ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 966, 1181 |
| AccI | GTMKAC | 1 cut(s) | 849 |
| AccII | CGCG | 1 cut(s) | 237 |
| AciI | CCGC | 4 cut(s) | 235, 313, 401, 430 |
| AclWI | GGATC | 4 cut(s) | 116, 421, 550, 841 |
| AcoI | YGGCCR | 1 cut(s) | 909 |
| AcsI | RAATTY | 1 cut(s) | 94 |
| AdeI | CACNNNGTG | 1 cut(s) | 776 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 966, 1181 |
| AgsI | TTSAA | 6 cut(s) | 92, 397, 440, 452, 494, 1032 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 853, 885, 1143, 1175 |
| AleI | CACNNNNGTG | 1 cut(s) | 111 |
| AluBI | AGCT | 3 cut(s) | 173, 614, 655 |
| AluI | AGCT | 3 cut(s) | 173, 614, 655 |
| Alw26I | GTCTC | 3 cut(s) | 179, 527, 1190 |
| AlwI | GGATC | 4 cut(s) | 116, 421, 550, 841 |
| AoxI | GGCC | 4 cut(s) | 161, 814, 909, 1001 |
| ApeKI | GCWGC | 2 cut(s) | 339, 986 |
| ApoI | RAATTY | 1 cut(s) | 94 |
| AspLEI | GCGC | 1 cut(s) | 484 |
| AspS9I | GGNCC | 3 cut(s) | 62, 161, 1001 |
| AsuHPI | GGTGA | 4 cut(s) | 578, 610, 890, 914 |
| AsuII | TTCGAA | 1 cut(s) | 764 |
| AvaII | GGWCC | 1 cut(s) | 62 |
| AxyI | CCTNAGG | 1 cut(s) | 344 |
| BalI | TGGCCA | 1 cut(s) | 911 |
| BbsI | GAAGAC | 2 cut(s) | 501, 977 |
| BbvI | GCAGC | 2 cut(s) | 351, 998 |
| BccI | CCATC | 2 cut(s) | 404, 548 |
| BcoDI | GTCTC | 3 cut(s) | 179, 527, 1190 |
| BfaI | CTAG | 4 cut(s) | 41, 194, 981, 1205 |
| BfoI | RGCGCY | 1 cut(s) | 485 |
| BisI | GCNGC | 2 cut(s) | 340, 987 |
| BlsI | GCNGC | 2 cut(s) | 341, 988 |
| Bme18I | GGWCC | 1 cut(s) | 62 |
| BmgT120I | GGNCC | 3 cut(s) | 62, 161, 1001 |
| BmiI | GGNNCC | 2 cut(s) | 63, 64 |
| BmsI | GCATC | 3 cut(s) | 37, 537, 1191 |
| BpiI | GAAGAC | 2 cut(s) | 501, 977 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 781, 813 |
| BpmI | CTGGAG | 1 cut(s) | 599 |
| Bpu14I | TTCGAA | 1 cut(s) | 764 |
| BpuEI | CTTGAG | 1 cut(s) | 293 |
| Bsa29I | ATCGAT | 2 cut(s) | 545, 1035 |
| BsaI | GGTCTC | 1 cut(s) | 1190 |
| BsaJI | CCNNGG | 1 cut(s) | 11 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 966, 1181 |
| Bse118I | RCCGGY | 1 cut(s) | 463 |
| Bse1I | ACTGG | 2 cut(s) | 369, 582 |
| Bse21I | CCTNAGG | 1 cut(s) | 344 |
| BseCI | ATCGAT | 2 cut(s) | 545, 1035 |
| BseDI | CCNNGG | 1 cut(s) | 11 |
| BseGI | GGATG | 3 cut(s) | 11, 850, 1023 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 966, 1181 |
| BseMII | CTCAG | 3 cut(s) | 129, 687, 1201 |
| BseNI | ACTGG | 2 cut(s) | 369, 582 |
| BseRI | GAGGAG | 1 cut(s) | 713 |
| BseXI | GCAGC | 2 cut(s) | 351, 998 |
| BsgI | GTGCAG | 1 cut(s) | 358 |
| Bsh1236I | CGCG | 1 cut(s) | 237 |
| BshFI | GGCC | 4 cut(s) | 163, 816, 911, 1003 |
| BshVI | ATCGAT | 2 cut(s) | 545, 1035 |
| BsiSI | CCGG | 2 cut(s) | 464, 485 |
| BslFI | GGGAC | 3 cut(s) | 75, 673, 1177 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 966, 1181 |
| BsmAI | GTCTC | 3 cut(s) | 179, 527, 1190 |
| BsmFI | GGGAC | 3 cut(s) | 75, 673, 1177 |
| BsnI | GGCC | 4 cut(s) | 163, 816, 911, 1003 |
| Bso31I | GGTCTC | 1 cut(s) | 1190 |
| Bsp119I | TTCGAA | 1 cut(s) | 764 |
| Bsp143I | GATC | 6 cut(s) | 121, 130, 190, 413, 542, 833 |
| BspACI | CCGC | 4 cut(s) | 235, 313, 401, 430 |
| BspANI | GGCC | 4 cut(s) | 163, 816, 911, 1003 |
| BspCNI | CTCAG | 3 cut(s) | 130, 688, 1200 |
| BspDI | ATCGAT | 2 cut(s) | 545, 1035 |
| BspFNI | CGCG | 1 cut(s) | 237 |
| BspLI | GGNNCC | 2 cut(s) | 63, 64 |
| BspPI | GGATC | 4 cut(s) | 116, 421, 550, 841 |
| BspT104I | TTCGAA | 1 cut(s) | 764 |
| BspTNI | GGTCTC | 1 cut(s) | 1190 |
| BsrFI | RCCGGY | 1 cut(s) | 463 |
| BsrI | ACTGG | 2 cut(s) | 369, 582 |
| BssAI | RCCGGY | 1 cut(s) | 463 |
| BssECI | CCNNGG | 1 cut(s) | 11 |
| BssMI | GATC | 6 cut(s) | 121, 130, 190, 413, 542, 833 |
| BssNAI | GTATAC | 1 cut(s) | 850 |
| BssT1I | CCWWGG | 1 cut(s) | 11 |
| Bst1107I | GTATAC | 1 cut(s) | 850 |
| Bst4CI | ACNGT | 5 cut(s) | 157, 444, 514, 538, 774 |
| Bst6I | CTCTTC | 4 cut(s) | 327, 720, 780, 805 |
| BstBI | TTCGAA | 1 cut(s) | 764 |
| BstC8I | GCNNGC | 4 cut(s) | 165, 585, 684, 755 |
| BstDEI | CTNAG | 5 cut(s) | 138, 227, 344, 696, 1187 |
| BstF5I | GGATG | 3 cut(s) | 11, 850, 1023 |
| BstFNI | CGCG | 1 cut(s) | 237 |
| BstH2I | RGCGCY | 1 cut(s) | 485 |
| BstHHI | GCGC | 1 cut(s) | 484 |
| BstKTI | GATC | 6 cut(s) | 124, 133, 193, 416, 545, 836 |
| BstMAI | GTCTC | 3 cut(s) | 179, 527, 1190 |
| BstMBI | GATC | 6 cut(s) | 121, 130, 190, 413, 542, 833 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 986 |
| BstNSI | RCATGY | 2 cut(s) | 737, 757 |
| BstUI | CGCG | 1 cut(s) | 237 |
| BstV1I | GCAGC | 2 cut(s) | 351, 998 |
| BstV2I | GAAGAC | 2 cut(s) | 501, 977 |
| BstZ17I | GTATAC | 1 cut(s) | 850 |
| Bsu15I | ATCGAT | 2 cut(s) | 545, 1035 |
| Bsu36I | CCTNAGG | 1 cut(s) | 344 |
| BsuRI | GGCC | 4 cut(s) | 163, 816, 911, 1003 |
| BsuTUI | ATCGAT | 2 cut(s) | 545, 1035 |
| BtsCI | GGATG | 3 cut(s) | 11, 850, 1023 |
| BtsI | GCAGTG | 1 cut(s) | 1024 |
| BtsIMutI | CAGTG | 3 cut(s) | 362, 779, 1024 |
| Cac8I | GCNNGC | 4 cut(s) | 165, 585, 684, 755 |
| CfoI | GCGC | 1 cut(s) | 484 |
| Cfr10I | RCCGGY | 1 cut(s) | 463 |
| Cfr13I | GGNCC | 3 cut(s) | 62, 161, 1001 |
| ClaI | ATCGAT | 2 cut(s) | 545, 1035 |
| CseI | GACGC | 2 cut(s) | 299, 578 |
| CviAII | CATG | 5 cut(s) | 665, 734, 754, 940, 1088 |
| DdeI | CTNAG | 5 cut(s) | 138, 227, 344, 696, 1187 |
| DpnI | GATC | 6 cut(s) | 123, 132, 192, 415, 544, 835 |
| DpnII | GATC | 6 cut(s) | 121, 130, 190, 413, 542, 833 |
| DraI | TTTAAA | 1 cut(s) | 477 |
| DraIII | CACNNNGTG | 1 cut(s) | 776 |
| EaeI | YGGCCR | 1 cut(s) | 909 |
| Eam1104I | CTCTTC | 4 cut(s) | 327, 720, 780, 805 |
| EarI | CTCTTC | 4 cut(s) | 327, 720, 780, 805 |
| EciI | GGCGGA | 1 cut(s) | 416 |
| Eco130I | CCWWGG | 1 cut(s) | 11 |
| Eco147I | AGGCCT | 1 cut(s) | 816 |
| Eco31I | GGTCTC | 1 cut(s) | 1190 |
| Eco47I | GGWCC | 1 cut(s) | 62 |
| Eco81I | CCTNAGG | 1 cut(s) | 344 |
| EcoO109I | RGGNCCY | 1 cut(s) | 62 |
| EcoT14I | CCWWGG | 1 cut(s) | 11 |
| ErhI | CCWWGG | 1 cut(s) | 11 |
| FaeI | CATG | 5 cut(s) | 668, 737, 757, 943, 1091 |
| FaqI | GGGAC | 3 cut(s) | 75, 673, 1177 |
| FatI | CATG | 5 cut(s) | 664, 733, 753, 939, 1087 |
| FauI | CCCGC | 1 cut(s) | 437 |
| FauNDI | CATATG | 1 cut(s) | 976 |
| FblI | GTMKAC | 1 cut(s) | 849 |
| Fnu4HI | GCNGC | 2 cut(s) | 340, 987 |
| FokI | GGATG | 3 cut(s) | 18, 857, 1010 |
| Fsp4HI | GCNGC | 2 cut(s) | 340, 987 |
| FspBI | CTAG | 4 cut(s) | 41, 194, 981, 1205 |
| GlaI | GCGC | 1 cut(s) | 483 |
| GluI | GCNGC | 2 cut(s) | 340, 987 |
| GsuI | CTGGAG | 1 cut(s) | 599 |
| HaeII | RGCGCY | 1 cut(s) | 485 |
| HaeIII | GGCC | 4 cut(s) | 163, 816, 911, 1003 |
| HapII | CCGG | 2 cut(s) | 464, 485 |
| HgaI | GACGC | 2 cut(s) | 299, 578 |
| HhaI | GCGC | 1 cut(s) | 484 |
| Hin1II | CATG | 5 cut(s) | 668, 737, 757, 943, 1091 |
| Hin6I | GCGC | 1 cut(s) | 482 |
| HinP1I | GCGC | 1 cut(s) | 482 |
| HindIII | AAGCTT | 1 cut(s) | 653 |
| HinfI | GANTC | 5 cut(s) | 231, 497, 661, 701, 794 |
| HpaII | CCGG | 2 cut(s) | 464, 485 |
| HphI | GGTGA | 4 cut(s) | 578, 610, 890, 914 |
| Hpy166II | GTNNAC | 2 cut(s) | 106, 850 |
| Hpy188I | TCNGA | 2 cut(s) | 216, 697 |
| Hpy188III | TCNNGA | 3 cut(s) | 125, 394, 917 |
| Hpy8I | GTNNAC | 2 cut(s) | 106, 850 |
| HpyAV | CCTTC | 5 cut(s) | 197, 391, 1038, 1067, 1145 |
| HpyCH4III | ACNGT | 5 cut(s) | 157, 444, 514, 538, 774 |
| HpyCH4IV | ACGT | 1 cut(s) | 637 |
| HpyCH4V | TGCA | 5 cut(s) | 339, 550, 753, 943, 1087 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 986 |
| HpyF3I | CTNAG | 5 cut(s) | 138, 227, 344, 696, 1187 |
| HpySE526I | ACGT | 1 cut(s) | 637 |
| Hsp92II | CATG | 5 cut(s) | 668, 737, 757, 943, 1091 |
| HspAI | GCGC | 1 cut(s) | 482 |
| KflI | GGGWCCC | 1 cut(s) | 62 |
| Kzo9I | GATC | 6 cut(s) | 121, 130, 190, 413, 542, 833 |
| LmnI | GCTCC | 1 cut(s) | 580 |
| Lsp1109I | GCAGC | 2 cut(s) | 351, 998 |
| LweI | GCATC | 3 cut(s) | 37, 537, 1191 |
| MaeI | CTAG | 4 cut(s) | 41, 194, 981, 1205 |
| MaeII | ACGT | 1 cut(s) | 637 |
| MaeIII | GTNAC | 5 cut(s) | 566, 598, 670, 768, 1076 |
| MalI | GATC | 6 cut(s) | 123, 132, 192, 415, 544, 835 |
| MboI | GATC | 6 cut(s) | 121, 130, 190, 413, 542, 833 |
| MboII | GAAGA | 9 cut(s) | 344, 416, 506, 737, 753, 797, 822, 982, 1082 |
| MlsI | TGGCCA | 1 cut(s) | 911 |
| MluCI | AATT | 7 cut(s) | 84, 94, 144, 279, 380, 644, 1141 |
| MluNI | TGGCCA | 1 cut(s) | 911 |
| MlyI | GAGTC | 3 cut(s) | 491, 655, 710 |
| MmeI | TCCRAC | 1 cut(s) | 718 |
| Mox20I | TGGCCA | 1 cut(s) | 911 |
| MscI | TGGCCA | 1 cut(s) | 911 |
| MseI | TTAA | 4 cut(s) | 246, 476, 933, 1169 |
| MslI | CAYNNNNRTG | 3 cut(s) | 111, 327, 1199 |
| Msp20I | TGGCCA | 1 cut(s) | 911 |
| MspI | CCGG | 2 cut(s) | 464, 485 |
| MvnI | CGCG | 1 cut(s) | 237 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 986 |
| NdeI | CATATG | 1 cut(s) | 976 |
| NdeII | GATC | 6 cut(s) | 121, 130, 190, 413, 542, 833 |
| NlaIII | CATG | 5 cut(s) | 668, 737, 757, 943, 1091 |
| NlaIV | GGNNCC | 2 cut(s) | 63, 64 |
| NmuCI | GTSAC | 4 cut(s) | 566, 598, 670, 768 |
| NspI | RCATGY | 2 cut(s) | 737, 757 |
| NspV | TTCGAA | 1 cut(s) | 764 |
| OliI | CACNNNNGTG | 1 cut(s) | 111 |
| PaeI | GCATGC | 1 cut(s) | 757 |
| PceI | AGGCCT | 1 cut(s) | 816 |
| PfeI | GAWTC | 2 cut(s) | 231, 794 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 966, 1181 |
| PkrI | GCNGC | 2 cut(s) | 341, 988 |
| PleI | GAGTC | 3 cut(s) | 491, 655, 709 |
| PpsI | GAGTC | 3 cut(s) | 491, 655, 709 |
| PpuMI | RGGWCCY | 1 cut(s) | 62 |
| Psp5II | RGGWCCY | 1 cut(s) | 62 |
| PspN4I | GGNNCC | 2 cut(s) | 63, 64 |
| PspPI | GGNCC | 3 cut(s) | 62, 161, 1001 |
| PspPPI | RGGWCCY | 1 cut(s) | 62 |
| RseI | CAYNNNNRTG | 3 cut(s) | 111, 327, 1199 |
| SaqAI | TTAA | 4 cut(s) | 246, 476, 933, 1169 |
| SatI | GCNGC | 2 cut(s) | 340, 987 |
| Sau3AI | GATC | 6 cut(s) | 121, 130, 190, 413, 542, 833 |
| Sau96I | GGNCC | 3 cut(s) | 62, 161, 1001 |
| SchI | GAGTC | 3 cut(s) | 491, 655, 710 |
| SfaNI | GCATC | 3 cut(s) | 37, 537, 1191 |
| SfuI | TTCGAA | 1 cut(s) | 764 |
| SinI | GGWCC | 1 cut(s) | 62 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 111, 327, 1199 |
| SmlI | CTYRAG | 1 cut(s) | 308 |
| SmoI | CTYRAG | 1 cut(s) | 308 |
| SphI | GCATGC | 1 cut(s) | 757 |
| Sse9I | AATT | 7 cut(s) | 84, 94, 144, 279, 380, 644, 1141 |
| SseBI | AGGCCT | 1 cut(s) | 816 |
| SsiI | CCGC | 4 cut(s) | 235, 313, 401, 430 |
| SspI | AATATT | 1 cut(s) | 823 |
| SspMI | CTAG | 4 cut(s) | 41, 194, 981, 1205 |
| StuI | AGGCCT | 1 cut(s) | 816 |
| StyI | CCWWGG | 1 cut(s) | 11 |
| TaaI | ACNGT | 5 cut(s) | 157, 444, 514, 538, 774 |
| TaiI | ACGT | 1 cut(s) | 640 |
| TaqI | TCGA | 4 cut(s) | 545, 689, 764, 1035 |
| TasI | AATT | 7 cut(s) | 84, 94, 144, 279, 380, 644, 1141 |
| TfiI | GAWTC | 2 cut(s) | 231, 794 |
| Tru1I | TTAA | 4 cut(s) | 246, 476, 933, 1169 |
| Tru9I | TTAA | 4 cut(s) | 246, 476, 933, 1169 |
| TscAI | CASTG | 3 cut(s) | 369, 779, 1024 |
| TseFI | GTSAC | 4 cut(s) | 566, 598, 670, 768 |
| TseI | GCWGC | 2 cut(s) | 339, 986 |
| Tsp45I | GTSAC | 4 cut(s) | 566, 598, 670, 768 |
| TspDTI | ATGAA | 3 cut(s) | 345, 473, 1164 |
| TspGWI | ACGGA | 1 cut(s) | 737 |
| TspRI | CASTG | 3 cut(s) | 369, 779, 1024 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 966, 1181 |
| VpaK11BI | GGWCC | 1 cut(s) | 62 |
| XapI | RAATTY | 1 cut(s) | 94 |
| XceI | RCATGY | 2 cut(s) | 737, 757 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 919 |
| XmiI | GTMKAC | 1 cut(s) | 849 |
| XspI | CTAG | 4 cut(s) | 41, 194, 981, 1205 |