ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 136 |
| AccBSI | CCGCTC | 1 cut(s) | 676 |
| AccII | CGCG | 1 cut(s) | 532 |
| AciI | CCGC | 5 cut(s) | 530, 599, 647, 676, 696 |
| AclWI | GGATC | 2 cut(s) | 1115, 1128 |
| AcsI | RAATTY | 3 cut(s) | 428, 911, 1008 |
| AcuI | CTGAAG | 1 cut(s) | 1010 |
| AcvI | CACGTG | 1 cut(s) | 728 |
| AflIII | ACRYGT | 1 cut(s) | 754 |
| AgeI | ACCGGT | 1 cut(s) | 139 |
| AgsI | TTSAA | 4 cut(s) | 359, 543, 578, 1002 |
| AjnI | CCWGG | 1 cut(s) | 682 |
| AluBI | AGCT | 3 cut(s) | 522, 884, 1136 |
| AluI | AGCT | 3 cut(s) | 522, 884, 1136 |
| AlwI | GGATC | 2 cut(s) | 1115, 1128 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 656 |
| Ama87I | CYCGRG | 1 cut(s) | 345 |
| AoxI | GGCC | 3 cut(s) | 30, 709, 897 |
| ApeKI | GCWGC | 2 cut(s) | 721, 884 |
| ApoI | RAATTY | 3 cut(s) | 428, 911, 1008 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 278, 310 |
| AseI | ATTAAT | 1 cut(s) | 972 |
| AsiGI | ACCGGT | 1 cut(s) | 139 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 847 |
| AspLEI | GCGC | 1 cut(s) | 534 |
| AspS9I | GGNCC | 1 cut(s) | 710 |
| AsuC2I | CCSGG | 2 cut(s) | 346, 347 |
| AsuHPI | GGTGA | 2 cut(s) | 37, 519 |
| AvaI | CYCGRG | 1 cut(s) | 345 |
| BaeGI | GKGCMC | 1 cut(s) | 352 |
| BamHI | GGATCC | 1 cut(s) | 1120 |
| BanI | GGYRCC | 1 cut(s) | 136 |
| BauI | CACGAG | 1 cut(s) | 988 |
| BbrPI | CACGTG | 1 cut(s) | 728 |
| BbsI | GAAGAC | 1 cut(s) | 840 |
| BbvI | GCAGC | 2 cut(s) | 733, 871 |
| BccI | CCATC | 4 cut(s) | 127, 499, 686, 954 |
| BceAI | ACGGC | 1 cut(s) | 17 |
| BciT130I | CCWGG | 1 cut(s) | 684 |
| BcnI | CCSGG | 2 cut(s) | 346, 347 |
| BfaI | CTAG | 2 cut(s) | 92, 326 |
| BisI | GCNGC | 3 cut(s) | 648, 722, 885 |
| BlsI | GCNGC | 3 cut(s) | 649, 723, 886 |
| Bme1390I | CCNGG | 3 cut(s) | 346, 347, 684 |
| BmeT110I | CYCGRG | 1 cut(s) | 345 |
| BmgT120I | GGNCC | 1 cut(s) | 710 |
| BmiI | GGNNCC | 3 cut(s) | 102, 138, 1122 |
| BmrFI | CCNGG | 3 cut(s) | 346, 347, 684 |
| BpiI | GAAGAC | 1 cut(s) | 840 |
| BpuEI | CTTGAG | 1 cut(s) | 360 |
| BpuMI | CCSGG | 2 cut(s) | 346, 347 |
| BsaAI | YACGTR | 1 cut(s) | 728 |
| BsaBI | GATNNNNATC | 1 cut(s) | 279 |
| BsaJI | CCNNGG | 3 cut(s) | 104, 212, 345 |
| BsaWI | WCCGGW | 1 cut(s) | 139 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 395, 425, 606, 636 |
| Bse118I | RCCGGY | 1 cut(s) | 139 |
| Bse1I | ACTGG | 1 cut(s) | 469 |
| Bse8I | GATNNNNATC | 1 cut(s) | 279 |
| BseBI | CCWGG | 1 cut(s) | 684 |
| BseDI | CCNNGG | 3 cut(s) | 104, 212, 345 |
| BseGI | GGATG | 3 cut(s) | 152, 343, 490 |
| BseJI | GATNNNNATC | 1 cut(s) | 279 |
| BseNI | ACTGG | 1 cut(s) | 469 |
| BseSI | GKGCMC | 1 cut(s) | 352 |
| BseXI | GCAGC | 2 cut(s) | 733, 871 |
| Bsh1236I | CGCG | 1 cut(s) | 532 |
| BshFI | GGCC | 3 cut(s) | 32, 711, 899 |
| BshNI | GGYRCC | 1 cut(s) | 136 |
| BshTI | ACCGGT | 1 cut(s) | 139 |
| BsiHKCI | CYCGRG | 1 cut(s) | 345 |
| BsiSI | CCGG | 2 cut(s) | 140, 346 |
| BslFI | GGGAC | 2 cut(s) | 266, 1032 |
| BsmFI | GGGAC | 2 cut(s) | 266, 1032 |
| BsmI | GAATGC | 1 cut(s) | 552 |
| BsnI | GGCC | 3 cut(s) | 32, 711, 899 |
| BsoBI | CYCGRG | 1 cut(s) | 345 |
| Bsp1286I | GDGCHC | 1 cut(s) | 352 |
| Bsp143I | GATC | 2 cut(s) | 280, 1120 |
| Bsp19I | CCATGG | 1 cut(s) | 104 |
| BspACI | CCGC | 5 cut(s) | 530, 599, 647, 676, 696 |
| BspANI | GGCC | 3 cut(s) | 32, 711, 899 |
| BspFNI | CGCG | 1 cut(s) | 532 |
| BspLI | GGNNCC | 3 cut(s) | 102, 138, 1122 |
| BspPI | GGATC | 2 cut(s) | 1115, 1128 |
| BspQI | GCTCTTC | 1 cut(s) | 529 |
| BspT107I | GGYRCC | 1 cut(s) | 136 |
| BsrBI | CCGCTC | 1 cut(s) | 676 |
| BsrFI | RCCGGY | 1 cut(s) | 139 |
| BsrI | ACTGG | 1 cut(s) | 469 |
| BssAI | RCCGGY | 1 cut(s) | 139 |
| BssECI | CCNNGG | 3 cut(s) | 104, 212, 345 |
| BssMI | GATC | 2 cut(s) | 280, 1120 |
| BssSI | CACGAG | 1 cut(s) | 988 |
| BssT1I | CCWWGG | 2 cut(s) | 104, 212 |
| Bst2BI | CACGAG | 1 cut(s) | 988 |
| Bst2UI | CCWGG | 1 cut(s) | 684 |
| Bst4CI | ACNGT | 4 cut(s) | 302, 370, 704, 766 |
| Bst6I | CTCTTC | 4 cut(s) | 53, 321, 529, 1003 |
| BstBAI | YACGTR | 1 cut(s) | 728 |
| BstC8I | GCNNGC | 2 cut(s) | 786, 889 |
| BstDEI | CTNAG | 1 cut(s) | 477 |
| BstDSI | CCRYGG | 1 cut(s) | 104 |
| BstEII | GGTNACC | 1 cut(s) | 678 |
| BstF5I | GGATG | 3 cut(s) | 152, 343, 490 |
| BstFNI | CGCG | 1 cut(s) | 532 |
| BstHHI | GCGC | 1 cut(s) | 534 |
| BstKTI | GATC | 2 cut(s) | 283, 1123 |
| BstMBI | GATC | 2 cut(s) | 280, 1120 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 653, 781 |
| BstNI | CCWGG | 1 cut(s) | 684 |
| BstNSI | RCATGY | 2 cut(s) | 638, 758 |
| BstPI | GGTNACC | 1 cut(s) | 678 |
| BstSCI | CCNGG | 3 cut(s) | 344, 345, 682 |
| BstSLI | GKGCMC | 1 cut(s) | 352 |
| BstUI | CGCG | 1 cut(s) | 532 |
| BstV1I | GCAGC | 2 cut(s) | 733, 871 |
| BstV2I | GAAGAC | 1 cut(s) | 840 |
| BstX2I | RGATCY | 1 cut(s) | 1120 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1048 |
| BstYI | RGATCY | 1 cut(s) | 1120 |
| BsuRI | GGCC | 3 cut(s) | 32, 711, 899 |
| BtgI | CCRYGG | 1 cut(s) | 104 |
| BtsCI | GGATG | 3 cut(s) | 152, 343, 490 |
| BtsIMutI | CAGTG | 1 cut(s) | 762 |
| Cac8I | GCNNGC | 2 cut(s) | 786, 889 |
| CaiI | CAGNNNCTG | 1 cut(s) | 656 |
| CfoI | GCGC | 1 cut(s) | 534 |
| Cfr10I | RCCGGY | 1 cut(s) | 139 |
| Cfr13I | GGNCC | 1 cut(s) | 710 |
| Cfr9I | CCCGGG | 1 cut(s) | 345 |
| CspAI | ACCGGT | 1 cut(s) | 139 |
| CviAII | CATG | 8 cut(s) | 105, 197, 458, 608, 635, 755, 901, 1081 |
| DdeI | CTNAG | 1 cut(s) | 477 |
| DpnI | GATC | 2 cut(s) | 282, 1122 |
| DpnII | GATC | 2 cut(s) | 280, 1120 |
| DraI | TTTAAA | 1 cut(s) | 876 |
| Eam1104I | CTCTTC | 4 cut(s) | 53, 321, 529, 1003 |
| EarI | CTCTTC | 4 cut(s) | 53, 321, 529, 1003 |
| Eco130I | CCWWGG | 2 cut(s) | 104, 212 |
| Eco57I | CTGAAG | 1 cut(s) | 1010 |
| Eco72I | CACGTG | 1 cut(s) | 728 |
| Eco88I | CYCGRG | 1 cut(s) | 345 |
| Eco91I | GGTNACC | 1 cut(s) | 678 |
| EcoO65I | GGTNACC | 1 cut(s) | 678 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 682 |
| EcoT14I | CCWWGG | 2 cut(s) | 104, 212 |
| ErhI | CCWWGG | 2 cut(s) | 104, 212 |
| FaeI | CATG | 8 cut(s) | 108, 200, 461, 611, 638, 758, 904, 1084 |
| FaqI | GGGAC | 2 cut(s) | 266, 1032 |
| FatI | CATG | 8 cut(s) | 104, 196, 457, 607, 634, 754, 900, 1080 |
| FauI | CCCGC | 1 cut(s) | 592 |
| Fnu4HI | GCNGC | 3 cut(s) | 648, 722, 885 |
| FokI | GGATG | 3 cut(s) | 139, 350, 477 |
| Fsp4HI | GCNGC | 3 cut(s) | 648, 722, 885 |
| FspBI | CTAG | 2 cut(s) | 92, 326 |
| GlaI | GCGC | 1 cut(s) | 533 |
| GluI | GCNGC | 3 cut(s) | 648, 722, 885 |
| HaeIII | GGCC | 3 cut(s) | 32, 711, 899 |
| HapII | CCGG | 2 cut(s) | 140, 346 |
| HhaI | GCGC | 1 cut(s) | 534 |
| Hin1II | CATG | 8 cut(s) | 108, 200, 461, 611, 638, 758, 904, 1084 |
| Hin6I | GCGC | 1 cut(s) | 532 |
| HinP1I | GCGC | 1 cut(s) | 532 |
| HincII | GTYRAC | 2 cut(s) | 37, 1143 |
| HindII | GTYRAC | 2 cut(s) | 37, 1143 |
| HinfI | GANTC | 1 cut(s) | 230 |
| HpaII | CCGG | 2 cut(s) | 140, 346 |
| HphI | GGTGA | 2 cut(s) | 37, 519 |
| Hpy166II | GTNNAC | 3 cut(s) | 37, 605, 1143 |
| Hpy188I | TCNGA | 3 cut(s) | 504, 626, 954 |
| Hpy188III | TCNNGA | 5 cut(s) | 92, 284, 335, 543, 1028 |
| Hpy8I | GTNNAC | 3 cut(s) | 37, 605, 1143 |
| HpyAV | CCTTC | 1 cut(s) | 22 |
| HpyCH4III | ACNGT | 4 cut(s) | 302, 370, 704, 766 |
| HpyCH4IV | ACGT | 1 cut(s) | 727 |
| HpyCH4V | TGCA | 4 cut(s) | 82, 164, 461, 1035 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 653, 781 |
| HpyF3I | CTNAG | 1 cut(s) | 477 |
| HpySE526I | ACGT | 1 cut(s) | 727 |
| Hsp92II | CATG | 8 cut(s) | 108, 200, 461, 611, 638, 758, 904, 1084 |
| HspAI | GCGC | 1 cut(s) | 532 |
| Kzo9I | GATC | 2 cut(s) | 280, 1120 |
| LguI | GCTCTTC | 1 cut(s) | 529 |
| Lsp1109I | GCAGC | 2 cut(s) | 733, 871 |
| MaeI | CTAG | 2 cut(s) | 92, 326 |
| MaeII | ACGT | 1 cut(s) | 727 |
| MaeIII | GTNAC | 8 cut(s) | 142, 284, 640, 678, 698, 760, 836, 868 |
| MalI | GATC | 2 cut(s) | 282, 1122 |
| MbiI | CCGCTC | 1 cut(s) | 676 |
| MboI | GATC | 2 cut(s) | 280, 1120 |
| MflI | RGATCY | 1 cut(s) | 1120 |
| MhlI | GDGCHC | 1 cut(s) | 352 |
| MluCI | AATT | 5 cut(s) | 165, 184, 428, 911, 1008 |
| MlyI | GAGTC | 1 cut(s) | 239 |
| MmeI | TCCRAC | 1 cut(s) | 604 |
| MnlI | CCTC | 8 cut(s) | 62, 172, 384, 391, 646, 701, 1006, 1075 |
| MroXI | GAANNNNTTC | 1 cut(s) | 847 |
| MseI | TTAA | 2 cut(s) | 875, 972 |
| MslI | CAYNNNNRTG | 2 cut(s) | 174, 1046 |
| MspI | CCGG | 2 cut(s) | 140, 346 |
| MspR9I | CCNGG | 3 cut(s) | 346, 347, 684 |
| Mva1269I | GAATGC | 1 cut(s) | 552 |
| MvaI | CCWGG | 1 cut(s) | 684 |
| MvnI | CGCG | 1 cut(s) | 532 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 653, 781 |
| NciI | CCSGG | 2 cut(s) | 346, 347 |
| NcoI | CCATGG | 1 cut(s) | 104 |
| NdeII | GATC | 2 cut(s) | 280, 1120 |
| NlaIII | CATG | 8 cut(s) | 108, 200, 461, 611, 638, 758, 904, 1084 |
| NlaIV | GGNNCC | 3 cut(s) | 102, 138, 1122 |
| NmuCI | GTSAC | 2 cut(s) | 284, 760 |
| NspI | RCATGY | 2 cut(s) | 638, 758 |
| PciI | ACATGT | 1 cut(s) | 754 |
| PciSI | GCTCTTC | 1 cut(s) | 529 |
| PctI | GAATGC | 1 cut(s) | 552 |
| PdmI | GAANNNNTTC | 1 cut(s) | 847 |
| PinAI | ACCGGT | 1 cut(s) | 139 |
| PkrI | GCNGC | 3 cut(s) | 649, 723, 886 |
| PleI | GAGTC | 1 cut(s) | 238 |
| PmaCI | CACGTG | 1 cut(s) | 728 |
| PmlI | CACGTG | 1 cut(s) | 728 |
| PpsI | GAGTC | 1 cut(s) | 238 |
| Ppu21I | YACGTR | 1 cut(s) | 728 |
| PscI | ACATGT | 1 cut(s) | 754 |
| PshBI | ATTAAT | 1 cut(s) | 972 |
| Psp6I | CCWGG | 1 cut(s) | 682 |
| PspCI | CACGTG | 1 cut(s) | 728 |
| PspEI | GGTNACC | 1 cut(s) | 678 |
| PspGI | CCWGG | 1 cut(s) | 682 |
| PspN4I | GGNNCC | 3 cut(s) | 102, 138, 1122 |
| PspPI | GGNCC | 1 cut(s) | 710 |
| PstNI | CAGNNNCTG | 1 cut(s) | 656 |
| PsuI | RGATCY | 1 cut(s) | 1120 |
| RseI | CAYNNNNRTG | 2 cut(s) | 174, 1046 |
| SapI | GCTCTTC | 1 cut(s) | 529 |
| SaqAI | TTAA | 2 cut(s) | 875, 972 |
| SatI | GCNGC | 3 cut(s) | 648, 722, 885 |
| Sau3AI | GATC | 2 cut(s) | 280, 1120 |
| Sau96I | GGNCC | 1 cut(s) | 710 |
| SchI | GAGTC | 1 cut(s) | 239 |
| ScrFI | CCNGG | 3 cut(s) | 346, 347, 684 |
| SduI | GDGCHC | 1 cut(s) | 352 |
| SetI | ASST | 6 cut(s) | 402, 524, 730, 886, 1067, 1138 |
| SmaI | CCCGGG | 1 cut(s) | 347 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 174, 1046 |
| SmlI | CTYRAG | 1 cut(s) | 375 |
| SmoI | CTYRAG | 1 cut(s) | 375 |
| Sse9I | AATT | 5 cut(s) | 165, 184, 428, 911, 1008 |
| SsiI | CCGC | 5 cut(s) | 530, 599, 647, 676, 696 |
| SspI | AATATT | 1 cut(s) | 121 |
| SspMI | CTAG | 2 cut(s) | 92, 326 |
| StyD4I | CCNGG | 3 cut(s) | 344, 345, 682 |
| StyI | CCWWGG | 2 cut(s) | 104, 212 |
| TaaI | ACNGT | 4 cut(s) | 302, 370, 704, 766 |
| TaiI | ACGT | 1 cut(s) | 730 |
| TaqI | TCGA | 2 cut(s) | 706, 917 |
| TasI | AATT | 5 cut(s) | 165, 184, 428, 911, 1008 |
| TauI | GCSGC | 1 cut(s) | 650 |
| Tru1I | TTAA | 2 cut(s) | 875, 972 |
| Tru9I | TTAA | 2 cut(s) | 875, 972 |
| TscAI | CASTG | 1 cut(s) | 769 |
| TseFI | GTSAC | 2 cut(s) | 284, 760 |
| TseI | GCWGC | 2 cut(s) | 721, 884 |
| Tsp45I | GTSAC | 2 cut(s) | 284, 760 |
| TspDTI | ATGAA | 8 cut(s) | 158, 185, 191, 308, 429, 656, 840, 917 |
| TspGWI | ACGGA | 2 cut(s) | 242, 320 |
| TspMI | CCCGGG | 1 cut(s) | 345 |
| TspRI | CASTG | 1 cut(s) | 769 |
| VspI | ATTAAT | 1 cut(s) | 972 |
| XapI | RAATTY | 3 cut(s) | 428, 911, 1008 |
| XbaI | TCTAGA | 1 cut(s) | 91 |
| XceI | RCATGY | 2 cut(s) | 638, 758 |
| XmaI | CCCGGG | 1 cut(s) | 345 |
| XmnI | GAANNNNTTC | 1 cut(s) | 847 |
| XspI | CTAG | 2 cut(s) | 92, 326 |