Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 380 |
| AccB1I | GGYRCC | 1 cut(s) | 380 |
| AccIII | TCCGGA | 1 cut(s) | 60 |
| AciI | CCGC | 4 cut(s) | 80, 580, 602, 719 |
| AclWI | GGATC | 2 cut(s) | 14, 71 |
| AcoI | YGGCCR | 2 cut(s) | 103, 357 |
| AcsI | RAATTY | 1 cut(s) | 723 |
| AcuI | CTGAAG | 1 cut(s) | 152 |
| AcyI | GRCGYC | 1 cut(s) | 266 |
| AfaI | GTAC | 3 cut(s) | 86, 382, 543 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 390, 449, 465, 626, 649 |
| AgsI | TTSAA | 3 cut(s) | 524, 573, 713 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 9 |
| AjnI | CCWGG | 1 cut(s) | 359 |
| AluBI | AGCT | 2 cut(s) | 487, 656 |
| AluI | AGCT | 2 cut(s) | 487, 656 |
| Alw26I | GTCTC | 2 cut(s) | 37, 124 |
| AlwI | GGATC | 2 cut(s) | 14, 71 |
| Aor13HI | TCCGGA | 1 cut(s) | 60 |
| AoxI | GGCC | 4 cut(s) | 103, 357, 562, 612 |
| ApoI | RAATTY | 1 cut(s) | 723 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 201 |
| Asp718I | GGTACC | 1 cut(s) | 380 |
| AspS9I | GGNCC | 5 cut(s) | 58, 363, 562, 599, 695 |
| AsuC2I | CCSGG | 1 cut(s) | 153 |
| AsuHPI | GGTGA | 3 cut(s) | 109, 448, 545 |
| AvaII | GGWCC | 4 cut(s) | 58, 363, 599, 695 |
| AxyI | CCTNAGG | 1 cut(s) | 435 |
| BalI | TGGCCA | 1 cut(s) | 359 |
| BanI | GGYRCC | 1 cut(s) | 380 |
| BccI | CCATC | 2 cut(s) | 524, 686 |
| BceAI | ACGGC | 1 cut(s) | 518 |
| BciT130I | CCWGG | 1 cut(s) | 361 |
| BciVI | GTATCC | 1 cut(s) | 408 |
| BcnI | CCSGG | 1 cut(s) | 153 |
| BcoDI | GTCTC | 2 cut(s) | 37, 124 |
| BfaI | CTAG | 1 cut(s) | 336 |
| BfuI | GTATCC | 1 cut(s) | 408 |
| Bme1390I | CCNGG | 2 cut(s) | 153, 361 |
| Bme18I | GGWCC | 4 cut(s) | 58, 363, 599, 695 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 9 |
| BmgT120I | GGNCC | 5 cut(s) | 58, 363, 562, 599, 695 |
| BmiI | GGNNCC | 6 cut(s) | 59, 285, 382, 432, 441, 563 |
| BmrFI | CCNGG | 2 cut(s) | 153, 361 |
| BmrI | ACTGGG | 1 cut(s) | 40 |
| BmsI | GCATC | 1 cut(s) | 150 |
| BmuI | ACTGGG | 1 cut(s) | 40 |
| BpuMI | CCSGG | 1 cut(s) | 153 |
| Bsa29I | ATCGAT | 1 cut(s) | 114 |
| BsaHI | GRCGYC | 1 cut(s) | 266 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 2 cut(s) | 106, 660 |
| BsaWI | WCCGGW | 1 cut(s) | 60 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 404, 434 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 390, 449, 465, 626, 649 |
| Bse118I | RCCGGY | 3 cut(s) | 101, 604, 697 |
| Bse1I | ACTGG | 2 cut(s) | 46, 429 |
| Bse21I | CCTNAGG | 1 cut(s) | 435 |
| BseAI | TCCGGA | 1 cut(s) | 60 |
| BseBI | CCWGG | 1 cut(s) | 361 |
| BseCI | ATCGAT | 1 cut(s) | 114 |
| BseDI | CCNNGG | 2 cut(s) | 106, 660 |
| BseGI | GGATG | 2 cut(s) | 97, 643 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 390, 449, 465, 626, 649 |
| BseMII | CTCAG | 2 cut(s) | 426, 557 |
| BseNI | ACTGG | 2 cut(s) | 46, 429 |
| BseRI | GAGGAG | 3 cut(s) | 359, 494, 497 |
| BseYI | CCCAGC | 1 cut(s) | 167 |
| BshFI | GGCC | 4 cut(s) | 105, 359, 564, 614 |
| BshNI | GGYRCC | 1 cut(s) | 380 |
| BshVI | ATCGAT | 1 cut(s) | 114 |
| BsiSI | CCGG | 6 cut(s) | 61, 102, 153, 401, 605, 698 |
| BslFI | GGGAC | 1 cut(s) | 626 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 390, 449, 465, 626, 649 |
| BsmAI | GTCTC | 2 cut(s) | 37, 124 |
| BsmFI | GGGAC | 1 cut(s) | 626 |
| BsnI | GGCC | 4 cut(s) | 105, 359, 564, 614 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp13I | TCCGGA | 1 cut(s) | 60 |
| Bsp1407I | TGTACA | 1 cut(s) | 84 |
| Bsp143I | GATC | 5 cut(s) | 19, 63, 184, 461, 489 |
| BspACI | CCGC | 4 cut(s) | 80, 580, 602, 719 |
| BspANI | GGCC | 4 cut(s) | 105, 359, 564, 614 |
| BspCNI | CTCAG | 2 cut(s) | 427, 558 |
| BspDI | ATCGAT | 1 cut(s) | 114 |
| BspEI | TCCGGA | 1 cut(s) | 60 |
| BspLI | GGNNCC | 6 cut(s) | 59, 285, 382, 432, 441, 563 |
| BspPI | GGATC | 2 cut(s) | 14, 71 |
| BspT107I | GGYRCC | 1 cut(s) | 380 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrFI | RCCGGY | 3 cut(s) | 101, 604, 697 |
| BsrGI | TGTACA | 1 cut(s) | 84 |
| BsrI | ACTGG | 2 cut(s) | 46, 429 |
| BssAI | RCCGGY | 3 cut(s) | 101, 604, 697 |
| BssECI | CCNNGG | 2 cut(s) | 106, 660 |
| BssMI | GATC | 5 cut(s) | 19, 63, 184, 461, 489 |
| BssNI | GRCGYC | 1 cut(s) | 266 |
| BssT1I | CCWWGG | 1 cut(s) | 106 |
| Bst2UI | CCWGG | 1 cut(s) | 361 |
| Bst4CI | ACNGT | 1 cut(s) | 633 |
| BstACI | GRCGYC | 1 cut(s) | 266 |
| BstAUI | TGTACA | 1 cut(s) | 84 |
| BstDEI | CTNAG | 3 cut(s) | 435, 566, 741 |
| BstEII | GGTNACC | 1 cut(s) | 97 |
| BstF5I | GGATG | 2 cut(s) | 97, 643 |
| BstKTI | GATC | 5 cut(s) | 22, 66, 187, 464, 492 |
| BstMAI | GTCTC | 2 cut(s) | 37, 124 |
| BstMBI | GATC | 5 cut(s) | 19, 63, 184, 461, 489 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 164, 337, 511 |
| BstNI | CCWGG | 1 cut(s) | 361 |
| BstPI | GGTNACC | 1 cut(s) | 97 |
| BstSCI | CCNGG | 2 cut(s) | 151, 359 |
| BstX2I | RGATCY | 1 cut(s) | 63 |
| BstYI | RGATCY | 1 cut(s) | 63 |
| Bsu15I | ATCGAT | 1 cut(s) | 114 |
| Bsu36I | CCTNAGG | 1 cut(s) | 435 |
| BsuI | GTATCC | 1 cut(s) | 408 |
| BsuRI | GGCC | 4 cut(s) | 105, 359, 564, 614 |
| BsuTUI | ATCGAT | 1 cut(s) | 114 |
| BtsCI | GGATG | 2 cut(s) | 97, 643 |
| BtsIMutI | CAGTG | 2 cut(s) | 128, 422 |
| Cfr10I | RCCGGY | 3 cut(s) | 101, 604, 697 |
| Cfr13I | GGNCC | 5 cut(s) | 58, 363, 562, 599, 695 |
| ClaI | ATCGAT | 1 cut(s) | 114 |
| CseI | GACGC | 1 cut(s) | 255 |
| Csp6I | GTAC | 3 cut(s) | 85, 381, 542 |
| CviAII | CATG | 2 cut(s) | 88, 557 |
| CviQI | GTAC | 3 cut(s) | 85, 381, 542 |
| DdeI | CTNAG | 3 cut(s) | 435, 566, 741 |
| DpnI | GATC | 5 cut(s) | 21, 65, 186, 463, 491 |
| DpnII | GATC | 5 cut(s) | 19, 63, 184, 461, 489 |
| DriI | GACNNNNNGTC | 1 cut(s) | 9 |
| EaeI | YGGCCR | 2 cut(s) | 103, 357 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 9 |
| EciI | GGCGGA | 1 cut(s) | 595 |
| Eco130I | CCWWGG | 1 cut(s) | 106 |
| Eco147I | AGGCCT | 1 cut(s) | 614 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 4 cut(s) | 58, 363, 599, 695 |
| Eco57I | CTGAAG | 1 cut(s) | 152 |
| Eco81I | CCTNAGG | 1 cut(s) | 435 |
| Eco91I | GGTNACC | 1 cut(s) | 97 |
| EcoO109I | RGGNCCY | 1 cut(s) | 562 |
| EcoO65I | GGTNACC | 1 cut(s) | 97 |
| EcoRI | GAATTC | 1 cut(s) | 723 |
| EcoRII | CCWGG | 1 cut(s) | 359 |
| EcoT14I | CCWWGG | 1 cut(s) | 106 |
| EcoT22I | ATGCAT | 1 cut(s) | 558 |
| ErhI | CCWWGG | 1 cut(s) | 106 |
| FaeI | CATG | 2 cut(s) | 91, 560 |
| FaiI | YATR | 8 cut(s) | 89, 195, 240, 294, 368, 539, 554, 558 |
| FaqI | GGGAC | 1 cut(s) | 626 |
| FatI | CATG | 2 cut(s) | 87, 556 |
| FauI | CCCGC | 1 cut(s) | 712 |
| FokI | GGATG | 2 cut(s) | 104, 650 |
| FspBI | CTAG | 1 cut(s) | 336 |
| GsaI | CCCAGC | 1 cut(s) | 171 |
| HaeIII | GGCC | 4 cut(s) | 105, 359, 564, 614 |
| HapII | CCGG | 6 cut(s) | 61, 102, 153, 401, 605, 698 |
| HgaI | GACGC | 1 cut(s) | 255 |
| Hin1I | GRCGYC | 1 cut(s) | 266 |
| Hin1II | CATG | 2 cut(s) | 91, 560 |
| HindIII | AAGCTT | 1 cut(s) | 654 |
| HinfI | GANTC | 2 cut(s) | 37, 704 |
| HpaII | CCGG | 6 cut(s) | 61, 102, 153, 401, 605, 698 |
| HphI | GGTGA | 3 cut(s) | 109, 448, 545 |
| Hpy166II | GTNNAC | 2 cut(s) | 230, 500 |
| Hpy188I | TCNGA | 3 cut(s) | 42, 444, 661 |
| Hpy188III | TCNNGA | 5 cut(s) | 34, 61, 67, 188, 689 |
| Hpy8I | GTNNAC | 2 cut(s) | 230, 500 |
| Hpy99I | CGWCG | 1 cut(s) | 264 |
| HpyAV | CCTTC | 2 cut(s) | 130, 403 |
| HpyCH4III | ACNGT | 1 cut(s) | 633 |
| HpyCH4IV | ACGT | 1 cut(s) | 297 |
| HpyCH4V | TGCA | 3 cut(s) | 158, 311, 556 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 164, 337, 511 |
| HpyF3I | CTNAG | 3 cut(s) | 435, 566, 741 |
| HpySE526I | ACGT | 1 cut(s) | 297 |
| Hsp92I | GRCGYC | 1 cut(s) | 266 |
| Hsp92II | CATG | 2 cut(s) | 91, 560 |
| Kpn2I | TCCGGA | 1 cut(s) | 60 |
| KpnI | GGTACC | 1 cut(s) | 384 |
| Kzo9I | GATC | 5 cut(s) | 19, 63, 184, 461, 489 |
| LmnI | GCTCC | 4 cut(s) | 283, 430, 484, 511 |
| LweI | GCATC | 1 cut(s) | 150 |
| MaeI | CTAG | 1 cut(s) | 336 |
| MaeII | ACGT | 1 cut(s) | 297 |
| MaeIII | GTNAC | 3 cut(s) | 97, 277, 420 |
| MalI | GATC | 5 cut(s) | 21, 65, 186, 463, 491 |
| MboI | GATC | 5 cut(s) | 19, 63, 184, 461, 489 |
| MboII | GAAGA | 4 cut(s) | 43, 145, 293, 328 |
| MflI | RGATCY | 1 cut(s) | 63 |
| MlsI | TGGCCA | 1 cut(s) | 359 |
| MluCI | AATT | 2 cut(s) | 674, 723 |
| MluNI | TGGCCA | 1 cut(s) | 359 |
| MmeI | TCCRAC | 2 cut(s) | 467, 615 |
| Mox20I | TGGCCA | 1 cut(s) | 359 |
| Mph1103I | ATGCAT | 1 cut(s) | 558 |
| MroI | TCCGGA | 1 cut(s) | 60 |
| MroXI | GAANNNNTTC | 1 cut(s) | 201 |
| MscI | TGGCCA | 1 cut(s) | 359 |
| Msp20I | TGGCCA | 1 cut(s) | 359 |
| MspA1I | CMGCKG | 1 cut(s) | 82 |
| MspI | CCGG | 6 cut(s) | 61, 102, 153, 401, 605, 698 |
| MspR9I | CCNGG | 2 cut(s) | 153, 361 |
| MvaI | CCWGG | 1 cut(s) | 361 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 164, 337, 511 |
| NciI | CCSGG | 1 cut(s) | 153 |
| NdeII | GATC | 5 cut(s) | 19, 63, 184, 461, 489 |
| NlaIII | CATG | 2 cut(s) | 91, 560 |
| NlaIV | GGNNCC | 6 cut(s) | 59, 285, 382, 432, 441, 563 |
| NmuCI | GTSAC | 3 cut(s) | 97, 277, 420 |
| NsiI | ATGCAT | 1 cut(s) | 558 |
| PceI | AGGCCT | 1 cut(s) | 614 |
| PdmI | GAANNNNTTC | 1 cut(s) | 201 |
| PfeI | GAWTC | 2 cut(s) | 37, 704 |
| Psp6I | CCWGG | 1 cut(s) | 359 |
| PspEI | GGTNACC | 1 cut(s) | 97 |
| PspFI | CCCAGC | 1 cut(s) | 167 |
| PspGI | CCWGG | 1 cut(s) | 359 |
| PspN4I | GGNNCC | 6 cut(s) | 59, 285, 382, 432, 441, 563 |
| PspPI | GGNCC | 5 cut(s) | 58, 363, 562, 599, 695 |
| PsuI | RGATCY | 1 cut(s) | 63 |
| RsaI | GTAC | 3 cut(s) | 86, 382, 543 |
| RsaNI | GTAC | 3 cut(s) | 85, 381, 542 |
| Sau3AI | GATC | 5 cut(s) | 19, 63, 184, 461, 489 |
| Sau96I | GGNCC | 5 cut(s) | 58, 363, 562, 599, 695 |
| ScrFI | CCNGG | 2 cut(s) | 153, 361 |
| SfaNI | GCATC | 1 cut(s) | 150 |
| SinI | GGWCC | 4 cut(s) | 58, 363, 599, 695 |
| Sse9I | AATT | 2 cut(s) | 674, 723 |
| SseBI | AGGCCT | 1 cut(s) | 614 |
| SsiI | CCGC | 4 cut(s) | 80, 580, 602, 719 |
| SspI | AATATT | 1 cut(s) | 73 |
| SspMI | CTAG | 1 cut(s) | 336 |
| StuI | AGGCCT | 1 cut(s) | 614 |
| StyD4I | CCNGG | 2 cut(s) | 151, 359 |
| StyI | CCWWGG | 1 cut(s) | 106 |
| TaaI | ACNGT | 1 cut(s) | 633 |
| TaiI | ACGT | 1 cut(s) | 300 |
| TaqI | TCGA | 3 cut(s) | 35, 114, 183 |
| TasI | AATT | 2 cut(s) | 674, 723 |
| TatI | WGTACW | 1 cut(s) | 84 |
| TfiI | GAWTC | 2 cut(s) | 37, 704 |
| TscAI | CASTG | 2 cut(s) | 135, 429 |
| TseFI | GTSAC | 3 cut(s) | 97, 277, 420 |
| Tsp45I | GTSAC | 3 cut(s) | 97, 277, 420 |
| TspDTI | ATGAA | 1 cut(s) | 210 |
| TspGWI | ACGGA | 4 cut(s) | 12, 296, 524, 642 |
| TspRI | CASTG | 2 cut(s) | 135, 429 |
| VpaK11BI | GGWCC | 4 cut(s) | 58, 363, 599, 695 |
| XapI | RAATTY | 1 cut(s) | 723 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 466 |
| XmnI | GAANNNNTTC | 1 cut(s) | 201 |
| XspI | CTAG | 1 cut(s) | 336 |
| Zsp2I | ATGCAT | 1 cut(s) | 558 |