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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 550 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 182 |
| AciI | CCGC | 1 cut(s) | 128 |
| AclI | AACGTT | 1 cut(s) | 562 |
| AfaI | GTAC | 2 cut(s) | 483, 658 |
| AfeI | AGCGCT | 1 cut(s) | 141 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 182, 606 |
| AflIII | ACRYGT | 1 cut(s) | 216 |
| AgsI | TTSAA | 1 cut(s) | 559 |
| AjiI | CACGTC | 2 cut(s) | 265, 337 |
| AjnI | CCWGG | 2 cut(s) | 175, 649 |
| AluBI | AGCT | 5 cut(s) | 50, 70, 98, 311, 370 |
| AluI | AGCT | 5 cut(s) | 50, 70, 98, 311, 370 |
| Alw26I | GTCTC | 1 cut(s) | 576 |
| Aor51HI | AGCGCT | 1 cut(s) | 141 |
| AoxI | GGCC | 1 cut(s) | 80 |
| ApeKI | GCWGC | 2 cut(s) | 67, 142 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 180, 212 |
| AspLEI | GCGC | 1 cut(s) | 142 |
| AspS9I | GGNCC | 2 cut(s) | 188, 683 |
| AsuHPI | GGTGA | 4 cut(s) | 248, 284, 440, 627 |
| AvaII | GGWCC | 2 cut(s) | 188, 683 |
| BbvI | GCAGC | 2 cut(s) | 79, 129 |
| BccI | CCATC | 3 cut(s) | 152, 673, 705 |
| BciT130I | CCWGG | 2 cut(s) | 177, 651 |
| BcoDI | GTCTC | 1 cut(s) | 576 |
| BfaI | CTAG | 2 cut(s) | 78, 546 |
| BfoI | RGCGCY | 1 cut(s) | 143 |
| BisI | GCNGC | 2 cut(s) | 68, 143 |
| BlsI | GCNGC | 2 cut(s) | 69, 144 |
| Bme1390I | CCNGG | 2 cut(s) | 177, 651 |
| Bme18I | GGWCC | 2 cut(s) | 188, 683 |
| BmgBI | CACGTC | 2 cut(s) | 265, 337 |
| BmgT120I | GGNCC | 2 cut(s) | 188, 683 |
| BmiI | GGNNCC | 1 cut(s) | 684 |
| BmrFI | CCNGG | 2 cut(s) | 177, 651 |
| BmrI | ACTGGG | 1 cut(s) | 615 |
| BmuI | ACTGGG | 1 cut(s) | 615 |
| BoxI | GACNNNNGTC | 1 cut(s) | 252 |
| BpmI | CTGGAG | 1 cut(s) | 159 |
| Bpu10I | CCTNAGC | 1 cut(s) | 576 |
| BpuEI | CTTGAG | 1 cut(s) | 38 |
| BsaI | GGTCTC | 1 cut(s) | 576 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 182, 606 |
| Bse1I | ACTGG | 2 cut(s) | 336, 610 |
| BseBI | CCWGG | 2 cut(s) | 177, 651 |
| BseGI | GGATG | 1 cut(s) | 460 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 182, 606 |
| BseNI | ACTGG | 2 cut(s) | 336, 610 |
| BseXI | GCAGC | 2 cut(s) | 79, 129 |
| BshFI | GGCC | 1 cut(s) | 82 |
| BsiSI | CCGG | 1 cut(s) | 686 |
| BslFI | GGGAC | 2 cut(s) | 491, 654 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 182, 606 |
| BsmAI | GTCTC | 1 cut(s) | 576 |
| BsmFI | GGGAC | 2 cut(s) | 491, 654 |
| BsmI | GAATGC | 1 cut(s) | 130 |
| BsnI | GGCC | 1 cut(s) | 82 |
| Bso31I | GGTCTC | 1 cut(s) | 576 |
| BspACI | CCGC | 1 cut(s) | 128 |
| BspANI | GGCC | 1 cut(s) | 82 |
| BspLI | GGNNCC | 1 cut(s) | 684 |
| BspTNI | GGTCTC | 1 cut(s) | 576 |
| BsrI | ACTGG | 2 cut(s) | 336, 610 |
| Bst2UI | CCWGG | 2 cut(s) | 177, 651 |
| Bst4CI | ACNGT | 1 cut(s) | 631 |
| Bst6I | CTCTTC | 1 cut(s) | 638 |
| BstC8I | GCNNGC | 1 cut(s) | 359 |
| BstDEI | CTNAG | 4 cut(s) | 44, 371, 576, 639 |
| BstF5I | GGATG | 1 cut(s) | 460 |
| BstH2I | RGCGCY | 1 cut(s) | 143 |
| BstHHI | GCGC | 1 cut(s) | 142 |
| BstMAI | GTCTC | 1 cut(s) | 576 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 88, 367 |
| BstNI | CCWGG | 2 cut(s) | 177, 651 |
| BstNSI | RCATGY | 2 cut(s) | 412, 440 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 252 |
| BstSCI | CCNGG | 2 cut(s) | 175, 649 |
| BstV1I | GCAGC | 2 cut(s) | 79, 129 |
| BsuRI | GGCC | 1 cut(s) | 82 |
| BtrI | CACGTC | 2 cut(s) | 265, 337 |
| BtsCI | GGATG | 1 cut(s) | 460 |
| Cac8I | GCNNGC | 1 cut(s) | 359 |
| CfoI | GCGC | 1 cut(s) | 142 |
| Cfr13I | GGNCC | 2 cut(s) | 188, 683 |
| Csp6I | GTAC | 2 cut(s) | 482, 657 |
| CviJI | RGCY | 9 cut(s) | 50, 70, 82, 98, 311, 357, 370, 417, 689 |
| CviKI_1 | RGCY | 9 cut(s) | 50, 70, 82, 98, 311, 357, 370, 417, 689 |
| CviQI | GTAC | 2 cut(s) | 482, 657 |
| DdeI | CTNAG | 4 cut(s) | 44, 371, 576, 639 |
| DraI | TTTAAA | 1 cut(s) | 228 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 550 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 550 |
| Eam1104I | CTCTTC | 1 cut(s) | 638 |
| EarI | CTCTTC | 1 cut(s) | 638 |
| Eco147I | AGGCCT | 1 cut(s) | 82 |
| Eco31I | GGTCTC | 1 cut(s) | 576 |
| Eco32I | GATATC | 1 cut(s) | 61 |
| Eco47I | GGWCC | 2 cut(s) | 188, 683 |
| Eco47III | AGCGCT | 1 cut(s) | 141 |
| EcoRII | CCWGG | 2 cut(s) | 175, 649 |
| EcoRV | GATATC | 1 cut(s) | 61 |
| EcoT22I | ATGCAT | 2 cut(s) | 414, 438 |
| FaqI | GGGAC | 2 cut(s) | 491, 654 |
| Fnu4HI | GCNGC | 2 cut(s) | 68, 143 |
| FokI | GGATG | 1 cut(s) | 467 |
| Fsp4HI | GCNGC | 2 cut(s) | 68, 143 |
| FspBI | CTAG | 2 cut(s) | 78, 546 |
| GlaI | GCGC | 1 cut(s) | 141 |
| GluI | GCNGC | 2 cut(s) | 68, 143 |
| GsuI | CTGGAG | 1 cut(s) | 159 |
| HaeII | RGCGCY | 1 cut(s) | 143 |
| HaeIII | GGCC | 1 cut(s) | 82 |
| HapII | CCGG | 1 cut(s) | 686 |
| HhaI | GCGC | 1 cut(s) | 142 |
| Hin6I | GCGC | 1 cut(s) | 140 |
| HinP1I | GCGC | 1 cut(s) | 140 |
| HindIII | AAGCTT | 1 cut(s) | 368 |
| HinfI | GANTC | 2 cut(s) | 551, 646 |
| HpaII | CCGG | 1 cut(s) | 686 |
| HphI | GGTGA | 4 cut(s) | 248, 284, 440, 627 |
| Hpy166II | GTNNAC | 3 cut(s) | 103, 188, 262 |
| Hpy188III | TCNNGA | 1 cut(s) | 56 |
| Hpy8I | GTNNAC | 3 cut(s) | 103, 188, 262 |
| HpyCH4III | ACNGT | 1 cut(s) | 631 |
| HpyCH4IV | ACGT | 7 cut(s) | 216, 264, 336, 480, 498, 562, 655 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 88, 367 |
| HpyF3I | CTNAG | 4 cut(s) | 44, 371, 576, 639 |
| HpySE526I | ACGT | 7 cut(s) | 216, 264, 336, 480, 498, 562, 655 |
| HspAI | GCGC | 1 cut(s) | 140 |
| LmnI | GCTCC | 2 cut(s) | 178, 308 |
| Lsp1109I | GCAGC | 2 cut(s) | 79, 129 |
| MaeI | CTAG | 2 cut(s) | 78, 546 |
| MaeII | ACGT | 7 cut(s) | 216, 264, 336, 480, 498, 562, 655 |
| MaeIII | GTNAC | 1 cut(s) | 625 |
| MboII | GAAGA | 2 cut(s) | 133, 655 |
| MluCI | AATT | 2 cut(s) | 195, 401 |
| MlyI | GAGTC | 2 cut(s) | 560, 655 |
| MnlI | CCTC | 7 cut(s) | 13, 232, 268, 274, 346, 372, 682 |
| Mph1103I | ATGCAT | 2 cut(s) | 414, 438 |
| MseI | TTAA | 4 cut(s) | 86, 150, 227, 419 |
| MslI | CAYNNNNRTG | 1 cut(s) | 453 |
| MspA1I | CMGCKG | 2 cut(s) | 70, 98 |
| MspI | CCGG | 1 cut(s) | 686 |
| MspR9I | CCNGG | 2 cut(s) | 177, 651 |
| Mva1269I | GAATGC | 1 cut(s) | 130 |
| MvaI | CCWGG | 2 cut(s) | 177, 651 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 88, 367 |
| NlaIV | GGNNCC | 1 cut(s) | 684 |
| NsiI | ATGCAT | 2 cut(s) | 414, 438 |
| NspI | RCATGY | 2 cut(s) | 412, 440 |
| PceI | AGGCCT | 1 cut(s) | 82 |
| PctI | GAATGC | 1 cut(s) | 130 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 182 |
| PfoI | TCCNGGA | 2 cut(s) | 175, 649 |
| PkrI | GCNGC | 2 cut(s) | 69, 144 |
| PleI | GAGTC | 2 cut(s) | 559, 654 |
| PpsI | GAGTC | 2 cut(s) | 559, 654 |
| PshAI | GACNNNNGTC | 1 cut(s) | 252 |
| Psp1406I | AACGTT | 1 cut(s) | 562 |
| Psp6I | CCWGG | 2 cut(s) | 175, 649 |
| PspGI | CCWGG | 2 cut(s) | 175, 649 |
| PspN4I | GGNNCC | 1 cut(s) | 684 |
| PspPI | GGNCC | 2 cut(s) | 188, 683 |
| PvuII | CAGCTG | 2 cut(s) | 70, 98 |
| RsaI | GTAC | 2 cut(s) | 483, 658 |
| RsaNI | GTAC | 2 cut(s) | 482, 657 |
| RseI | CAYNNNNRTG | 1 cut(s) | 453 |
| SaqAI | TTAA | 4 cut(s) | 86, 150, 227, 419 |
| SatI | GCNGC | 2 cut(s) | 68, 143 |
| Sau96I | GGNCC | 2 cut(s) | 188, 683 |
| SchI | GAGTC | 2 cut(s) | 560, 655 |
| ScrFI | CCNGG | 2 cut(s) | 177, 651 |
| SinI | GGWCC | 2 cut(s) | 188, 683 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 453 |
| SmlI | CTYRAG | 1 cut(s) | 17 |
| SmoI | CTYRAG | 1 cut(s) | 17 |
| Sse9I | AATT | 2 cut(s) | 195, 401 |
| SseBI | AGGCCT | 1 cut(s) | 82 |
| SsiI | CCGC | 1 cut(s) | 128 |
| SspMI | CTAG | 2 cut(s) | 78, 546 |
| StuI | AGGCCT | 1 cut(s) | 82 |
| StyD4I | CCNGG | 2 cut(s) | 175, 649 |
| TaaI | ACNGT | 1 cut(s) | 631 |
| TaiI | ACGT | 7 cut(s) | 219, 267, 339, 483, 501, 565, 658 |
| TaqI | TCGA | 1 cut(s) | 692 |
| TasI | AATT | 2 cut(s) | 195, 401 |
| Tru1I | TTAA | 4 cut(s) | 86, 150, 227, 419 |
| Tru9I | TTAA | 4 cut(s) | 86, 150, 227, 419 |
| TseI | GCWGC | 2 cut(s) | 67, 142 |
| TspDTI | ATGAA | 1 cut(s) | 378 |
| TspGWI | ACGGA | 1 cut(s) | 664 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 182 |
| VpaK11BI | GGWCC | 2 cut(s) | 188, 683 |
| XceI | RCATGY | 2 cut(s) | 412, 440 |
| XspI | CTAG | 2 cut(s) | 78, 546 |
| Zsp2I | ATGCAT | 2 cut(s) | 414, 438 |