ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 308 |
| AarI | CACCTGC | 2 cut(s) | 1001, 1106 |
| Acc36I | ACCTGC | 2 cut(s) | 1001, 1106 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 690 |
| AciI | CCGC | 3 cut(s) | 587, 953, 1167 |
| AclWI | GGATC | 4 cut(s) | 263, 367, 515, 1042 |
| AcoI | YGGCCR | 1 cut(s) | 692 |
| AcsI | RAATTY | 3 cut(s) | 104, 736, 748 |
| AcuI | CTGAAG | 1 cut(s) | 831 |
| AcvI | CACGTG | 1 cut(s) | 457 |
| AcyI | GRCGYC | 1 cut(s) | 1236 |
| AfaI | GTAC | 7 cut(s) | 166, 187, 225, 396, 597, 852, 1197 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 328, 629, 690 |
| AflII | CTTAAG | 1 cut(s) | 158 |
| AgsI | TTSAA | 5 cut(s) | 39, 45, 86, 100, 262 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 765 |
| AluBI | AGCT | 7 cut(s) | 34, 283, 908, 931, 1046, 1128, 1228 |
| AluI | AGCT | 7 cut(s) | 34, 283, 908, 931, 1046, 1128, 1228 |
| Alw21I | GWGCWC | 1 cut(s) | 1230 |
| Alw26I | GTCTC | 4 cut(s) | 413, 801, 881, 1185 |
| AlwI | GGATC | 4 cut(s) | 263, 367, 515, 1042 |
| AoxI | GGCC | 4 cut(s) | 93, 535, 659, 692 |
| ApeKI | GCWGC | 1 cut(s) | 491 |
| ApoI | RAATTY | 3 cut(s) | 104, 736, 748 |
| AseI | ATTAAT | 2 cut(s) | 675, 783 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 104, 257 |
| AspS9I | GGNCC | 2 cut(s) | 536, 659 |
| AsuC2I | CCSGG | 1 cut(s) | 341 |
| AsuHPI | GGTGA | 2 cut(s) | 203, 343 |
| BanII | GRGCYC | 2 cut(s) | 1162, 1230 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1147, 1179 |
| BbrPI | CACGTG | 1 cut(s) | 457 |
| BbsI | GAAGAC | 2 cut(s) | 801, 842 |
| Bbv12I | GWGCWC | 1 cut(s) | 1230 |
| BbvI | GCAGC | 1 cut(s) | 478 |
| BccI | CCATC | 3 cut(s) | 409, 476, 996 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 553, 587 |
| BcnI | CCSGG | 1 cut(s) | 341 |
| BcoDI | GTCTC | 4 cut(s) | 413, 801, 881, 1185 |
| BfaI | CTAG | 6 cut(s) | 59, 513, 641, 753, 813, 831 |
| BfmI | CTRYAG | 2 cut(s) | 492, 715 |
| BfrI | CTTAAG | 1 cut(s) | 158 |
| BfuAI | ACCTGC | 2 cut(s) | 1001, 1106 |
| BglII | AGATCT | 1 cut(s) | 55 |
| BisI | GCNGC | 1 cut(s) | 492 |
| BlsI | GCNGC | 1 cut(s) | 493 |
| Bme1390I | CCNGG | 1 cut(s) | 341 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 765 |
| BmgT120I | GGNCC | 2 cut(s) | 536, 659 |
| BmiI | GGNNCC | 1 cut(s) | 345 |
| BmrFI | CCNGG | 1 cut(s) | 341 |
| BmsI | GCATC | 1 cut(s) | 1035 |
| BpiI | GAAGAC | 2 cut(s) | 801, 842 |
| BpuEI | CTTGAG | 3 cut(s) | 609, 1026, 1108 |
| BpuMI | CCSGG | 1 cut(s) | 341 |
| BsaAI | YACGTR | 1 cut(s) | 457 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1025 |
| BsaHI | GRCGYC | 1 cut(s) | 1236 |
| BsaJI | CCNNGG | 4 cut(s) | 339, 471, 524, 1199 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 693, 723 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 328, 629, 690 |
| Bse1I | ACTGG | 3 cut(s) | 96, 402, 1213 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1025 |
| BseDI | CCNNGG | 4 cut(s) | 339, 471, 524, 1199 |
| BseGI | GGATG | 3 cut(s) | 420, 1007, 1026 |
| BseJI | GATNNNNATC | 1 cut(s) | 1025 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 328, 629, 690 |
| BseMII | CTCAG | 1 cut(s) | 795 |
| BseNI | ACTGG | 3 cut(s) | 96, 402, 1213 |
| BseRI | GAGGAG | 4 cut(s) | 209, 517, 612, 659 |
| BseXI | GCAGC | 1 cut(s) | 478 |
| BshFI | GGCC | 4 cut(s) | 95, 537, 661, 694 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1230 |
| BsiSI | CCGG | 1 cut(s) | 341 |
| BslFI | GGGAC | 1 cut(s) | 1223 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 328, 629, 690 |
| BsmAI | GTCTC | 4 cut(s) | 413, 801, 881, 1185 |
| BsmBI | CGTCTC | 2 cut(s) | 801, 1185 |
| BsmFI | GGGAC | 1 cut(s) | 1223 |
| BsmI | GAATGC | 1 cut(s) | 1102 |
| BsnI | GGCC | 4 cut(s) | 95, 537, 661, 694 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1162, 1230 |
| Bsp143I | GATC | 8 cut(s) | 19, 55, 268, 293, 359, 368, 520, 1034 |
| Bsp19I | CCATGG | 1 cut(s) | 471 |
| BspACI | CCGC | 3 cut(s) | 587, 953, 1167 |
| BspANI | GGCC | 4 cut(s) | 95, 537, 661, 694 |
| BspCNI | CTCAG | 1 cut(s) | 796 |
| BspLI | GGNNCC | 1 cut(s) | 345 |
| BspMAI | CTGCAG | 1 cut(s) | 496 |
| BspMI | ACCTGC | 2 cut(s) | 1001, 1106 |
| BspPI | GGATC | 4 cut(s) | 263, 367, 515, 1042 |
| BspTI | CTTAAG | 1 cut(s) | 158 |
| BsrI | ACTGG | 3 cut(s) | 96, 402, 1213 |
| BssECI | CCNNGG | 4 cut(s) | 339, 471, 524, 1199 |
| BssMI | GATC | 8 cut(s) | 19, 55, 268, 293, 359, 368, 520, 1034 |
| BssNI | GRCGYC | 1 cut(s) | 1236 |
| BssT1I | CCWWGG | 2 cut(s) | 471, 1199 |
| Bst4CI | ACNGT | 1 cut(s) | 228 |
| Bst6I | CTCTTC | 1 cut(s) | 974 |
| BstACI | GRCGYC | 1 cut(s) | 1236 |
| BstAFI | CTTAAG | 1 cut(s) | 158 |
| BstBAI | YACGTR | 1 cut(s) | 457 |
| BstDEI | CTNAG | 3 cut(s) | 804, 1030, 1129 |
| BstDSI | CCRYGG | 1 cut(s) | 471 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 627 |
| BstF5I | GGATG | 3 cut(s) | 420, 1007, 1026 |
| BstKTI | GATC | 8 cut(s) | 22, 58, 271, 296, 362, 371, 523, 1037 |
| BstMAI | GTCTC | 4 cut(s) | 413, 801, 881, 1185 |
| BstMBI | GATC | 8 cut(s) | 19, 55, 268, 293, 359, 368, 520, 1034 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1166 |
| BstSCI | CCNGG | 1 cut(s) | 339 |
| BstSFI | CTRYAG | 2 cut(s) | 492, 715 |
| BstV1I | GCAGC | 1 cut(s) | 478 |
| BstV2I | GAAGAC | 2 cut(s) | 801, 842 |
| BstX2I | RGATCY | 3 cut(s) | 55, 520, 1034 |
| BstYI | RGATCY | 3 cut(s) | 55, 520, 1034 |
| BsuRI | GGCC | 4 cut(s) | 95, 537, 661, 694 |
| BtgI | CCRYGG | 1 cut(s) | 471 |
| BtsCI | GGATG | 3 cut(s) | 420, 1007, 1026 |
| BtsI | GCAGTG | 1 cut(s) | 501 |
| BtsIMutI | CAGTG | 1 cut(s) | 501 |
| BveI | ACCTGC | 2 cut(s) | 1001, 1106 |
| Cfr13I | GGNCC | 2 cut(s) | 536, 659 |
| CseI | GACGC | 1 cut(s) | 1225 |
| Csp6I | GTAC | 7 cut(s) | 165, 186, 224, 395, 596, 851, 1196 |
| CviAII | CATG | 4 cut(s) | 472, 571, 883, 1101 |
| CviQI | GTAC | 7 cut(s) | 165, 186, 224, 395, 596, 851, 1196 |
| DdeI | CTNAG | 3 cut(s) | 804, 1030, 1129 |
| DpnI | GATC | 8 cut(s) | 21, 57, 270, 295, 361, 370, 522, 1036 |
| DpnII | GATC | 8 cut(s) | 19, 55, 268, 293, 359, 368, 520, 1034 |
| DraI | TTTAAA | 1 cut(s) | 940 |
| DriI | GACNNNNNGTC | 1 cut(s) | 765 |
| EaeI | YGGCCR | 1 cut(s) | 692 |
| Eam1104I | CTCTTC | 1 cut(s) | 974 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 765 |
| EarI | CTCTTC | 1 cut(s) | 974 |
| EciI | GGCGGA | 1 cut(s) | 602 |
| Ecl136II | GAGCTC | 1 cut(s) | 1228 |
| Eco130I | CCWWGG | 2 cut(s) | 471, 1199 |
| Eco24I | GRGCYC | 2 cut(s) | 1162, 1230 |
| Eco53kI | GAGCTC | 1 cut(s) | 1228 |
| Eco57I | CTGAAG | 1 cut(s) | 831 |
| Eco72I | CACGTG | 1 cut(s) | 457 |
| EcoICRI | GAGCTC | 1 cut(s) | 1228 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 627 |
| EcoRI | GAATTC | 1 cut(s) | 748 |
| EcoT14I | CCWWGG | 2 cut(s) | 471, 1199 |
| EcoT22I | ATGCAT | 1 cut(s) | 1102 |
| EcoT38I | GRGCYC | 2 cut(s) | 1162, 1230 |
| ErhI | CCWWGG | 2 cut(s) | 471, 1199 |
| Esp3I | CGTCTC | 2 cut(s) | 801, 1185 |
| FaeI | CATG | 4 cut(s) | 475, 574, 886, 1104 |
| FaqI | GGGAC | 1 cut(s) | 1223 |
| FatI | CATG | 4 cut(s) | 471, 570, 882, 1100 |
| Fnu4HI | GCNGC | 1 cut(s) | 492 |
| FokI | GGATG | 3 cut(s) | 427, 1014, 1033 |
| FriOI | GRGCYC | 2 cut(s) | 1162, 1230 |
| Fsp4HI | GCNGC | 1 cut(s) | 492 |
| FspBI | CTAG | 6 cut(s) | 59, 513, 641, 753, 813, 831 |
| GluI | GCNGC | 1 cut(s) | 492 |
| HaeIII | GGCC | 4 cut(s) | 95, 537, 661, 694 |
| HapII | CCGG | 1 cut(s) | 341 |
| HgaI | GACGC | 1 cut(s) | 1225 |
| Hin1I | GRCGYC | 1 cut(s) | 1236 |
| Hin1II | CATG | 4 cut(s) | 475, 574, 886, 1104 |
| HincII | GTYRAC | 3 cut(s) | 16, 712, 1210 |
| HindII | GTYRAC | 3 cut(s) | 16, 712, 1210 |
| HindIII | AAGCTT | 3 cut(s) | 32, 929, 1126 |
| HinfI | GANTC | 6 cut(s) | 431, 509, 720, 806, 1148, 1258 |
| HpaI | GTTAAC | 2 cut(s) | 712, 1210 |
| HpaII | CCGG | 1 cut(s) | 341 |
| HphI | GGTGA | 2 cut(s) | 203, 343 |
| Hpy166II | GTNNAC | 3 cut(s) | 16, 712, 1210 |
| Hpy188I | TCNGA | 4 cut(s) | 528, 654, 789, 1095 |
| Hpy188III | TCNNGA | 5 cut(s) | 59, 272, 753, 1152, 1266 |
| Hpy8I | GTNNAC | 3 cut(s) | 16, 712, 1210 |
| HpyAV | CCTTC | 7 cut(s) | 142, 195, 322, 968, 1000, 1149, 1226 |
| HpyCH4III | ACNGT | 1 cut(s) | 228 |
| HpyCH4IV | ACGT | 2 cut(s) | 456, 1194 |
| HpyCH4V | TGCA | 5 cut(s) | 221, 403, 494, 859, 1100 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1166 |
| HpyF3I | CTNAG | 3 cut(s) | 804, 1030, 1129 |
| HpySE526I | ACGT | 2 cut(s) | 456, 1194 |
| Hsp92I | GRCGYC | 1 cut(s) | 1236 |
| Hsp92II | CATG | 4 cut(s) | 475, 574, 886, 1104 |
| KspAI | GTTAAC | 2 cut(s) | 712, 1210 |
| Kzo9I | GATC | 8 cut(s) | 19, 55, 268, 293, 359, 368, 520, 1034 |
| LmnI | GCTCC | 2 cut(s) | 4, 1225 |
| Lsp1109I | GCAGC | 1 cut(s) | 478 |
| LweI | GCATC | 1 cut(s) | 1035 |
| MaeI | CTAG | 6 cut(s) | 59, 513, 641, 753, 813, 831 |
| MaeII | ACGT | 2 cut(s) | 456, 1194 |
| MaeIII | GTNAC | 1 cut(s) | 123 |
| MalI | GATC | 8 cut(s) | 21, 57, 270, 295, 361, 370, 522, 1036 |
| MboI | GATC | 8 cut(s) | 19, 55, 268, 293, 359, 368, 520, 1034 |
| MflI | RGATCY | 3 cut(s) | 55, 520, 1034 |
| MhlI | GDGCHC | 2 cut(s) | 1162, 1230 |
| MlyI | GAGTC | 2 cut(s) | 714, 815 |
| MmeI | TCCRAC | 1 cut(s) | 1168 |
| Mph1103I | ATGCAT | 1 cut(s) | 1102 |
| MroXI | GAANNNNTTC | 2 cut(s) | 104, 257 |
| MslI | CAYNNNNRTG | 3 cut(s) | 216, 1053, 1253 |
| MspCI | CTTAAG | 1 cut(s) | 158 |
| MspI | CCGG | 1 cut(s) | 341 |
| MspR9I | CCNGG | 1 cut(s) | 341 |
| Mva1269I | GAATGC | 1 cut(s) | 1102 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1166 |
| NciI | CCSGG | 1 cut(s) | 341 |
| NcoI | CCATGG | 1 cut(s) | 471 |
| NdeII | GATC | 8 cut(s) | 19, 55, 268, 293, 359, 368, 520, 1034 |
| NlaIII | CATG | 4 cut(s) | 475, 574, 886, 1104 |
| NlaIV | GGNNCC | 1 cut(s) | 345 |
| NsiI | ATGCAT | 1 cut(s) | 1102 |
| PaqCI | CACCTGC | 2 cut(s) | 1001, 1106 |
| PctI | GAATGC | 1 cut(s) | 1102 |
| PdmI | GAANNNNTTC | 2 cut(s) | 104, 257 |
| PfeI | GAWTC | 4 cut(s) | 431, 509, 1148, 1258 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 690 |
| PkrI | GCNGC | 1 cut(s) | 493 |
| PleI | GAGTC | 2 cut(s) | 714, 814 |
| PmaCI | CACGTG | 1 cut(s) | 457 |
| PmlI | CACGTG | 1 cut(s) | 457 |
| PpsI | GAGTC | 2 cut(s) | 714, 814 |
| Ppu21I | YACGTR | 1 cut(s) | 457 |
| PshBI | ATTAAT | 2 cut(s) | 675, 783 |
| PsiI | TTATAA | 1 cut(s) | 308 |
| Psp124BI | GAGCTC | 1 cut(s) | 1230 |
| PspCI | CACGTG | 1 cut(s) | 457 |
| PspN4I | GGNNCC | 1 cut(s) | 345 |
| PspPI | GGNCC | 2 cut(s) | 536, 659 |
| PstI | CTGCAG | 1 cut(s) | 496 |
| PsuI | RGATCY | 3 cut(s) | 55, 520, 1034 |
| RsaI | GTAC | 7 cut(s) | 166, 187, 225, 396, 597, 852, 1197 |
| RsaNI | GTAC | 7 cut(s) | 165, 186, 224, 395, 596, 851, 1196 |
| RseI | CAYNNNNRTG | 3 cut(s) | 216, 1053, 1253 |
| SacI | GAGCTC | 1 cut(s) | 1230 |
| SatI | GCNGC | 1 cut(s) | 492 |
| Sau3AI | GATC | 8 cut(s) | 19, 55, 268, 293, 359, 368, 520, 1034 |
| Sau96I | GGNCC | 2 cut(s) | 536, 659 |
| SchI | GAGTC | 2 cut(s) | 714, 815 |
| ScrFI | CCNGG | 1 cut(s) | 341 |
| SduI | GDGCHC | 2 cut(s) | 1162, 1230 |
| SfaNI | GCATC | 1 cut(s) | 1035 |
| SfcI | CTRYAG | 2 cut(s) | 492, 715 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 216, 1053, 1253 |
| SmlI | CTYRAG | 4 cut(s) | 158, 624, 1041, 1123 |
| SmoI | CTYRAG | 4 cut(s) | 158, 624, 1041, 1123 |
| SsiI | CCGC | 3 cut(s) | 587, 953, 1167 |
| SspI | AATATT | 1 cut(s) | 265 |
| SspMI | CTAG | 6 cut(s) | 59, 513, 641, 753, 813, 831 |
| SstI | GAGCTC | 1 cut(s) | 1230 |
| StyD4I | CCNGG | 1 cut(s) | 339 |
| StyI | CCWWGG | 2 cut(s) | 471, 1199 |
| TaaI | ACNGT | 1 cut(s) | 228 |
| TaiI | ACGT | 2 cut(s) | 459, 1197 |
| TaqI | TCGA | 2 cut(s) | 367, 1230 |
| TaqII | GACCGA | 1 cut(s) | 1197 |
| TatI | WGTACW | 3 cut(s) | 164, 185, 850 |
| TfiI | GAWTC | 4 cut(s) | 431, 509, 1148, 1258 |
| TscAI | CASTG | 1 cut(s) | 501 |
| TseI | GCWGC | 1 cut(s) | 491 |
| TspDTI | ATGAA | 2 cut(s) | 185, 1092 |
| TspGWI | ACGGA | 1 cut(s) | 291 |
| TspRI | CASTG | 1 cut(s) | 501 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 690 |
| Vha464I | CTTAAG | 1 cut(s) | 158 |
| VspI | ATTAAT | 2 cut(s) | 675, 783 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 627 |
| XapI | RAATTY | 3 cut(s) | 104, 736, 748 |
| XbaI | TCTAGA | 2 cut(s) | 58, 752 |
| XmnI | GAANNNNTTC | 2 cut(s) | 104, 257 |
| XspI | CTAG | 6 cut(s) | 59, 513, 641, 753, 813, 831 |
| Zsp2I | ATGCAT | 1 cut(s) | 1102 |