Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 245 |
| AccBSI | CCGCTC | 2 cut(s) | 152, 263 |
| AciI | CCGC | 5 cut(s) | 38, 152, 263, 405, 422 |
| AclWI | GGATC | 4 cut(s) | 122, 135, 297, 511 |
| AcoI | YGGCCR | 1 cut(s) | 39 |
| AcsI | RAATTY | 2 cut(s) | 48, 355 |
| AcuI | CTGAAG | 1 cut(s) | 246 |
| AfaI | GTAC | 2 cut(s) | 110, 472 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 180, 371, 527 |
| AgsI | TTSAA | 2 cut(s) | 180, 554 |
| AjnI | CCWGG | 1 cut(s) | 156 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 391, 423 |
| AluBI | AGCT | 3 cut(s) | 187, 448, 547 |
| AluI | AGCT | 3 cut(s) | 187, 448, 547 |
| Alw21I | GWGCWC | 1 cut(s) | 189 |
| Alw26I | GTCTC | 1 cut(s) | 320 |
| AlwI | GGATC | 4 cut(s) | 122, 135, 297, 511 |
| Ama87I | CYCGRG | 2 cut(s) | 190, 520 |
| AoxI | GGCC | 1 cut(s) | 39 |
| ApoI | RAATTY | 2 cut(s) | 48, 355 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 51 |
| AspS9I | GGNCC | 1 cut(s) | 154 |
| AsuC2I | CCSGG | 2 cut(s) | 521, 522 |
| AsuHPI | GGTGA | 1 cut(s) | 75 |
| AsuII | TTCGAA | 1 cut(s) | 397 |
| AvaI | CYCGRG | 2 cut(s) | 190, 520 |
| AvaII | GGWCC | 1 cut(s) | 154 |
| BaeGI | GKGCMC | 1 cut(s) | 248 |
| BamHI | GGATCC | 1 cut(s) | 127 |
| BanI | GGYRCC | 1 cut(s) | 245 |
| BanII | GRGCYC | 2 cut(s) | 189, 269 |
| Bbv12I | GWGCWC | 1 cut(s) | 189 |
| BccI | CCATC | 1 cut(s) | 285 |
| BceAI | ACGGC | 1 cut(s) | 261 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 235, 269, 516, 550 |
| BciT130I | CCWGG | 1 cut(s) | 158 |
| BcnI | CCSGG | 2 cut(s) | 521, 522 |
| BcoDI | GTCTC | 1 cut(s) | 320 |
| BfaI | CTAG | 2 cut(s) | 132, 241 |
| BfmI | CTRYAG | 1 cut(s) | 321 |
| BisI | GCNGC | 1 cut(s) | 39 |
| BlsI | GCNGC | 1 cut(s) | 40 |
| BmcAI | AGTACT | 1 cut(s) | 110 |
| Bme1390I | CCNGG | 3 cut(s) | 158, 521, 522 |
| Bme18I | GGWCC | 1 cut(s) | 154 |
| BmeT110I | CYCGRG | 2 cut(s) | 190, 520 |
| BmgT120I | GGNCC | 1 cut(s) | 154 |
| BmiI | GGNNCC | 2 cut(s) | 129, 247 |
| BmrFI | CCNGG | 3 cut(s) | 158, 521, 522 |
| BmrI | ACTGGG | 1 cut(s) | 323 |
| BmsI | GCATC | 3 cut(s) | 125, 225, 392 |
| BmuI | ACTGGG | 1 cut(s) | 323 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 559, 591 |
| Bpu14I | TTCGAA | 1 cut(s) | 397 |
| BpuMI | CCSGG | 2 cut(s) | 521, 522 |
| Bsa29I | ATCGAT | 1 cut(s) | 515 |
| BsaBI | GATNNNNATC | 1 cut(s) | 139 |
| BsaJI | CCNNGG | 5 cut(s) | 249, 277, 452, 520, 521 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 180, 371, 527 |
| Bse1I | ACTGG | 2 cut(s) | 329, 431 |
| Bse8I | GATNNNNATC | 1 cut(s) | 139 |
| BseBI | CCWGG | 1 cut(s) | 158 |
| BseCI | ATCGAT | 1 cut(s) | 515 |
| BseDI | CCNNGG | 5 cut(s) | 249, 277, 452, 520, 521 |
| BseGI | GGATG | 1 cut(s) | 380 |
| BseJI | GATNNNNATC | 1 cut(s) | 139 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 180, 371, 527 |
| BseMII | CTCAG | 2 cut(s) | 33, 356 |
| BseNI | ACTGG | 2 cut(s) | 329, 431 |
| BseSI | GKGCMC | 1 cut(s) | 248 |
| BshFI | GGCC | 1 cut(s) | 41 |
| BshNI | GGYRCC | 1 cut(s) | 245 |
| BshVI | ATCGAT | 1 cut(s) | 515 |
| BsiHKAI | GWGCWC | 1 cut(s) | 189 |
| BsiHKCI | CYCGRG | 2 cut(s) | 190, 520 |
| BsiSI | CCGG | 1 cut(s) | 521 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 180, 371, 527 |
| BsmAI | GTCTC | 1 cut(s) | 320 |
| BsnI | GGCC | 1 cut(s) | 41 |
| BsoBI | CYCGRG | 2 cut(s) | 190, 520 |
| Bsp119I | TTCGAA | 1 cut(s) | 397 |
| Bsp1286I | GDGCHC | 3 cut(s) | 189, 248, 269 |
| Bsp143I | GATC | 4 cut(s) | 127, 221, 302, 516 |
| Bsp19I | CCATGG | 1 cut(s) | 249 |
| BspACI | CCGC | 5 cut(s) | 38, 152, 263, 405, 422 |
| BspANI | GGCC | 1 cut(s) | 41 |
| BspCNI | CTCAG | 2 cut(s) | 32, 355 |
| BspDI | ATCGAT | 1 cut(s) | 515 |
| BspLI | GGNNCC | 2 cut(s) | 129, 247 |
| BspMAI | CTGCAG | 1 cut(s) | 325 |
| BspPI | GGATC | 4 cut(s) | 122, 135, 297, 511 |
| BspT104I | TTCGAA | 1 cut(s) | 397 |
| BspT107I | GGYRCC | 1 cut(s) | 245 |
| BsrBI | CCGCTC | 2 cut(s) | 152, 263 |
| BsrI | ACTGG | 2 cut(s) | 329, 431 |
| BssECI | CCNNGG | 5 cut(s) | 249, 277, 452, 520, 521 |
| BssMI | GATC | 4 cut(s) | 127, 221, 302, 516 |
| BssT1I | CCWWGG | 2 cut(s) | 249, 452 |
| Bst2UI | CCWGG | 1 cut(s) | 158 |
| Bst6I | CTCTTC | 1 cut(s) | 18 |
| BstBI | TTCGAA | 1 cut(s) | 397 |
| BstC8I | GCNNGC | 1 cut(s) | 265 |
| BstDEI | CTNAG | 2 cut(s) | 19, 342 |
| BstDSI | CCRYGG | 2 cut(s) | 249, 277 |
| BstF5I | GGATG | 1 cut(s) | 380 |
| BstKTI | GATC | 4 cut(s) | 130, 224, 305, 519 |
| BstMAI | GTCTC | 1 cut(s) | 320 |
| BstMBI | GATC | 4 cut(s) | 127, 221, 302, 516 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 35, 273 |
| BstNI | CCWGG | 1 cut(s) | 158 |
| BstSCI | CCNGG | 3 cut(s) | 156, 519, 520 |
| BstSFI | CTRYAG | 1 cut(s) | 321 |
| BstSLI | GKGCMC | 1 cut(s) | 248 |
| BstX2I | RGATCY | 1 cut(s) | 127 |
| BstYI | RGATCY | 1 cut(s) | 127 |
| Bsu15I | ATCGAT | 1 cut(s) | 515 |
| BsuRI | GGCC | 1 cut(s) | 41 |
| BsuTUI | ATCGAT | 1 cut(s) | 515 |
| BtgI | CCRYGG | 2 cut(s) | 249, 277 |
| BtsCI | GGATG | 1 cut(s) | 380 |
| BtsIMutI | CAGTG | 1 cut(s) | 424 |
| Cac8I | GCNNGC | 1 cut(s) | 265 |
| Cfr13I | GGNCC | 1 cut(s) | 154 |
| Cfr9I | CCCGGG | 1 cut(s) | 520 |
| ClaI | ATCGAT | 1 cut(s) | 515 |
| Csp6I | GTAC | 2 cut(s) | 109, 471 |
| CviAII | CATG | 1 cut(s) | 250 |
| CviQI | GTAC | 2 cut(s) | 109, 471 |
| DdeI | CTNAG | 2 cut(s) | 19, 342 |
| DpnI | GATC | 4 cut(s) | 129, 223, 304, 518 |
| DpnII | GATC | 4 cut(s) | 127, 221, 302, 516 |
| EaeI | YGGCCR | 1 cut(s) | 39 |
| Eam1104I | CTCTTC | 1 cut(s) | 18 |
| EarI | CTCTTC | 1 cut(s) | 18 |
| Ecl136II | GAGCTC | 1 cut(s) | 187 |
| Eco130I | CCWWGG | 2 cut(s) | 249, 452 |
| Eco24I | GRGCYC | 2 cut(s) | 189, 269 |
| Eco47I | GGWCC | 1 cut(s) | 154 |
| Eco53kI | GAGCTC | 1 cut(s) | 187 |
| Eco57I | CTGAAG | 1 cut(s) | 246 |
| Eco88I | CYCGRG | 2 cut(s) | 190, 520 |
| EcoICRI | GAGCTC | 1 cut(s) | 187 |
| EcoRI | GAATTC | 1 cut(s) | 355 |
| EcoRII | CCWGG | 1 cut(s) | 156 |
| EcoT14I | CCWWGG | 2 cut(s) | 249, 452 |
| EcoT22I | ATGCAT | 1 cut(s) | 218 |
| EcoT38I | GRGCYC | 2 cut(s) | 189, 269 |
| ErhI | CCWWGG | 2 cut(s) | 249, 452 |
| FaeI | CATG | 1 cut(s) | 253 |
| FatI | CATG | 1 cut(s) | 249 |
| FauI | CCCGC | 1 cut(s) | 256 |
| FauNDI | CATATG | 1 cut(s) | 212 |
| Fnu4HI | GCNGC | 1 cut(s) | 39 |
| FokI | GGATG | 1 cut(s) | 387 |
| FriOI | GRGCYC | 2 cut(s) | 189, 269 |
| Fsp4HI | GCNGC | 1 cut(s) | 39 |
| FspBI | CTAG | 2 cut(s) | 132, 241 |
| GluI | GCNGC | 1 cut(s) | 39 |
| HaeIII | GGCC | 1 cut(s) | 41 |
| HapII | CCGG | 1 cut(s) | 521 |
| Hin1II | CATG | 1 cut(s) | 253 |
| HindIII | AAGCTT | 1 cut(s) | 545 |
| HinfI | GANTC | 3 cut(s) | 96, 313, 394 |
| HpaII | CCGG | 1 cut(s) | 521 |
| HphI | GGTGA | 1 cut(s) | 75 |
| Hpy188I | TCNGA | 5 cut(s) | 22, 149, 221, 226, 345 |
| HpyAV | CCTTC | 1 cut(s) | 174 |
| HpyCH4V | TGCA | 4 cut(s) | 138, 210, 216, 323 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 35, 273 |
| HpyF3I | CTNAG | 2 cut(s) | 19, 342 |
| Hsp92II | CATG | 1 cut(s) | 253 |
| Kzo9I | GATC | 4 cut(s) | 127, 221, 302, 516 |
| LmnI | GCTCC | 1 cut(s) | 184 |
| LpnPI | CCDG | 9 cut(s) | 143, 170, 323, 333, 342, 370, 412, 513, 534 |
| LweI | GCATC | 3 cut(s) | 125, 225, 392 |
| MaeI | CTAG | 2 cut(s) | 132, 241 |
| MaeIII | GTNAC | 3 cut(s) | 236, 284, 539 |
| MalI | GATC | 4 cut(s) | 129, 223, 304, 518 |
| MbiI | CCGCTC | 2 cut(s) | 152, 263 |
| MboI | GATC | 4 cut(s) | 127, 221, 302, 516 |
| MboII | GAAGA | 4 cut(s) | 35, 390, 411, 456 |
| MfeI | CAATTG | 1 cut(s) | 175 |
| MflI | RGATCY | 1 cut(s) | 127 |
| MhlI | GDGCHC | 3 cut(s) | 189, 248, 269 |
| MluCI | AATT | 7 cut(s) | 48, 66, 103, 175, 346, 355, 554 |
| MlyI | GAGTC | 2 cut(s) | 90, 322 |
| MnlI | CCTC | 6 cut(s) | 19, 24, 28, 375, 508, 585 |
| Mph1103I | ATGCAT | 1 cut(s) | 218 |
| MroXI | GAANNNNTTC | 1 cut(s) | 51 |
| MseI | TTAA | 2 cut(s) | 102, 599 |
| MspA1I | CMGCKG | 1 cut(s) | 38 |
| MspI | CCGG | 1 cut(s) | 521 |
| MspR9I | CCNGG | 3 cut(s) | 158, 521, 522 |
| MunI | CAATTG | 1 cut(s) | 175 |
| MvaI | CCWGG | 1 cut(s) | 158 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 35, 273 |
| NciI | CCSGG | 2 cut(s) | 521, 522 |
| NcoI | CCATGG | 1 cut(s) | 249 |
| NdeI | CATATG | 1 cut(s) | 212 |
| NdeII | GATC | 4 cut(s) | 127, 221, 302, 516 |
| NlaIII | CATG | 1 cut(s) | 253 |
| NlaIV | GGNNCC | 2 cut(s) | 129, 247 |
| NsiI | ATGCAT | 1 cut(s) | 218 |
| NspV | TTCGAA | 1 cut(s) | 397 |
| PdmI | GAANNNNTTC | 1 cut(s) | 51 |
| PfeI | GAWTC | 1 cut(s) | 394 |
| PkrI | GCNGC | 1 cut(s) | 40 |
| PleI | GAGTC | 2 cut(s) | 90, 321 |
| PpsI | GAGTC | 2 cut(s) | 90, 321 |
| Psp124BI | GAGCTC | 1 cut(s) | 189 |
| Psp6I | CCWGG | 1 cut(s) | 156 |
| PspGI | CCWGG | 1 cut(s) | 156 |
| PspN4I | GGNNCC | 2 cut(s) | 129, 247 |
| PspPI | GGNCC | 1 cut(s) | 154 |
| PstI | CTGCAG | 1 cut(s) | 325 |
| PsuI | RGATCY | 1 cut(s) | 127 |
| RsaI | GTAC | 2 cut(s) | 110, 472 |
| RsaNI | GTAC | 2 cut(s) | 109, 471 |
| SacI | GAGCTC | 1 cut(s) | 189 |
| SaqAI | TTAA | 2 cut(s) | 102, 599 |
| SatI | GCNGC | 1 cut(s) | 39 |
| Sau3AI | GATC | 4 cut(s) | 127, 221, 302, 516 |
| Sau96I | GGNCC | 1 cut(s) | 154 |
| ScaI | AGTACT | 1 cut(s) | 110 |
| SchI | GAGTC | 2 cut(s) | 90, 322 |
| ScrFI | CCNGG | 3 cut(s) | 158, 521, 522 |
| SduI | GDGCHC | 3 cut(s) | 189, 248, 269 |
| SetI | ASST | 6 cut(s) | 162, 189, 417, 450, 454, 549 |
| SfaNI | GCATC | 3 cut(s) | 125, 225, 392 |
| SfcI | CTRYAG | 1 cut(s) | 321 |
| SfuI | TTCGAA | 1 cut(s) | 397 |
| SinI | GGWCC | 1 cut(s) | 154 |
| SmaI | CCCGGG | 1 cut(s) | 522 |
| Sse9I | AATT | 7 cut(s) | 48, 66, 103, 175, 346, 355, 554 |
| SsiI | CCGC | 5 cut(s) | 38, 152, 263, 405, 422 |
| SspMI | CTAG | 2 cut(s) | 132, 241 |
| SstI | GAGCTC | 1 cut(s) | 189 |
| StyD4I | CCNGG | 3 cut(s) | 156, 519, 520 |
| StyI | CCWWGG | 2 cut(s) | 249, 452 |
| TaqI | TCGA | 4 cut(s) | 397, 467, 500, 515 |
| TasI | AATT | 7 cut(s) | 48, 66, 103, 175, 346, 355, 554 |
| TatI | WGTACW | 1 cut(s) | 108 |
| TauI | GCSGC | 1 cut(s) | 41 |
| TfiI | GAWTC | 1 cut(s) | 394 |
| Tru1I | TTAA | 2 cut(s) | 102, 599 |
| Tru9I | TTAA | 2 cut(s) | 102, 599 |
| TscAI | CASTG | 1 cut(s) | 431 |
| TspDTI | ATGAA | 1 cut(s) | 391 |
| TspGWI | ACGGA | 1 cut(s) | 133 |
| TspMI | CCCGGG | 1 cut(s) | 520 |
| TspRI | CASTG | 1 cut(s) | 431 |
| VpaK11BI | GGWCC | 1 cut(s) | 154 |
| XapI | RAATTY | 2 cut(s) | 48, 355 |
| XmaI | CCCGGG | 1 cut(s) | 520 |
| XmnI | GAANNNNTTC | 1 cut(s) | 51 |
| XspI | CTAG | 2 cut(s) | 132, 241 |
| ZrmI | AGTACT | 1 cut(s) | 110 |
| Zsp2I | ATGCAT | 1 cut(s) | 218 |