ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 37 - 106 | 3.7e-10 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 229 |
| AciI | CCGC | 4 cut(s) | 229, 530, 541, 877 |
| AclWI | GGATC | 6 cut(s) | 74, 335, 346, 461, 474, 560 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 34, 329, 1223 |
| AgsI | TTSAA | 6 cut(s) | 586, 766, 1009, 1186, 1197, 1263 |
| AjiI | CACGTC | 1 cut(s) | 1145 |
| AjnI | CCWGG | 3 cut(s) | 42, 366, 611 |
| AluBI | AGCT | 2 cut(s) | 982, 1172 |
| AluI | AGCT | 2 cut(s) | 982, 1172 |
| Alw26I | GTCTC | 2 cut(s) | 813, 827 |
| AlwI | GGATC | 6 cut(s) | 74, 335, 346, 461, 474, 560 |
| AoxI | GGCC | 2 cut(s) | 547, 984 |
| ApeKI | GCWGC | 1 cut(s) | 700 |
| AseI | ATTAAT | 2 cut(s) | 605, 917 |
| AspLEI | GCGC | 1 cut(s) | 882 |
| AspS9I | GGNCC | 1 cut(s) | 124 |
| AsuC2I | CCSGG | 2 cut(s) | 908, 1218 |
| AsuHPI | GGTGA | 3 cut(s) | 356, 836, 1119 |
| AsuNHI | GCTAGC | 1 cut(s) | 1172 |
| AvaII | GGWCC | 1 cut(s) | 124 |
| AxyI | CCTNAGG | 1 cut(s) | 503 |
| BaeGI | GKGCMC | 1 cut(s) | 1017 |
| BamHI | GGATCC | 1 cut(s) | 466 |
| BbsI | GAAGAC | 1 cut(s) | 667 |
| BbvI | GCAGC | 1 cut(s) | 687 |
| BccI | CCATC | 8 cut(s) | 248, 323, 457, 479, 619, 650, 1025, 1307 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1225, 1259 |
| BciT130I | CCWGG | 3 cut(s) | 44, 368, 613 |
| BcnI | CCSGG | 2 cut(s) | 908, 1218 |
| BcoDI | GTCTC | 2 cut(s) | 813, 827 |
| BfaI | CTAG | 5 cut(s) | 59, 113, 269, 1053, 1173 |
| BfmI | CTRYAG | 1 cut(s) | 324 |
| BglII | AGATCT | 1 cut(s) | 177 |
| BisI | GCNGC | 2 cut(s) | 701, 878 |
| BlsI | GCNGC | 2 cut(s) | 702, 879 |
| Bme1390I | CCNGG | 5 cut(s) | 44, 368, 613, 908, 1218 |
| Bme18I | GGWCC | 1 cut(s) | 124 |
| BmgBI | CACGTC | 1 cut(s) | 1145 |
| BmgT120I | GGNCC | 1 cut(s) | 124 |
| BmiI | GGNNCC | 4 cut(s) | 321, 468, 534, 756 |
| BmrFI | CCNGG | 5 cut(s) | 44, 368, 613, 908, 1218 |
| BmsI | GCATC | 1 cut(s) | 1051 |
| BmtI | GCTAGC | 1 cut(s) | 1176 |
| BpiI | GAAGAC | 1 cut(s) | 667 |
| BpuMI | CCSGG | 2 cut(s) | 908, 1218 |
| Bsa29I | ATCGAT | 1 cut(s) | 339 |
| BsaBI | GATNNNNATC | 2 cut(s) | 54, 258 |
| BsaJI | CCNNGG | 3 cut(s) | 287, 344, 1098 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 953, 983 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 34, 329, 1223 |
| Bse1I | ACTGG | 2 cut(s) | 841, 891 |
| Bse21I | CCTNAGG | 1 cut(s) | 503 |
| Bse3DI | GCAATG | 1 cut(s) | 1324 |
| Bse8I | GATNNNNATC | 2 cut(s) | 54, 258 |
| BseBI | CCWGG | 3 cut(s) | 44, 368, 613 |
| BseCI | ATCGAT | 1 cut(s) | 339 |
| BseDI | CCNNGG | 3 cut(s) | 287, 344, 1098 |
| BseGI | GGATG | 5 cut(s) | 52, 259, 468, 1066, 1318 |
| BseJI | GATNNNNATC | 2 cut(s) | 54, 258 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 34, 329, 1223 |
| BseMI | GCAATG | 1 cut(s) | 1324 |
| BseMII | CTCAG | 5 cut(s) | 500, 517, 542, 593, 719 |
| BseNI | ACTGG | 2 cut(s) | 841, 891 |
| BseRI | GAGGAG | 2 cut(s) | 209, 974 |
| BseSI | GKGCMC | 1 cut(s) | 1017 |
| BseXI | GCAGC | 1 cut(s) | 687 |
| BshFI | GGCC | 2 cut(s) | 549, 986 |
| BshVI | ATCGAT | 1 cut(s) | 339 |
| BsiSI | CCGG | 2 cut(s) | 908, 1217 |
| BslFI | GGGAC | 1 cut(s) | 1155 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 34, 329, 1223 |
| BsmAI | GTCTC | 2 cut(s) | 813, 827 |
| BsmBI | CGTCTC | 1 cut(s) | 813 |
| BsmFI | GGGAC | 1 cut(s) | 1155 |
| BsmI | GAATGC | 1 cut(s) | 270 |
| BsnI | GGCC | 2 cut(s) | 549, 986 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1017 |
| Bsp19I | CCATGG | 1 cut(s) | 287 |
| BspACI | CCGC | 4 cut(s) | 229, 530, 541, 877 |
| BspANI | GGCC | 2 cut(s) | 549, 986 |
| BspCNI | CTCAG | 5 cut(s) | 501, 516, 543, 592, 720 |
| BspDI | ATCGAT | 1 cut(s) | 339 |
| BspLI | GGNNCC | 4 cut(s) | 321, 468, 534, 756 |
| BspOI | GCTAGC | 1 cut(s) | 1176 |
| BspPI | GGATC | 6 cut(s) | 74, 335, 346, 461, 474, 560 |
| BspQI | GCTCTTC | 1 cut(s) | 1264 |
| BsrBI | CCGCTC | 1 cut(s) | 229 |
| BsrDI | GCAATG | 1 cut(s) | 1324 |
| BsrI | ACTGG | 2 cut(s) | 841, 891 |
| BssECI | CCNNGG | 3 cut(s) | 287, 344, 1098 |
| BssT1I | CCWWGG | 2 cut(s) | 287, 1098 |
| Bst2UI | CCWGG | 3 cut(s) | 44, 368, 613 |
| Bst4CI | ACNGT | 4 cut(s) | 73, 475, 824, 1299 |
| Bst6I | CTCTTC | 2 cut(s) | 789, 1264 |
| BstC8I | GCNNGC | 3 cut(s) | 984, 1174, 1209 |
| BstDEI | CTNAG | 6 cut(s) | 223, 503, 509, 551, 579, 728 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstF5I | GGATG | 5 cut(s) | 52, 259, 468, 1066, 1318 |
| BstHHI | GCGC | 1 cut(s) | 882 |
| BstMAI | GTCTC | 2 cut(s) | 813, 827 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 274, 1263 |
| BstNI | CCWGG | 3 cut(s) | 44, 368, 613 |
| BstSCI | CCNGG | 5 cut(s) | 42, 366, 611, 906, 1216 |
| BstSFI | CTRYAG | 1 cut(s) | 324 |
| BstSLI | GKGCMC | 1 cut(s) | 1017 |
| BstV1I | GCAGC | 1 cut(s) | 687 |
| BstV2I | GAAGAC | 1 cut(s) | 667 |
| BstX2I | RGATCY | 2 cut(s) | 177, 466 |
| BstYI | RGATCY | 2 cut(s) | 177, 466 |
| Bsu15I | ATCGAT | 1 cut(s) | 339 |
| Bsu36I | CCTNAGG | 1 cut(s) | 503 |
| BsuRI | GGCC | 2 cut(s) | 549, 986 |
| BsuTUI | ATCGAT | 1 cut(s) | 339 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtrI | CACGTC | 1 cut(s) | 1145 |
| BtsCI | GGATG | 5 cut(s) | 52, 259, 468, 1066, 1318 |
| Cac8I | GCNNGC | 3 cut(s) | 984, 1174, 1209 |
| CfoI | GCGC | 1 cut(s) | 882 |
| Cfr13I | GGNCC | 1 cut(s) | 124 |
| ClaI | ATCGAT | 1 cut(s) | 339 |
| CseI | GACGC | 1 cut(s) | 584 |
| CviAII | CATG | 4 cut(s) | 288, 595, 617, 1326 |
| CviJI | RGCY | 9 cut(s) | 112, 508, 549, 755, 901, 923, 982, 986, 1172 |
| CviKI_1 | RGCY | 9 cut(s) | 112, 508, 549, 755, 901, 923, 982, 986, 1172 |
| DdeI | CTNAG | 6 cut(s) | 223, 503, 509, 551, 579, 728 |
| Eam1104I | CTCTTC | 2 cut(s) | 789, 1264 |
| EarI | CTCTTC | 2 cut(s) | 789, 1264 |
| Eco130I | CCWWGG | 2 cut(s) | 287, 1098 |
| Eco147I | AGGCCT | 1 cut(s) | 549 |
| Eco47I | GGWCC | 1 cut(s) | 124 |
| Eco81I | CCTNAGG | 1 cut(s) | 503 |
| EcoO109I | RGGNCCY | 1 cut(s) | 124 |
| EcoRII | CCWGG | 3 cut(s) | 42, 366, 611 |
| EcoT14I | CCWWGG | 2 cut(s) | 287, 1098 |
| ErhI | CCWWGG | 2 cut(s) | 287, 1098 |
| Esp3I | CGTCTC | 1 cut(s) | 813 |
| FaeI | CATG | 4 cut(s) | 291, 598, 620, 1329 |
| FaqI | GGGAC | 1 cut(s) | 1155 |
| FatI | CATG | 4 cut(s) | 287, 594, 616, 1325 |
| FauNDI | CATATG | 1 cut(s) | 715 |
| Fnu4HI | GCNGC | 2 cut(s) | 701, 878 |
| FokI | GGATG | 5 cut(s) | 59, 266, 475, 1073, 1325 |
| Fsp4HI | GCNGC | 2 cut(s) | 701, 878 |
| FspBI | CTAG | 5 cut(s) | 59, 113, 269, 1053, 1173 |
| GlaI | GCGC | 1 cut(s) | 881 |
| GluI | GCNGC | 2 cut(s) | 701, 878 |
| HaeIII | GGCC | 2 cut(s) | 549, 986 |
| HapII | CCGG | 2 cut(s) | 908, 1217 |
| HgaI | GACGC | 1 cut(s) | 584 |
| HhaI | GCGC | 1 cut(s) | 882 |
| Hin1II | CATG | 4 cut(s) | 291, 598, 620, 1329 |
| Hin6I | GCGC | 1 cut(s) | 880 |
| HinP1I | GCGC | 1 cut(s) | 880 |
| HincII | GTYRAC | 4 cut(s) | 186, 522, 723, 801 |
| HindII | GTYRAC | 4 cut(s) | 186, 522, 723, 801 |
| HinfI | GANTC | 9 cut(s) | 105, 152, 283, 802, 926, 992, 1086, 1124, 1193 |
| HpaI | GTTAAC | 2 cut(s) | 522, 723 |
| HpaII | CCGG | 2 cut(s) | 908, 1217 |
| HphI | GGTGA | 3 cut(s) | 356, 836, 1119 |
| Hpy166II | GTNNAC | 5 cut(s) | 186, 522, 681, 723, 801 |
| Hpy188I | TCNGA | 4 cut(s) | 345, 482, 931, 991 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 758 |
| Hpy8I | GTNNAC | 5 cut(s) | 186, 522, 681, 723, 801 |
| Hpy99I | CGWCG | 1 cut(s) | 33 |
| HpyAV | CCTTC | 9 cut(s) | 115, 184, 420, 834, 1105, 1132, 1144, 1180, 1303 |
| HpyCH4III | ACNGT | 4 cut(s) | 73, 475, 824, 1299 |
| HpyCH4IV | ACGT | 2 cut(s) | 664, 1144 |
| HpyCH4V | TGCA | 7 cut(s) | 98, 204, 277, 559, 703, 864, 1322 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 274, 1263 |
| HpyF3I | CTNAG | 6 cut(s) | 223, 503, 509, 551, 579, 728 |
| HpySE526I | ACGT | 2 cut(s) | 664, 1144 |
| Hsp92II | CATG | 4 cut(s) | 291, 598, 620, 1329 |
| HspAI | GCGC | 1 cut(s) | 880 |
| KspAI | GTTAAC | 2 cut(s) | 522, 723 |
| LguI | GCTCTTC | 1 cut(s) | 1264 |
| LmnI | GCTCC | 1 cut(s) | 760 |
| Lsp1109I | GCAGC | 1 cut(s) | 687 |
| LweI | GCATC | 1 cut(s) | 1051 |
| MaeI | CTAG | 5 cut(s) | 59, 113, 269, 1053, 1173 |
| MaeII | ACGT | 2 cut(s) | 664, 1144 |
| MaeIII | GTNAC | 3 cut(s) | 633, 1021, 1125 |
| MbiI | CCGCTC | 1 cut(s) | 229 |
| MboII | GAAGA | 6 cut(s) | 148, 672, 806, 1147, 1251, 1318 |
| MfeI | CAATTG | 1 cut(s) | 806 |
| MflI | RGATCY | 2 cut(s) | 177, 466 |
| MhlI | GDGCHC | 1 cut(s) | 1017 |
| MluCI | AATT | 9 cut(s) | 301, 432, 513, 560, 606, 620, 761, 806, 865 |
| MlyI | GAGTC | 4 cut(s) | 161, 292, 796, 1133 |
| MmeI | TCCRAC | 2 cut(s) | 107, 494 |
| MseI | TTAA | 7 cut(s) | 144, 246, 521, 605, 722, 917, 1250 |
| MspI | CCGG | 2 cut(s) | 908, 1217 |
| MspR9I | CCNGG | 5 cut(s) | 44, 368, 613, 908, 1218 |
| MunI | CAATTG | 1 cut(s) | 806 |
| Mva1269I | GAATGC | 1 cut(s) | 270 |
| MvaI | CCWGG | 3 cut(s) | 44, 368, 613 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 274, 1263 |
| NciI | CCSGG | 2 cut(s) | 908, 1218 |
| NcoI | CCATGG | 1 cut(s) | 287 |
| NdeI | CATATG | 1 cut(s) | 715 |
| NheI | GCTAGC | 1 cut(s) | 1172 |
| NlaIII | CATG | 4 cut(s) | 291, 598, 620, 1329 |
| NlaIV | GGNNCC | 4 cut(s) | 321, 468, 534, 756 |
| NmuCI | GTSAC | 1 cut(s) | 1125 |
| PceI | AGGCCT | 1 cut(s) | 549 |
| PciSI | GCTCTTC | 1 cut(s) | 1264 |
| PctI | GAATGC | 1 cut(s) | 270 |
| PfeI | GAWTC | 5 cut(s) | 105, 926, 992, 1086, 1193 |
| PflFI | GACNNNGTC | 1 cut(s) | 666 |
| PfoI | TCCNGGA | 1 cut(s) | 42 |
| PkrI | GCNGC | 2 cut(s) | 702, 879 |
| PleI | GAGTC | 4 cut(s) | 160, 291, 796, 1132 |
| PpsI | GAGTC | 4 cut(s) | 160, 291, 796, 1132 |
| PpuMI | RGGWCCY | 1 cut(s) | 124 |
| PshBI | ATTAAT | 2 cut(s) | 605, 917 |
| Psp5II | RGGWCCY | 1 cut(s) | 124 |
| Psp6I | CCWGG | 3 cut(s) | 42, 366, 611 |
| PspGI | CCWGG | 3 cut(s) | 42, 366, 611 |
| PspN4I | GGNNCC | 4 cut(s) | 321, 468, 534, 756 |
| PspPI | GGNCC | 1 cut(s) | 124 |
| PspPPI | RGGWCCY | 1 cut(s) | 124 |
| PsuI | RGATCY | 2 cut(s) | 177, 466 |
| PsyI | GACNNNGTC | 1 cut(s) | 666 |
| SapI | GCTCTTC | 1 cut(s) | 1264 |
| SaqAI | TTAA | 7 cut(s) | 144, 246, 521, 605, 722, 917, 1250 |
| SatI | GCNGC | 2 cut(s) | 701, 878 |
| Sau96I | GGNCC | 1 cut(s) | 124 |
| SchI | GAGTC | 4 cut(s) | 161, 292, 796, 1133 |
| ScrFI | CCNGG | 5 cut(s) | 44, 368, 613, 908, 1218 |
| SduI | GDGCHC | 1 cut(s) | 1017 |
| SfaNI | GCATC | 1 cut(s) | 1051 |
| SfcI | CTRYAG | 1 cut(s) | 324 |
| SinI | GGWCC | 1 cut(s) | 124 |
| Sse9I | AATT | 9 cut(s) | 301, 432, 513, 560, 606, 620, 761, 806, 865 |
| SseBI | AGGCCT | 1 cut(s) | 549 |
| SsiI | CCGC | 4 cut(s) | 229, 530, 541, 877 |
| SspI | AATATT | 1 cut(s) | 915 |
| SspMI | CTAG | 5 cut(s) | 59, 113, 269, 1053, 1173 |
| StuI | AGGCCT | 1 cut(s) | 549 |
| StyD4I | CCNGG | 5 cut(s) | 42, 366, 611, 906, 1216 |
| StyI | CCWWGG | 2 cut(s) | 287, 1098 |
| TaaI | ACNGT | 4 cut(s) | 73, 475, 824, 1299 |
| TaiI | ACGT | 2 cut(s) | 667, 1147 |
| TaqI | TCGA | 4 cut(s) | 262, 339, 670, 855 |
| TasI | AATT | 9 cut(s) | 301, 432, 513, 560, 606, 620, 761, 806, 865 |
| TauI | GCSGC | 1 cut(s) | 880 |
| TfiI | GAWTC | 5 cut(s) | 105, 926, 992, 1086, 1193 |
| Tru1I | TTAA | 7 cut(s) | 144, 246, 521, 605, 722, 917, 1250 |
| Tru9I | TTAA | 7 cut(s) | 144, 246, 521, 605, 722, 917, 1250 |
| TseFI | GTSAC | 1 cut(s) | 1125 |
| TseI | GCWGC | 1 cut(s) | 700 |
| Tsp45I | GTSAC | 1 cut(s) | 1125 |
| TspDTI | ATGAA | 2 cut(s) | 633, 1083 |
| TspGWI | ACGGA | 3 cut(s) | 266, 652, 1243 |
| Tth111I | GACNNNGTC | 1 cut(s) | 666 |
| VpaK11BI | GGWCC | 1 cut(s) | 124 |
| VspI | ATTAAT | 2 cut(s) | 605, 917 |
| XbaI | TCTAGA | 1 cut(s) | 58 |
| XspI | CTAG | 5 cut(s) | 59, 113, 269, 1053, 1173 |