Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 416 |
| AciI | CCGC | 3 cut(s) | 178, 267, 586 |
| AclWI | GGATC | 6 cut(s) | 14, 27, 106, 179, 257, 577 |
| AcoI | YGGCCR | 2 cut(s) | 36, 343 |
| AcsI | RAATTY | 1 cut(s) | 474 |
| AcyI | GRCGYC | 2 cut(s) | 124, 245 |
| AfaI | GTAC | 1 cut(s) | 430 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 89, 184, 386, 462 |
| AflIII | ACRYGT | 1 cut(s) | 431 |
| AgsI | TTSAA | 3 cut(s) | 44, 199, 398 |
| AjiI | CACGTC | 1 cut(s) | 10 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 497, 529 |
| Alw26I | GTCTC | 1 cut(s) | 353 |
| AlwI | GGATC | 6 cut(s) | 14, 27, 106, 179, 257, 577 |
| AoxI | GGCC | 2 cut(s) | 36, 343 |
| ApeKI | GCWGC | 1 cut(s) | 232 |
| ApoI | RAATTY | 1 cut(s) | 474 |
| AspLEI | GCGC | 1 cut(s) | 416 |
| AspS9I | GGNCC | 2 cut(s) | 80, 369 |
| AsuC2I | CCSGG | 1 cut(s) | 211 |
| AvaII | GGWCC | 2 cut(s) | 80, 369 |
| BalI | TGGCCA | 1 cut(s) | 38 |
| BamHI | GGATCC | 1 cut(s) | 19 |
| BbsI | GAAGAC | 1 cut(s) | 408 |
| BbvI | GCAGC | 1 cut(s) | 219 |
| BccI | CCATC | 2 cut(s) | 250, 281 |
| BceAI | ACGGC | 1 cut(s) | 517 |
| BcnI | CCSGG | 1 cut(s) | 211 |
| BcoDI | GTCTC | 1 cut(s) | 353 |
| BfaI | CTAG | 1 cut(s) | 500 |
| BisI | GCNGC | 1 cut(s) | 233 |
| BlsI | GCNGC | 1 cut(s) | 234 |
| Bme1390I | CCNGG | 1 cut(s) | 211 |
| Bme18I | GGWCC | 2 cut(s) | 80, 369 |
| BmgBI | CACGTC | 1 cut(s) | 10 |
| BmgT120I | GGNCC | 2 cut(s) | 80, 369 |
| BmiI | GGNNCC | 2 cut(s) | 21, 370 |
| BmrFI | CCNGG | 1 cut(s) | 211 |
| BmsI | GCATC | 1 cut(s) | 322 |
| BpiI | GAAGAC | 1 cut(s) | 408 |
| BpuMI | CCSGG | 1 cut(s) | 211 |
| BsaAI | YACGTR | 1 cut(s) | 432 |
| BsaHI | GRCGYC | 2 cut(s) | 124, 245 |
| BsaJI | CCNNGG | 1 cut(s) | 209 |
| BsaWI | WCCGGW | 2 cut(s) | 379, 510 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 89, 184, 386, 462 |
| Bse118I | RCCGGY | 1 cut(s) | 320 |
| BseDI | CCNNGG | 1 cut(s) | 209 |
| BseGI | GGATG | 2 cut(s) | 261, 273 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 89, 184, 386, 462 |
| BseXI | GCAGC | 1 cut(s) | 219 |
| Bsh1236I | CGCG | 1 cut(s) | 416 |
| Bsh1285I | CGRYCG | 2 cut(s) | 178, 185 |
| BshFI | GGCC | 2 cut(s) | 38, 345 |
| BsiEI | CGRYCG | 2 cut(s) | 178, 185 |
| BsiSI | CCGG | 4 cut(s) | 211, 321, 380, 511 |
| BslFI | GGGAC | 1 cut(s) | 382 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 89, 184, 386, 462 |
| BsmAI | GTCTC | 1 cut(s) | 353 |
| BsmFI | GGGAC | 1 cut(s) | 382 |
| BsmI | GAATGC | 2 cut(s) | 293, 324 |
| BsnI | GGCC | 2 cut(s) | 38, 345 |
| Bsp143I | GATC | 7 cut(s) | 19, 98, 149, 171, 182, 262, 582 |
| BspACI | CCGC | 3 cut(s) | 178, 267, 586 |
| BspANI | GGCC | 2 cut(s) | 38, 345 |
| BspFNI | CGCG | 1 cut(s) | 416 |
| BspLI | GGNNCC | 2 cut(s) | 21, 370 |
| BspPI | GGATC | 6 cut(s) | 14, 27, 106, 179, 257, 577 |
| BsrFI | RCCGGY | 1 cut(s) | 320 |
| BssAI | RCCGGY | 1 cut(s) | 320 |
| BssECI | CCNNGG | 1 cut(s) | 209 |
| BssMI | GATC | 7 cut(s) | 19, 98, 149, 171, 182, 262, 582 |
| BssNI | GRCGYC | 2 cut(s) | 124, 245 |
| BstACI | GRCGYC | 2 cut(s) | 124, 245 |
| BstBAI | YACGTR | 1 cut(s) | 432 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 87 |
| BstF5I | GGATG | 2 cut(s) | 261, 273 |
| BstFNI | CGCG | 1 cut(s) | 416 |
| BstHHI | GCGC | 1 cut(s) | 416 |
| BstKTI | GATC | 7 cut(s) | 22, 101, 152, 174, 185, 265, 585 |
| BstMAI | GTCTC | 1 cut(s) | 353 |
| BstMBI | GATC | 7 cut(s) | 19, 98, 149, 171, 182, 262, 582 |
| BstMCI | CGRYCG | 2 cut(s) | 178, 185 |
| BstSCI | CCNGG | 1 cut(s) | 209 |
| BstUI | CGCG | 1 cut(s) | 416 |
| BstV1I | GCAGC | 1 cut(s) | 219 |
| BstV2I | GAAGAC | 1 cut(s) | 408 |
| BstX2I | RGATCY | 1 cut(s) | 19 |
| BstYI | RGATCY | 1 cut(s) | 19 |
| BsuRI | GGCC | 2 cut(s) | 38, 345 |
| BtrI | CACGTC | 1 cut(s) | 10 |
| BtsCI | GGATG | 2 cut(s) | 261, 273 |
| CfoI | GCGC | 1 cut(s) | 416 |
| Cfr10I | RCCGGY | 1 cut(s) | 320 |
| Cfr13I | GGNCC | 2 cut(s) | 80, 369 |
| CseI | GACGC | 2 cut(s) | 113, 234 |
| Csp6I | GTAC | 1 cut(s) | 429 |
| CviAII | CATG | 1 cut(s) | 566 |
| CviJI | RGCY | 5 cut(s) | 38, 113, 208, 345, 439 |
| CviKI_1 | RGCY | 5 cut(s) | 38, 113, 208, 345, 439 |
| CviQI | GTAC | 1 cut(s) | 429 |
| DpnI | GATC | 7 cut(s) | 21, 100, 151, 173, 184, 264, 584 |
| DpnII | GATC | 7 cut(s) | 19, 98, 149, 171, 182, 262, 582 |
| EaeI | YGGCCR | 2 cut(s) | 36, 343 |
| Eco47I | GGWCC | 2 cut(s) | 80, 369 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 87 |
| EcoO109I | RGGNCCY | 1 cut(s) | 369 |
| FaeI | CATG | 1 cut(s) | 569 |
| FaiI | YATR | 7 cut(s) | 96, 154, 159, 354, 522, 567, 601 |
| FaqI | GGGAC | 1 cut(s) | 382 |
| FatI | CATG | 1 cut(s) | 565 |
| FauI | CCCGC | 1 cut(s) | 274 |
| Fnu4HI | GCNGC | 1 cut(s) | 233 |
| FokI | GGATG | 2 cut(s) | 260, 268 |
| Fsp4HI | GCNGC | 1 cut(s) | 233 |
| FspBI | CTAG | 1 cut(s) | 500 |
| GlaI | GCGC | 1 cut(s) | 415 |
| GluI | GCNGC | 1 cut(s) | 233 |
| HaeIII | GGCC | 2 cut(s) | 38, 345 |
| HapII | CCGG | 4 cut(s) | 211, 321, 380, 511 |
| HgaI | GACGC | 2 cut(s) | 113, 234 |
| HhaI | GCGC | 1 cut(s) | 416 |
| Hin1I | GRCGYC | 2 cut(s) | 124, 245 |
| Hin1II | CATG | 1 cut(s) | 569 |
| Hin6I | GCGC | 1 cut(s) | 414 |
| HinP1I | GCGC | 1 cut(s) | 414 |
| HinfI | GANTC | 4 cut(s) | 145, 284, 300, 305 |
| HpaII | CCGG | 4 cut(s) | 211, 321, 380, 511 |
| Hpy166II | GTNNAC | 1 cut(s) | 429 |
| Hpy188I | TCNGA | 3 cut(s) | 24, 187, 299 |
| Hpy188III | TCNNGA | 2 cut(s) | 44, 70 |
| Hpy8I | GTNNAC | 1 cut(s) | 429 |
| HpyCH4IV | ACGT | 3 cut(s) | 9, 350, 431 |
| HpySE526I | ACGT | 3 cut(s) | 9, 350, 431 |
| Hsp92I | GRCGYC | 2 cut(s) | 124, 245 |
| Hsp92II | CATG | 1 cut(s) | 569 |
| HspAI | GCGC | 1 cut(s) | 414 |
| Kzo9I | GATC | 7 cut(s) | 19, 98, 149, 171, 182, 262, 582 |
| LpnPI | CCDG | 6 cut(s) | 83, 99, 224, 334, 393, 524 |
| Lsp1109I | GCAGC | 1 cut(s) | 219 |
| LweI | GCATC | 1 cut(s) | 322 |
| MaeI | CTAG | 1 cut(s) | 500 |
| MaeII | ACGT | 3 cut(s) | 9, 350, 431 |
| MalI | GATC | 7 cut(s) | 21, 100, 151, 173, 184, 264, 584 |
| MboI | GATC | 7 cut(s) | 19, 98, 149, 171, 182, 262, 582 |
| MboII | GAAGA | 5 cut(s) | 62, 65, 123, 410, 413 |
| MflI | RGATCY | 1 cut(s) | 19 |
| MlsI | TGGCCA | 1 cut(s) | 38 |
| MluCI | AATT | 1 cut(s) | 474 |
| MluNI | TGGCCA | 1 cut(s) | 38 |
| MlyI | GAGTC | 2 cut(s) | 139, 314 |
| MmeI | TCCRAC | 2 cut(s) | 47, 495 |
| MnlI | CCTC | 8 cut(s) | 83, 114, 303, 383, 437, 456, 554, 588 |
| Mox20I | TGGCCA | 1 cut(s) | 38 |
| MscI | TGGCCA | 1 cut(s) | 38 |
| MseI | TTAA | 3 cut(s) | 330, 471, 560 |
| Msp20I | TGGCCA | 1 cut(s) | 38 |
| MspI | CCGG | 4 cut(s) | 211, 321, 380, 511 |
| MspR9I | CCNGG | 1 cut(s) | 211 |
| Mva1269I | GAATGC | 2 cut(s) | 293, 324 |
| MvnI | CGCG | 1 cut(s) | 416 |
| NciI | CCSGG | 1 cut(s) | 211 |
| NdeII | GATC | 7 cut(s) | 19, 98, 149, 171, 182, 262, 582 |
| NlaIII | CATG | 1 cut(s) | 569 |
| NlaIV | GGNNCC | 2 cut(s) | 21, 370 |
| PctI | GAATGC | 2 cut(s) | 293, 324 |
| PfeI | GAWTC | 2 cut(s) | 284, 300 |
| PkrI | GCNGC | 1 cut(s) | 234 |
| Ple19I | CGATCG | 1 cut(s) | 185 |
| PleI | GAGTC | 2 cut(s) | 139, 313 |
| PpsI | GAGTC | 2 cut(s) | 139, 313 |
| Ppu21I | YACGTR | 1 cut(s) | 432 |
| PpuMI | RGGWCCY | 1 cut(s) | 369 |
| Psp5II | RGGWCCY | 1 cut(s) | 369 |
| PspN4I | GGNNCC | 2 cut(s) | 21, 370 |
| PspPI | GGNCC | 2 cut(s) | 80, 369 |
| PspPPI | RGGWCCY | 1 cut(s) | 369 |
| PsuI | RGATCY | 1 cut(s) | 19 |
| PvuI | CGATCG | 1 cut(s) | 185 |
| RsaI | GTAC | 1 cut(s) | 430 |
| RsaNI | GTAC | 1 cut(s) | 429 |
| SaqAI | TTAA | 3 cut(s) | 330, 471, 560 |
| SatI | GCNGC | 1 cut(s) | 233 |
| Sau3AI | GATC | 7 cut(s) | 19, 98, 149, 171, 182, 262, 582 |
| Sau96I | GGNCC | 2 cut(s) | 80, 369 |
| SchI | GAGTC | 2 cut(s) | 139, 314 |
| ScrFI | CCNGG | 1 cut(s) | 211 |
| SfaNI | GCATC | 1 cut(s) | 322 |
| SinI | GGWCC | 2 cut(s) | 80, 369 |
| Sse9I | AATT | 1 cut(s) | 474 |
| SsiI | CCGC | 3 cut(s) | 178, 267, 586 |
| SspMI | CTAG | 1 cut(s) | 500 |
| StyD4I | CCNGG | 1 cut(s) | 209 |
| TaiI | ACGT | 3 cut(s) | 12, 353, 434 |
| TaqI | TCGA | 6 cut(s) | 148, 174, 219, 303, 308, 575 |
| TasI | AATT | 1 cut(s) | 474 |
| TfiI | GAWTC | 2 cut(s) | 284, 300 |
| Tru1I | TTAA | 3 cut(s) | 330, 471, 560 |
| Tru9I | TTAA | 3 cut(s) | 330, 471, 560 |
| TseI | GCWGC | 1 cut(s) | 232 |
| TspDTI | ATGAA | 3 cut(s) | 63, 468, 537 |
| TspGWI | ACGGA | 3 cut(s) | 93, 414, 420 |
| VpaK11BI | GGWCC | 2 cut(s) | 80, 369 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 87 |
| XapI | RAATTY | 1 cut(s) | 474 |
| XspI | CTAG | 1 cut(s) | 500 |