 1 cut(s) | 176 |
| BstSCI | CCNGG | 1 cut(s) | 174 |
| BstUI | CGCG | 2 cut(s) | 119, 163 |
| BstX2I | RGATCY | 1 cut(s) | 312 |
| BstYI | RGATCY | 1 cut(s) | 312 |
| Bsu15I | ATCGAT | 1 cut(s) | 105 |
| BsuI | GTATCC | 1 cut(s) | 240 |
| BsuRI | GGCC | 3 cut(s) | 13, 160, 474 |
| BsuTUI | ATCGAT | 1 cut(s) | 105 |
| BtgI | CCRYGG | 1 cut(s) | 368 |
| BtsCI | GGATG | 4 cut(s) | 76, 130, 216, 336 |
| BtsI | GCAGTG | 1 cut(s) | 408 |
| BtsIMutI | CAGTG | 1 cut(s) | 408 |
| CfoI | GCGC | 2 cut(s) | 119, 165 |
| Cfr10I | RCCGGY | 2 cut(s) | 165, 250 |
| Cfr13I | GGNCC | 5 cut(s) | 12, 158, 259, 421, 472 |
| ClaI | ATCGAT | 1 cut(s) | 105 |
| CseI | GACGC | 1 cut(s) | 202 |
| CsiI | ACCWGGT | 1 cut(s) | 174 |
| CviAII | CATG | 2 cut(s) | 283, 369 |
| CviJI | RGCY | 4 cut(s) | 13, 160, 202, 474 |
| CviKI_1 | RGCY | 4 cut(s) | 13, 160, 202, 474 |
| DdeI | CTNAG | 2 cut(s) | 60, 428 |
| DpnI | GATC | 5 cut(s) | 104, 238, 270, 314, 342 |
| DpnII | GATC | 5 cut(s) | 102, 236, 268, 312, 340 |
| DriI | GACNNNNNGTC | 1 cut(s) | 411 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 411 |
| EciI | GGCGGA | 1 cut(s) | 272 |
| Eco130I | CCWWGG | 1 cut(s) | 368 |
| Eco47I | GGWCC | 2 cut(s) | 259, 421 |
| EcoO109I | RGGNCCY | 2 cut(s) | 421, 472 |
| EcoRI | GAATTC | 1 cut(s) | 465 |
| EcoRII | CCWGG | 1 cut(s) | 174 |
| EcoT14I | CCWWGG | 1 cut(s) | 368 |
| ErhI | CCWWGG | 1 cut(s) | 368 |
| FaeI | CATG | 2 cut(s) | 286, 372 |
| FaiI | YATR | 6 cut(s) | 205, 207, 230, 284, 303, 370 |
| FatI | CATG | 2 cut(s) | 282, 368 |
| Fnu4HI | GCNGC | 2 cut(s) | 161, 255 |
| FokI | GGATG | 4 cut(s) | 83, 137, 223, 343 |
| Fsp4HI | GCNGC | 2 cut(s) | 161, 255 |
| FspBI | CTAG | 1 cut(s) | 44 |
| GlaI | GCGC | 2 cut(s) | 118, 164 |
| GluI | GCNGC | 2 cut(s) | 161, 255 |
| GsuI | CTGGAG | 1 cut(s) | 437 |
| HaeIII | GGCC | 3 cut(s) | 13, 160, 474 |
| HapII | CCGG | 3 cut(s) | 166, 251, 328 |
| HgaI | GACGC | 1 cut(s) | 202 |
| HhaI | GCGC | 2 cut(s) | 119, 165 |
| Hin1II | CATG | 2 cut(s) | 286, 372 |
| Hin6I | GCGC | 2 cut(s) | 117, 163 |
| HinP1I | GCGC | 2 cut(s) | 117, 163 |
| HinfI | GANTC | 1 cut(s) | 335 |
| HpaII | CCGG | 3 cut(s) | 166, 251, 328 |
| HphI | GGTGA | 1 cut(s) | 157 |
| Hpy188I | TCNGA | 7 cut(s) | 93, 142, 182, 268, 312, 340, 429 |
| Hpy188III | TCNNGA | 2 cut(s) | 328, 416 |
| HpyAV | CCTTC | 4 cut(s) | 147, 334, 353, 485 |
| HpyCH4III | ACNGT | 1 cut(s) | 348 |
| HpyF3I | CTNAG | 2 cut(s) | 60, 428 |
| Hsp92II | CATG | 2 cut(s) | 286, 372 |
| HspAI | GCGC | 2 cut(s) | 117, 163 |
| Kpn2I | TCCGGA | 1 cut(s) | 327 |
| Kzo9I | GATC | 5 cut(s) | 102, 236, 268, 312, 340 |
| LmnI | GCTCC | 1 cut(s) | 278 |
| LpnPI | CCDG | 8 cut(s) | 161, 179, 188, 264, 275, 289, 341, 401 |
| MabI | ACCWGGT | 1 cut(s) | 174 |
| MaeI | CTAG | 1 cut(s) | 44 |
| MaeIII | GTNAC | 1 cut(s) | 403 |
| MalI | GATC | 5 cut(s) | 104, 238, 270, 314, 342 |
| MboI | GATC | 5 cut(s) | 102, 236, 268, 312, 340 |
| MflI | RGATCY | 1 cut(s) | 312 |
| MluCI | AATT | 2 cut(s) | 383, 465 |
| MlyI | GAGTC | 1 cut(s) | 344 |
| MmeI | TCCRAC | 2 cut(s) | 160, 336 |
| MnlI | CCTC | 7 cut(s) | 25, 61, 74, 136, 290, 412, 435 |
| MroI | TCCGGA | 1 cut(s) | 327 |
| MseI | TTAA | 2 cut(s) | 188, 461 |
| MslI | CAYNNNNRTG | 1 cut(s) | 227 |
| MspI | CCGG | 3 cut(s) | 166, 251, 328 |
| MspR9I | CCNGG | 1 cut(s) | 176 |
| MvaI | CCWGG | 1 cut(s) | 176 |
| MvnI | CGCG | 2 cut(s) | 119, 163 |
| NcoI | CCATGG | 1 cut(s) | 368 |
| NdeII | GATC | 5 cut(s) | 102, 236, 268, 312, 340 |
| NlaIII | CATG | 2 cut(s) | 286, 372 |
| NlaIV | GGNNCC | 3 cut(s) | 314, 423, 473 |
| NmuCI | GTSAC | 1 cut(s) | 403 |
| PkrI | GCNGC | 2 cut(s) | 162, 256 |
| Ple19I | CGATCG | 2 cut(s) | 105, 271 |
| PleI | GAGTC | 1 cut(s) | 343 |
| PpsI | GAGTC | 1 cut(s) | 343 |
| PpuMI | RGGWCCY | 1 cut(s) | 421 |
| Psp5II | RGGWCCY | 1 cut(s) | 421 |
| Psp6I | CCWGG | 1 cut(s) | 174 |
| PspGI | CCWGG | 1 cut(s) | 174 |
| PspN4I | GGNNCC | 3 cut(s) | 314, 423, 473 |
| PspPI | GGNCC | 5 cut(s) | 12, 158, 259, 421, 472 |
| PspPPI | RGGWCCY | 1 cut(s) | 421 |
| PsuI | RGATCY | 1 cut(s) | 312 |
| PvuI | CGATCG | 2 cut(s) | 105, 271 |
| RseI | CAYNNNNRTG | 1 cut(s) | 227 |
| SaqAI | TTAA | 2 cut(s) | 188, 461 |
| SatI | GCNGC | 2 cut(s) | 161, 255 |
| Sau3AI | GATC | 5 cut(s) | 102, 236, 268, 312, 340 |
| Sau96I | GGNCC | 5 cut(s) | 12, 158, 259, 421, 472 |
| SchI | GAGTC | 1 cut(s) | 344 |
| ScrFI | CCNGG | 1 cut(s) | 176 |
| SetI | ASST | 3 cut(s) | 85, 147, 177 |
| SexAI | ACCWGGT | 1 cut(s) | 174 |
| SinI | GGWCC | 2 cut(s) | 259, 421 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 227 |
| Sse9I | AATT | 2 cut(s) | 383, 465 |
| SsiI | CCGC | 5 cut(s) | 119, 161, 254, 257, 395 |
| SspMI | CTAG | 1 cut(s) | 44 |
| StyD4I | CCNGG | 1 cut(s) | 174 |
| StyI | CCWWGG | 1 cut(s) | 368 |
| TaaI | ACNGT | 1 cut(s) | 348 |
| TaqI | TCGA | 1 cut(s) | 105 |
| TasI | AATT | 2 cut(s) | 383, 465 |
| TauI | GCSGC | 2 cut(s) | 163, 257 |
| Tru1I | TTAA | 2 cut(s) | 188, 461 |
| Tru9I | TTAA | 2 cut(s) | 188, 461 |
| TscAI | CASTG | 1 cut(s) | 408 |
| TseFI | GTSAC | 1 cut(s) | 403 |
| Tsp45I | GTSAC | 1 cut(s) | 403 |
| TspRI | CASTG | 1 cut(s) | 408 |
| VpaK11BI | GGWCC | 2 cut(s) | 259, 421 |
| XapI | RAATTY | 2 cut(s) | 383, 465 |
| XspI | CTAG | 1 cut(s) | 44 |