Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 211 |
| AccBSI | CCGCTC | 1 cut(s) | 478 |
| AccI | GTMKAC | 1 cut(s) | 498 |
| AccII | CGCG | 1 cut(s) | 217 |
| AciI | CCGC | 7 cut(s) | 217, 414, 417, 476, 562, 583, 719 |
| AcoI | YGGCCR | 2 cut(s) | 169, 622 |
| AcsI | RAATTY | 1 cut(s) | 462 |
| AcuI | CTGAAG | 1 cut(s) | 315 |
| AfaI | GTAC | 2 cut(s) | 5, 328 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 239 |
| AflII | CTTAAG | 1 cut(s) | 104 |
| AgsI | TTSAA | 2 cut(s) | 166, 490 |
| AluBI | AGCT | 5 cut(s) | 11, 103, 175, 274, 365 |
| AluI | AGCT | 5 cut(s) | 11, 103, 175, 274, 365 |
| Alw21I | GWGCWC | 2 cut(s) | 27, 457 |
| Alw26I | GTCTC | 2 cut(s) | 329, 709 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 692 |
| AoxI | GGCC | 4 cut(s) | 169, 321, 368, 622 |
| ApeKI | GCWGC | 1 cut(s) | 175 |
| ApoI | RAATTY | 1 cut(s) | 462 |
| AspLEI | GCGC | 1 cut(s) | 232 |
| AspS9I | GGNCC | 2 cut(s) | 369, 411 |
| AsuC2I | CCSGG | 1 cut(s) | 621 |
| AsuHPI | GGTGA | 2 cut(s) | 429, 564 |
| AvaII | GGWCC | 1 cut(s) | 411 |
| BalI | TGGCCA | 1 cut(s) | 171 |
| Bbv12I | GWGCWC | 2 cut(s) | 27, 457 |
| BbvI | GCAGC | 1 cut(s) | 162 |
| BccI | CCATC | 5 cut(s) | 355, 431, 442, 566, 612 |
| BclI | TGATCA | 1 cut(s) | 61 |
| BcnI | CCSGG | 1 cut(s) | 621 |
| BcoDI | GTCTC | 2 cut(s) | 329, 709 |
| BfoI | RGCGCY | 1 cut(s) | 233 |
| BfrI | CTTAAG | 1 cut(s) | 104 |
| BisI | GCNGC | 2 cut(s) | 176, 417 |
| BlsI | GCNGC | 2 cut(s) | 177, 418 |
| Bme1390I | CCNGG | 1 cut(s) | 621 |
| Bme18I | GGWCC | 1 cut(s) | 411 |
| BmgT120I | GGNCC | 2 cut(s) | 369, 411 |
| BmiI | GGNNCC | 1 cut(s) | 371 |
| BmrFI | CCNGG | 1 cut(s) | 621 |
| BpuMI | CCSGG | 1 cut(s) | 621 |
| BsaI | GGTCTC | 1 cut(s) | 709 |
| BsaJI | CCNNGG | 2 cut(s) | 330, 448 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 101, 131 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 239 |
| BseDI | CCNNGG | 2 cut(s) | 330, 448 |
| BseGI | GGATG | 2 cut(s) | 558, 604 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 239 |
| BseMII | CTCAG | 1 cut(s) | 601 |
| BseRI | GAGGAG | 1 cut(s) | 465 |
| BseXI | GCAGC | 1 cut(s) | 162 |
| BsgI | GTGCAG | 1 cut(s) | 678 |
| Bsh1236I | CGCG | 1 cut(s) | 217 |
| Bsh1285I | CGRYCG | 1 cut(s) | 357 |
| BshFI | GGCC | 4 cut(s) | 171, 323, 370, 624 |
| BsiEI | CGRYCG | 1 cut(s) | 357 |
| BsiHKAI | GWGCWC | 2 cut(s) | 27, 457 |
| BsiSI | CCGG | 2 cut(s) | 409, 621 |
| BslFI | GGGAC | 1 cut(s) | 655 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 239 |
| BsmAI | GTCTC | 2 cut(s) | 329, 709 |
| BsmFI | GGGAC | 1 cut(s) | 655 |
| BsnI | GGCC | 4 cut(s) | 171, 323, 370, 624 |
| Bso31I | GGTCTC | 1 cut(s) | 709 |
| Bsp1286I | GDGCHC | 2 cut(s) | 27, 457 |
| Bsp143I | GATC | 5 cut(s) | 61, 185, 510, 529, 710 |
| BspACI | CCGC | 7 cut(s) | 217, 414, 417, 476, 562, 583, 719 |
| BspANI | GGCC | 4 cut(s) | 171, 323, 370, 624 |
| BspCNI | CTCAG | 1 cut(s) | 600 |
| BspFNI | CGCG | 1 cut(s) | 217 |
| BspLI | GGNNCC | 1 cut(s) | 371 |
| BspQI | GCTCTTC | 1 cut(s) | 264 |
| BspTI | CTTAAG | 1 cut(s) | 104 |
| BspTNI | GGTCTC | 1 cut(s) | 709 |
| BsrBI | CCGCTC | 1 cut(s) | 478 |
| BssECI | CCNNGG | 2 cut(s) | 330, 448 |
| BssMI | GATC | 5 cut(s) | 61, 185, 510, 529, 710 |
| BssT1I | CCWWGG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 5 cut(s) | 57, 117, 155, 340, 655 |
| Bst6I | CTCTTC | 1 cut(s) | 264 |
| BstAFI | CTTAAG | 1 cut(s) | 104 |
| BstC8I | GCNNGC | 4 cut(s) | 173, 228, 583, 626 |
| BstDEI | CTNAG | 2 cut(s) | 207, 587 |
| BstF5I | GGATG | 2 cut(s) | 558, 604 |
| BstFNI | CGCG | 1 cut(s) | 217 |
| BstH2I | RGCGCY | 1 cut(s) | 233 |
| BstHHI | GCGC | 1 cut(s) | 232 |
| BstKTI | GATC | 5 cut(s) | 64, 188, 513, 532, 713 |
| BstMAI | GTCTC | 2 cut(s) | 329, 709 |
| BstMBI | GATC | 5 cut(s) | 61, 185, 510, 529, 710 |
| BstMCI | CGRYCG | 1 cut(s) | 357 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 223, 271, 280 |
| BstNSI | RCATGY | 1 cut(s) | 127 |
| BstSCI | CCNGG | 1 cut(s) | 619 |
| BstUI | CGCG | 1 cut(s) | 217 |
| BstV1I | GCAGC | 1 cut(s) | 162 |
| BsuRI | GGCC | 4 cut(s) | 171, 323, 370, 624 |
| BtsCI | GGATG | 2 cut(s) | 558, 604 |
| BtsI | GCAGTG | 1 cut(s) | 690 |
| BtsIMutI | CAGTG | 1 cut(s) | 690 |
| Cac8I | GCNNGC | 4 cut(s) | 173, 228, 583, 626 |
| CaiI | CAGNNNCTG | 1 cut(s) | 692 |
| CfoI | GCGC | 1 cut(s) | 232 |
| Cfr13I | GGNCC | 2 cut(s) | 369, 411 |
| CpoI | CGGWCCG | 1 cut(s) | 411 |
| CseI | GACGC | 1 cut(s) | 289 |
| Csp6I | GTAC | 2 cut(s) | 4, 327 |
| CspI | CGGWCCG | 1 cut(s) | 411 |
| CviAII | CATG | 3 cut(s) | 65, 124, 382 |
| CviQI | GTAC | 2 cut(s) | 4, 327 |
| DdeI | CTNAG | 2 cut(s) | 207, 587 |
| DpnI | GATC | 5 cut(s) | 63, 187, 512, 531, 712 |
| DpnII | GATC | 5 cut(s) | 61, 185, 510, 529, 710 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 211 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 211 |
| EaeI | YGGCCR | 2 cut(s) | 169, 622 |
| Eam1104I | CTCTTC | 1 cut(s) | 264 |
| EarI | CTCTTC | 1 cut(s) | 264 |
| Eco130I | CCWWGG | 1 cut(s) | 330 |
| Eco31I | GGTCTC | 1 cut(s) | 709 |
| Eco47I | GGWCC | 1 cut(s) | 411 |
| Eco57I | CTGAAG | 1 cut(s) | 315 |
| EcoT14I | CCWWGG | 1 cut(s) | 330 |
| ErhI | CCWWGG | 1 cut(s) | 330 |
| FaeI | CATG | 3 cut(s) | 68, 127, 385 |
| FaiI | YATR | 9 cut(s) | 21, 66, 120, 125, 147, 224, 247, 383, 485 |
| FaqI | GGGAC | 1 cut(s) | 655 |
| FatI | CATG | 3 cut(s) | 64, 123, 381 |
| FauI | CCCGC | 1 cut(s) | 590 |
| FbaI | TGATCA | 1 cut(s) | 61 |
| FblI | GTMKAC | 1 cut(s) | 498 |
| Fnu4HI | GCNGC | 2 cut(s) | 176, 417 |
| FokI | GGATG | 2 cut(s) | 545, 591 |
| Fsp4HI | GCNGC | 2 cut(s) | 176, 417 |
| GlaI | GCGC | 1 cut(s) | 231 |
| GluI | GCNGC | 2 cut(s) | 176, 417 |
| HaeII | RGCGCY | 1 cut(s) | 233 |
| HaeIII | GGCC | 4 cut(s) | 171, 323, 370, 624 |
| HapII | CCGG | 2 cut(s) | 409, 621 |
| HgaI | GACGC | 1 cut(s) | 289 |
| HhaI | GCGC | 1 cut(s) | 232 |
| Hin1II | CATG | 3 cut(s) | 68, 127, 385 |
| Hin6I | GCGC | 1 cut(s) | 230 |
| HinP1I | GCGC | 1 cut(s) | 230 |
| HindIII | AAGCTT | 2 cut(s) | 101, 363 |
| HpaII | CCGG | 2 cut(s) | 409, 621 |
| HphI | GGTGA | 2 cut(s) | 429, 564 |
| Hpy166II | GTNNAC | 3 cut(s) | 53, 151, 499 |
| Hpy188I | TCNGA | 6 cut(s) | 204, 394, 529, 534, 590, 710 |
| Hpy188III | TCNNGA | 1 cut(s) | 714 |
| Hpy8I | GTNNAC | 3 cut(s) | 53, 151, 499 |
| Hpy99I | CGWCG | 2 cut(s) | 283, 355 |
| HpyAV | CCTTC | 2 cut(s) | 301, 673 |
| HpyCH4III | ACNGT | 5 cut(s) | 57, 117, 155, 340, 655 |
| HpyCH4V | TGCA | 4 cut(s) | 178, 226, 659, 695 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 223, 271, 280 |
| HpyF3I | CTNAG | 2 cut(s) | 207, 587 |
| Hsp92II | CATG | 3 cut(s) | 68, 127, 385 |
| HspAI | GCGC | 1 cut(s) | 230 |
| Ksp22I | TGATCA | 1 cut(s) | 61 |
| Kzo9I | GATC | 5 cut(s) | 61, 185, 510, 529, 710 |
| LguI | GCTCTTC | 1 cut(s) | 264 |
| LmnI | GCTCC | 2 cut(s) | 452, 483 |
| Lsp1109I | GCAGC | 1 cut(s) | 162 |
| MalI | GATC | 5 cut(s) | 63, 187, 512, 531, 712 |
| MbiI | CCGCTC | 1 cut(s) | 478 |
| MboI | GATC | 5 cut(s) | 61, 185, 510, 529, 710 |
| MboII | GAAGA | 1 cut(s) | 281 |
| MhlI | GDGCHC | 2 cut(s) | 27, 457 |
| MlsI | TGGCCA | 1 cut(s) | 171 |
| MluCI | AATT | 2 cut(s) | 76, 462 |
| MluNI | TGGCCA | 1 cut(s) | 171 |
| MmeI | TCCRAC | 3 cut(s) | 227, 417, 496 |
| MnlI | CCTC | 6 cut(s) | 42, 88, 400, 443, 596, 683 |
| Mox20I | TGGCCA | 1 cut(s) | 171 |
| MscI | TGGCCA | 1 cut(s) | 171 |
| MseI | TTAA | 1 cut(s) | 105 |
| Msp20I | TGGCCA | 1 cut(s) | 171 |
| MspA1I | CMGCKG | 1 cut(s) | 175 |
| MspCI | CTTAAG | 1 cut(s) | 104 |
| MspI | CCGG | 2 cut(s) | 409, 621 |
| MspR9I | CCNGG | 1 cut(s) | 621 |
| MvnI | CGCG | 1 cut(s) | 217 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 223, 271, 280 |
| NciI | CCSGG | 1 cut(s) | 621 |
| NdeII | GATC | 5 cut(s) | 61, 185, 510, 529, 710 |
| NlaIII | CATG | 3 cut(s) | 68, 127, 385 |
| NlaIV | GGNNCC | 1 cut(s) | 371 |
| NspI | RCATGY | 1 cut(s) | 127 |
| PciSI | GCTCTTC | 1 cut(s) | 264 |
| PkrI | GCNGC | 2 cut(s) | 177, 418 |
| PspN4I | GGNNCC | 1 cut(s) | 371 |
| PspPI | GGNCC | 2 cut(s) | 369, 411 |
| PstNI | CAGNNNCTG | 1 cut(s) | 692 |
| PvuII | CAGCTG | 1 cut(s) | 175 |
| RsaI | GTAC | 2 cut(s) | 5, 328 |
| RsaNI | GTAC | 2 cut(s) | 4, 327 |
| Rsr2I | CGGWCCG | 1 cut(s) | 411 |
| RsrII | CGGWCCG | 1 cut(s) | 411 |
| SapI | GCTCTTC | 1 cut(s) | 264 |
| SaqAI | TTAA | 1 cut(s) | 105 |
| SatI | GCNGC | 2 cut(s) | 176, 417 |
| Sau3AI | GATC | 5 cut(s) | 61, 185, 510, 529, 710 |
| Sau96I | GGNCC | 2 cut(s) | 369, 411 |
| ScrFI | CCNGG | 1 cut(s) | 621 |
| SduI | GDGCHC | 2 cut(s) | 27, 457 |
| SinI | GGWCC | 1 cut(s) | 411 |
| SmlI | CTYRAG | 1 cut(s) | 104 |
| SmoI | CTYRAG | 1 cut(s) | 104 |
| Sse9I | AATT | 2 cut(s) | 76, 462 |
| SsiI | CCGC | 7 cut(s) | 217, 414, 417, 476, 562, 583, 719 |
| StyD4I | CCNGG | 1 cut(s) | 619 |
| StyI | CCWWGG | 1 cut(s) | 330 |
| TaaI | ACNGT | 5 cut(s) | 57, 117, 155, 340, 655 |
| TaqI | TCGA | 3 cut(s) | 350, 378, 713 |
| TaqII | GACCGA | 2 cut(s) | 371, 462 |
| TasI | AATT | 2 cut(s) | 76, 462 |
| TauI | GCSGC | 1 cut(s) | 419 |
| Tru1I | TTAA | 1 cut(s) | 105 |
| Tru9I | TTAA | 1 cut(s) | 105 |
| TscAI | CASTG | 1 cut(s) | 697 |
| TseI | GCWGC | 1 cut(s) | 175 |
| TspRI | CASTG | 1 cut(s) | 697 |
| Vha464I | CTTAAG | 1 cut(s) | 104 |
| VpaK11BI | GGWCC | 1 cut(s) | 411 |
| XapI | RAATTY | 1 cut(s) | 462 |
| XceI | RCATGY | 1 cut(s) | 127 |
| XmiI | GTMKAC | 1 cut(s) | 498 |