Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 139 |
| AccIII | TCCGGA | 1 cut(s) | 207 |
| AciI | CCGC | 1 cut(s) | 139 |
| AclWI | GGATC | 2 cut(s) | 371, 384 |
| AcsI | RAATTY | 1 cut(s) | 233 |
| AcuI | CTGAAG | 1 cut(s) | 309 |
| AfaI | GTAC | 1 cut(s) | 33 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 365 |
| AgsI | TTSAA | 1 cut(s) | 283 |
| AluBI | AGCT | 1 cut(s) | 74 |
| AluI | AGCT | 1 cut(s) | 74 |
| AlwI | GGATC | 2 cut(s) | 371, 384 |
| Aor13HI | TCCGGA | 1 cut(s) | 207 |
| ApeKI | GCWGC | 1 cut(s) | 310 |
| ApoI | RAATTY | 1 cut(s) | 233 |
| AspS9I | GGNCC | 2 cut(s) | 115, 355 |
| AsuC2I | CCSGG | 1 cut(s) | 381 |
| AvaII | GGWCC | 2 cut(s) | 115, 355 |
| BamHI | GGATCC | 1 cut(s) | 376 |
| BauI | CACGAG | 1 cut(s) | 149 |
| BbsI | GAAGAC | 2 cut(s) | 265, 300 |
| BbvI | GCAGC | 1 cut(s) | 297 |
| BccI | CCATC | 4 cut(s) | 359, 367, 451, 456 |
| BcnI | CCSGG | 1 cut(s) | 381 |
| BfaI | CTAG | 3 cut(s) | 71, 303, 395 |
| BglII | AGATCT | 1 cut(s) | 213 |
| BisI | GCNGC | 1 cut(s) | 311 |
| BlpI | GCTNAGC | 1 cut(s) | 135 |
| BlsI | GCNGC | 1 cut(s) | 312 |
| Bme1390I | CCNGG | 1 cut(s) | 381 |
| Bme18I | GGWCC | 2 cut(s) | 115, 355 |
| BmgT120I | GGNCC | 2 cut(s) | 115, 355 |
| BmiI | GGNNCC | 3 cut(s) | 117, 357, 378 |
| BmrFI | CCNGG | 1 cut(s) | 381 |
| BmsI | GCATC | 1 cut(s) | 210 |
| BoxI | GACNNNNGTC | 1 cut(s) | 60 |
| BpiI | GAAGAC | 2 cut(s) | 265, 300 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 135 |
| BpuMI | CCSGG | 1 cut(s) | 381 |
| BsaBI | GATNNNNATC | 1 cut(s) | 90 |
| BsaJI | CCNNGG | 3 cut(s) | 225, 323, 380 |
| BsaWI | WCCGGW | 1 cut(s) | 207 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 15, 45 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 365 |
| Bse1I | ACTGG | 1 cut(s) | 351 |
| Bse8I | GATNNNNATC | 1 cut(s) | 90 |
| BseAI | TCCGGA | 1 cut(s) | 207 |
| BseDI | CCNNGG | 3 cut(s) | 225, 323, 380 |
| BseGI | GGATG | 4 cut(s) | 88, 204, 375, 467 |
| BseJI | GATNNNNATC | 1 cut(s) | 90 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 365 |
| BseMII | CTCAG | 1 cut(s) | 126 |
| BseNI | ACTGG | 1 cut(s) | 351 |
| BseRI | GAGGAG | 1 cut(s) | 56 |
| BseXI | GCAGC | 1 cut(s) | 297 |
| BsiSI | CCGG | 2 cut(s) | 208, 380 |
| BslFI | GGGAC | 1 cut(s) | 341 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 365 |
| BsmFI | GGGAC | 1 cut(s) | 341 |
| Bsp13I | TCCGGA | 1 cut(s) | 207 |
| Bsp143I | GATC | 4 cut(s) | 91, 213, 240, 376 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 135 |
| BspACI | CCGC | 1 cut(s) | 139 |
| BspCNI | CTCAG | 1 cut(s) | 127 |
| BspEI | TCCGGA | 1 cut(s) | 207 |
| BspLI | GGNNCC | 3 cut(s) | 117, 357, 378 |
| BspPI | GGATC | 2 cut(s) | 371, 384 |
| BsrBI | CCGCTC | 1 cut(s) | 139 |
| BsrI | ACTGG | 1 cut(s) | 351 |
| BssECI | CCNNGG | 3 cut(s) | 225, 323, 380 |
| BssMI | GATC | 4 cut(s) | 91, 213, 240, 376 |
| BssSI | CACGAG | 1 cut(s) | 149 |
| BssT1I | CCWWGG | 2 cut(s) | 225, 323 |
| Bst2BI | CACGAG | 1 cut(s) | 149 |
| Bst4CI | ACNGT | 1 cut(s) | 109 |
| BstDEI | CTNAG | 1 cut(s) | 135 |
| BstF5I | GGATG | 4 cut(s) | 88, 204, 375, 467 |
| BstKTI | GATC | 4 cut(s) | 94, 216, 243, 379 |
| BstMBI | GATC | 4 cut(s) | 91, 213, 240, 376 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 145 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 60 |
| BstSCI | CCNGG | 1 cut(s) | 379 |
| BstV1I | GCAGC | 1 cut(s) | 297 |
| BstV2I | GAAGAC | 2 cut(s) | 265, 300 |
| BstX2I | RGATCY | 2 cut(s) | 213, 376 |
| BstYI | RGATCY | 2 cut(s) | 213, 376 |
| BtsCI | GGATG | 4 cut(s) | 88, 204, 375, 467 |
| Cfr13I | GGNCC | 2 cut(s) | 115, 355 |
| CseI | GACGC | 1 cut(s) | 207 |
| Csp6I | GTAC | 1 cut(s) | 32 |
| CviJI | RGCY | 4 cut(s) | 74, 134, 148, 321 |
| CviKI_1 | RGCY | 4 cut(s) | 74, 134, 148, 321 |
| CviQI | GTAC | 1 cut(s) | 32 |
| DdeI | CTNAG | 1 cut(s) | 135 |
| DpnI | GATC | 4 cut(s) | 93, 215, 242, 378 |
| DpnII | GATC | 4 cut(s) | 91, 213, 240, 376 |
| Eco130I | CCWWGG | 2 cut(s) | 225, 323 |
| Eco47I | GGWCC | 2 cut(s) | 115, 355 |
| Eco57I | CTGAAG | 1 cut(s) | 309 |
| EcoO109I | RGGNCCY | 1 cut(s) | 115 |
| EcoT14I | CCWWGG | 2 cut(s) | 225, 323 |
| ErhI | CCWWGG | 2 cut(s) | 225, 323 |
| FaiI | YATR | 3 cut(s) | 77, 299, 333 |
| FaqI | GGGAC | 1 cut(s) | 341 |
| Fnu4HI | GCNGC | 1 cut(s) | 311 |
| FokI | GGATG | 4 cut(s) | 95, 191, 382, 474 |
| Fsp4HI | GCNGC | 1 cut(s) | 311 |
| FspBI | CTAG | 3 cut(s) | 71, 303, 395 |
| GluI | GCNGC | 1 cut(s) | 311 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HapII | CCGG | 2 cut(s) | 208, 380 |
| HgaI | GACGC | 1 cut(s) | 207 |
| HincII | GTYRAC | 3 cut(s) | 165, 181, 222 |
| HindII | GTYRAC | 3 cut(s) | 165, 181, 222 |
| HinfI | GANTC | 1 cut(s) | 188 |
| HpaII | CCGG | 2 cut(s) | 208, 380 |
| Hpy166II | GTNNAC | 4 cut(s) | 52, 165, 181, 222 |
| Hpy188I | TCNGA | 3 cut(s) | 197, 262, 289 |
| Hpy188III | TCNNGA | 4 cut(s) | 95, 208, 404, 412 |
| Hpy8I | GTNNAC | 4 cut(s) | 52, 165, 181, 222 |
| Hpy99I | CGWCG | 2 cut(s) | 69, 188 |
| HpyAV | CCTTC | 3 cut(s) | 151, 169, 289 |
| HpyCH4III | ACNGT | 1 cut(s) | 109 |
| HpyCH4IV | ACGT | 1 cut(s) | 183 |
| HpyCH4V | TGCA | 2 cut(s) | 170, 313 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 145 |
| HpyF3I | CTNAG | 1 cut(s) | 135 |
| HpySE526I | ACGT | 1 cut(s) | 183 |
| Kpn2I | TCCGGA | 1 cut(s) | 207 |
| Kzo9I | GATC | 4 cut(s) | 91, 213, 240, 376 |
| LpnPI | CCDG | 8 cut(s) | 65, 80, 202, 221, 332, 389, 393, 397 |
| Lsp1109I | GCAGC | 1 cut(s) | 297 |
| LweI | GCATC | 1 cut(s) | 210 |
| MaeI | CTAG | 3 cut(s) | 71, 303, 395 |
| MaeII | ACGT | 1 cut(s) | 183 |
| MalI | GATC | 4 cut(s) | 93, 215, 242, 378 |
| MbiI | CCGCTC | 1 cut(s) | 139 |
| MboI | GATC | 4 cut(s) | 91, 213, 240, 376 |
| MboII | GAAGA | 6 cut(s) | 223, 265, 302, 305, 466, 478 |
| MflI | RGATCY | 2 cut(s) | 213, 376 |
| MluCI | AATT | 1 cut(s) | 233 |
| MnlI | CCTC | 7 cut(s) | 13, 34, 37, 91, 106, 223, 258 |
| MroI | TCCGGA | 1 cut(s) | 207 |
| MseI | TTAA | 1 cut(s) | 423 |
| MspI | CCGG | 2 cut(s) | 208, 380 |
| MspR9I | CCNGG | 1 cut(s) | 381 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 145 |
| NciI | CCSGG | 1 cut(s) | 381 |
| NdeII | GATC | 4 cut(s) | 91, 213, 240, 376 |
| NlaIV | GGNNCC | 3 cut(s) | 117, 357, 378 |
| PfeI | GAWTC | 1 cut(s) | 188 |
| PkrI | GCNGC | 1 cut(s) | 312 |
| PpuMI | RGGWCCY | 1 cut(s) | 115 |
| PshAI | GACNNNNGTC | 1 cut(s) | 60 |
| Psp5II | RGGWCCY | 1 cut(s) | 115 |
| PspN4I | GGNNCC | 3 cut(s) | 117, 357, 378 |
| PspPI | GGNCC | 2 cut(s) | 115, 355 |
| PspPPI | RGGWCCY | 1 cut(s) | 115 |
| PsuI | RGATCY | 2 cut(s) | 213, 376 |
| RsaI | GTAC | 1 cut(s) | 33 |
| RsaNI | GTAC | 1 cut(s) | 32 |
| SaqAI | TTAA | 1 cut(s) | 423 |
| SatI | GCNGC | 1 cut(s) | 311 |
| Sau3AI | GATC | 4 cut(s) | 91, 213, 240, 376 |
| Sau96I | GGNCC | 2 cut(s) | 115, 355 |
| ScrFI | CCNGG | 1 cut(s) | 381 |
| SetI | ASST | 8 cut(s) | 48, 76, 102, 162, 180, 186, 269, 319 |
| SfaNI | GCATC | 1 cut(s) | 210 |
| SinI | GGWCC | 2 cut(s) | 115, 355 |
| Sse9I | AATT | 1 cut(s) | 233 |
| SsiI | CCGC | 1 cut(s) | 139 |
| SspMI | CTAG | 3 cut(s) | 71, 303, 395 |
| StyD4I | CCNGG | 1 cut(s) | 379 |
| StyI | CCWWGG | 2 cut(s) | 225, 323 |
| TaaI | ACNGT | 1 cut(s) | 109 |
| TaiI | ACGT | 1 cut(s) | 186 |
| TaqI | TCGA | 3 cut(s) | 18, 186, 239 |
| TasI | AATT | 1 cut(s) | 233 |
| TfiI | GAWTC | 1 cut(s) | 188 |
| Tru1I | TTAA | 1 cut(s) | 423 |
| Tru9I | TTAA | 1 cut(s) | 423 |
| TseI | GCWGC | 1 cut(s) | 310 |
| TspGWI | ACGGA | 1 cut(s) | 464 |
| VpaK11BI | GGWCC | 2 cut(s) | 115, 355 |
| XapI | RAATTY | 1 cut(s) | 233 |
| XspI | CTAG | 3 cut(s) | 71, 303, 395 |