Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 674 |
| Acc36I | ACCTGC | 1 cut(s) | 674 |
| AccB1I | GGYRCC | 1 cut(s) | 601 |
| AccII | CGCG | 1 cut(s) | 818 |
| AciI | CCGC | 6 cut(s) | 134, 212, 296, 446, 587, 818 |
| AclWI | GGATC | 4 cut(s) | 149, 233, 246, 755 |
| AcsI | RAATTY | 1 cut(s) | 82 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 567, 670, 776 |
| AflII | CTTAAG | 1 cut(s) | 412 |
| AgsI | TTSAA | 2 cut(s) | 63, 469 |
| AluBI | AGCT | 4 cut(s) | 374, 396, 740, 766 |
| AluI | AGCT | 4 cut(s) | 374, 396, 740, 766 |
| Alw21I | GWGCWC | 2 cut(s) | 376, 398 |
| Alw26I | GTCTC | 2 cut(s) | 104, 778 |
| AlwI | GGATC | 4 cut(s) | 149, 233, 246, 755 |
| Ama87I | CYCGRG | 1 cut(s) | 506 |
| AoxI | GGCC | 1 cut(s) | 544 |
| ApeKI | GCWGC | 2 cut(s) | 231, 655 |
| ApoI | RAATTY | 1 cut(s) | 82 |
| AsuHPI | GGTGA | 2 cut(s) | 472, 698 |
| AvaI | CYCGRG | 1 cut(s) | 506 |
| AxyI | CCTNAGG | 1 cut(s) | 400 |
| BamHI | GGATCC | 1 cut(s) | 238 |
| BanI | GGYRCC | 1 cut(s) | 601 |
| BanII | GRGCYC | 2 cut(s) | 376, 398 |
| BbsI | GAAGAC | 1 cut(s) | 184 |
| Bbv12I | GWGCWC | 2 cut(s) | 376, 398 |
| BbvI | GCAGC | 2 cut(s) | 218, 667 |
| BccI | CCATC | 1 cut(s) | 450 |
| BcoDI | GTCTC | 2 cut(s) | 104, 778 |
| BfmI | CTRYAG | 1 cut(s) | 668 |
| BfrI | CTTAAG | 1 cut(s) | 412 |
| BfuAI | ACCTGC | 1 cut(s) | 674 |
| BisI | GCNGC | 3 cut(s) | 232, 296, 656 |
| BlsI | GCNGC | 3 cut(s) | 233, 297, 657 |
| BmeT110I | CYCGRG | 1 cut(s) | 506 |
| BmiI | GGNNCC | 2 cut(s) | 240, 603 |
| BmsI | GCATC | 4 cut(s) | 604, 698, 733, 796 |
| BpiI | GAAGAC | 1 cut(s) | 184 |
| BpmI | CTGGAG | 1 cut(s) | 744 |
| BsaJI | CCNNGG | 2 cut(s) | 186, 575 |
| BsaWI | WCCGGW | 1 cut(s) | 560 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 302, 332, 804 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 567, 670, 776 |
| Bse118I | RCCGGY | 3 cut(s) | 298, 472, 604 |
| Bse1I | ACTGG | 1 cut(s) | 249 |
| Bse21I | CCTNAGG | 1 cut(s) | 400 |
| BseDI | CCNNGG | 2 cut(s) | 186, 575 |
| BseGI | GGATG | 6 cut(s) | 253, 439, 713, 724, 795, 811 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 567, 670, 776 |
| BseMII | CTCAG | 3 cut(s) | 99, 389, 789 |
| BseNI | ACTGG | 1 cut(s) | 249 |
| BseRI | GAGGAG | 1 cut(s) | 83 |
| BseXI | GCAGC | 2 cut(s) | 218, 667 |
| BseYI | CCCAGC | 1 cut(s) | 740 |
| BsgI | GTGCAG | 2 cut(s) | 426, 702 |
| Bsh1236I | CGCG | 1 cut(s) | 818 |
| BshFI | GGCC | 1 cut(s) | 546 |
| BshNI | GGYRCC | 1 cut(s) | 601 |
| BsiHKAI | GWGCWC | 2 cut(s) | 376, 398 |
| BsiHKCI | CYCGRG | 1 cut(s) | 506 |
| BsiSI | CCGG | 4 cut(s) | 299, 473, 561, 605 |
| BslFI | GGGAC | 1 cut(s) | 238 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 567, 670, 776 |
| BsmAI | GTCTC | 2 cut(s) | 104, 778 |
| BsmBI | CGTCTC | 1 cut(s) | 104 |
| BsmFI | GGGAC | 1 cut(s) | 238 |
| BsnI | GGCC | 1 cut(s) | 546 |
| BsoBI | CYCGRG | 1 cut(s) | 506 |
| Bsp1286I | GDGCHC | 2 cut(s) | 376, 398 |
| Bsp143I | GATC | 4 cut(s) | 154, 238, 502, 747 |
| Bsp19I | CCATGG | 1 cut(s) | 186 |
| BspACI | CCGC | 6 cut(s) | 134, 212, 296, 446, 587, 818 |
| BspANI | GGCC | 1 cut(s) | 546 |
| BspCNI | CTCAG | 3 cut(s) | 100, 388, 788 |
| BspFNI | CGCG | 1 cut(s) | 818 |
| BspHI | TCATGA | 1 cut(s) | 750 |
| BspLI | GGNNCC | 2 cut(s) | 240, 603 |
| BspMAI | CTGCAG | 1 cut(s) | 672 |
| BspMI | ACCTGC | 1 cut(s) | 674 |
| BspPI | GGATC | 4 cut(s) | 149, 233, 246, 755 |
| BspT107I | GGYRCC | 1 cut(s) | 601 |
| BspTI | CTTAAG | 1 cut(s) | 412 |
| BsrFI | RCCGGY | 3 cut(s) | 298, 472, 604 |
| BsrI | ACTGG | 1 cut(s) | 249 |
| BssAI | RCCGGY | 3 cut(s) | 298, 472, 604 |
| BssECI | CCNNGG | 2 cut(s) | 186, 575 |
| BssMI | GATC | 4 cut(s) | 154, 238, 502, 747 |
| BssT1I | CCWWGG | 1 cut(s) | 186 |
| Bst4CI | ACNGT | 3 cut(s) | 207, 267, 601 |
| BstAFI | CTTAAG | 1 cut(s) | 412 |
| BstC8I | GCNNGC | 2 cut(s) | 474, 606 |
| BstDEI | CTNAG | 4 cut(s) | 108, 375, 400, 775 |
| BstDSI | CCRYGG | 2 cut(s) | 186, 575 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 774 |
| BstF5I | GGATG | 6 cut(s) | 253, 439, 713, 724, 795, 811 |
| BstFNI | CGCG | 1 cut(s) | 818 |
| BstKTI | GATC | 4 cut(s) | 157, 241, 505, 750 |
| BstMAI | GTCTC | 2 cut(s) | 104, 778 |
| BstMBI | GATC | 4 cut(s) | 154, 238, 502, 747 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 20, 209, 614, 655, 815 |
| BstSFI | CTRYAG | 1 cut(s) | 668 |
| BstUI | CGCG | 1 cut(s) | 818 |
| BstV1I | GCAGC | 2 cut(s) | 218, 667 |
| BstV2I | GAAGAC | 1 cut(s) | 184 |
| BstX2I | RGATCY | 1 cut(s) | 238 |
| BstYI | RGATCY | 1 cut(s) | 238 |
| Bsu36I | CCTNAGG | 1 cut(s) | 400 |
| BsuRI | GGCC | 1 cut(s) | 546 |
| BtgI | CCRYGG | 2 cut(s) | 186, 575 |
| BtsCI | GGATG | 6 cut(s) | 253, 439, 713, 724, 795, 811 |
| BtsIMutI | CAGTG | 2 cut(s) | 203, 242 |
| BveI | ACCTGC | 1 cut(s) | 674 |
| Cac8I | GCNNGC | 2 cut(s) | 474, 606 |
| CciI | TCATGA | 1 cut(s) | 750 |
| Cfr10I | RCCGGY | 3 cut(s) | 298, 472, 604 |
| CseI | GACGC | 1 cut(s) | 171 |
| CviAII | CATG | 2 cut(s) | 187, 751 |
| DdeI | CTNAG | 4 cut(s) | 108, 375, 400, 775 |
| DpnI | GATC | 4 cut(s) | 156, 240, 504, 749 |
| DpnII | GATC | 4 cut(s) | 154, 238, 502, 747 |
| Ecl136II | GAGCTC | 2 cut(s) | 374, 396 |
| Eco130I | CCWWGG | 1 cut(s) | 186 |
| Eco24I | GRGCYC | 2 cut(s) | 376, 398 |
| Eco53kI | GAGCTC | 2 cut(s) | 374, 396 |
| Eco81I | CCTNAGG | 1 cut(s) | 400 |
| Eco88I | CYCGRG | 1 cut(s) | 506 |
| EcoICRI | GAGCTC | 2 cut(s) | 374, 396 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 774 |
| EcoT14I | CCWWGG | 1 cut(s) | 186 |
| EcoT38I | GRGCYC | 2 cut(s) | 376, 398 |
| ErhI | CCWWGG | 1 cut(s) | 186 |
| Esp3I | CGTCTC | 1 cut(s) | 104 |
| FaeI | CATG | 2 cut(s) | 190, 754 |
| FaiI | YATR | 7 cut(s) | 188, 306, 308, 513, 558, 612, 752 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 21, 53, 633, 665 |
| FaqI | GGGAC | 1 cut(s) | 238 |
| FatI | CATG | 2 cut(s) | 186, 750 |
| FauI | CCCGC | 1 cut(s) | 580 |
| Fnu4HI | GCNGC | 3 cut(s) | 232, 296, 656 |
| FokI | GGATG | 6 cut(s) | 260, 446, 711, 720, 802, 818 |
| FriOI | GRGCYC | 2 cut(s) | 376, 398 |
| Fsp4HI | GCNGC | 3 cut(s) | 232, 296, 656 |
| GluI | GCNGC | 3 cut(s) | 232, 296, 656 |
| GsaI | CCCAGC | 1 cut(s) | 744 |
| GsuI | CTGGAG | 1 cut(s) | 744 |
| HaeIII | GGCC | 1 cut(s) | 546 |
| HapII | CCGG | 4 cut(s) | 299, 473, 561, 605 |
| HgaI | GACGC | 1 cut(s) | 171 |
| Hin1II | CATG | 2 cut(s) | 190, 754 |
| HincII | GTYRAC | 2 cut(s) | 105, 597 |
| HindII | GTYRAC | 2 cut(s) | 105, 597 |
| HinfI | GANTC | 2 cut(s) | 277, 813 |
| HpaII | CCGG | 4 cut(s) | 299, 473, 561, 605 |
| HphI | GGTGA | 2 cut(s) | 472, 698 |
| Hpy166II | GTNNAC | 4 cut(s) | 105, 463, 575, 597 |
| Hpy188I | TCNGA | 2 cut(s) | 378, 789 |
| Hpy188III | TCNNGA | 4 cut(s) | 274, 506, 751, 761 |
| Hpy8I | GTNNAC | 4 cut(s) | 105, 463, 575, 597 |
| Hpy99I | CGWCG | 1 cut(s) | 165 |
| HpyAV | CCTTC | 3 cut(s) | 373, 631, 683 |
| HpyCH4III | ACNGT | 3 cut(s) | 207, 267, 601 |
| HpyCH4V | TGCA | 7 cut(s) | 443, 617, 655, 670, 683, 711, 724 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 20, 209, 614, 655, 815 |
| HpyF3I | CTNAG | 4 cut(s) | 108, 375, 400, 775 |
| Hsp92II | CATG | 2 cut(s) | 190, 754 |
| KroI | GCCGGC | 2 cut(s) | 472, 604 |
| KroNI | GCCGGC | 2 cut(s) | 474, 606 |
| Kzo9I | GATC | 4 cut(s) | 154, 238, 502, 747 |
| LmnI | GCTCC | 2 cut(s) | 401, 763 |
| Lsp1109I | GCAGC | 2 cut(s) | 218, 667 |
| LweI | GCATC | 4 cut(s) | 604, 698, 733, 796 |
| MaeIII | GTNAC | 1 cut(s) | 220 |
| MalI | GATC | 4 cut(s) | 156, 240, 504, 749 |
| MboI | GATC | 4 cut(s) | 154, 238, 502, 747 |
| MboII | GAAGA | 6 cut(s) | 47, 122, 184, 262, 653, 745 |
| MflI | RGATCY | 1 cut(s) | 238 |
| MhlI | GDGCHC | 2 cut(s) | 376, 398 |
| MluCI | AATT | 2 cut(s) | 82, 417 |
| MlyI | GAGTC | 1 cut(s) | 822 |
| MmeI | TCCRAC | 1 cut(s) | 126 |
| MroNI | GCCGGC | 2 cut(s) | 472, 604 |
| MseI | TTAA | 2 cut(s) | 413, 624 |
| MspA1I | CMGCKG | 1 cut(s) | 448 |
| MspCI | CTTAAG | 1 cut(s) | 412 |
| MspI | CCGG | 4 cut(s) | 299, 473, 561, 605 |
| MvnI | CGCG | 1 cut(s) | 818 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 20, 209, 614, 655, 815 |
| NaeI | GCCGGC | 2 cut(s) | 474, 606 |
| NcoI | CCATGG | 1 cut(s) | 186 |
| NdeII | GATC | 4 cut(s) | 154, 238, 502, 747 |
| NgoMIV | GCCGGC | 2 cut(s) | 472, 604 |
| NlaIII | CATG | 2 cut(s) | 190, 754 |
| NlaIV | GGNNCC | 2 cut(s) | 240, 603 |
| NmuCI | GTSAC | 1 cut(s) | 220 |
| PaeR7I | CTCGAG | 1 cut(s) | 506 |
| PagI | TCATGA | 1 cut(s) | 750 |
| PaqCI | CACCTGC | 1 cut(s) | 674 |
| PdiI | GCCGGC | 2 cut(s) | 474, 606 |
| PfeI | GAWTC | 1 cut(s) | 277 |
| PkrI | GCNGC | 3 cut(s) | 233, 297, 657 |
| PleI | GAGTC | 1 cut(s) | 821 |
| PpsI | GAGTC | 1 cut(s) | 821 |
| Psp124BI | GAGCTC | 2 cut(s) | 376, 398 |
| PspFI | CCCAGC | 1 cut(s) | 740 |
| PspN4I | GGNNCC | 2 cut(s) | 240, 603 |
| PstI | CTGCAG | 1 cut(s) | 672 |
| PsuI | RGATCY | 1 cut(s) | 238 |
| SacI | GAGCTC | 2 cut(s) | 376, 398 |
| SaqAI | TTAA | 2 cut(s) | 413, 624 |
| SatI | GCNGC | 3 cut(s) | 232, 296, 656 |
| Sau3AI | GATC | 4 cut(s) | 154, 238, 502, 747 |
| SchI | GAGTC | 1 cut(s) | 822 |
| SduI | GDGCHC | 2 cut(s) | 376, 398 |
| SfaNI | GCATC | 4 cut(s) | 604, 698, 733, 796 |
| SfcI | CTRYAG | 1 cut(s) | 668 |
| Sfr274I | CTCGAG | 1 cut(s) | 506 |
| SgrAI | CRCCGGYG | 1 cut(s) | 298 |
| SlaI | CTCGAG | 1 cut(s) | 506 |
| SmlI | CTYRAG | 2 cut(s) | 412, 506 |
| SmoI | CTYRAG | 2 cut(s) | 412, 506 |
| Sse9I | AATT | 2 cut(s) | 82, 417 |
| SsiI | CCGC | 6 cut(s) | 134, 212, 296, 446, 587, 818 |
| SspI | AATATT | 1 cut(s) | 52 |
| SstI | GAGCTC | 2 cut(s) | 376, 398 |
| StyI | CCWWGG | 1 cut(s) | 186 |
| TaaI | ACNGT | 3 cut(s) | 207, 267, 601 |
| TaqI | TCGA | 6 cut(s) | 160, 195, 258, 286, 501, 507 |
| TasI | AATT | 2 cut(s) | 82, 417 |
| TauI | GCSGC | 1 cut(s) | 298 |
| TfiI | GAWTC | 1 cut(s) | 277 |
| Tru1I | TTAA | 2 cut(s) | 413, 624 |
| Tru9I | TTAA | 2 cut(s) | 413, 624 |
| TscAI | CASTG | 2 cut(s) | 210, 249 |
| TseFI | GTSAC | 1 cut(s) | 220 |
| TseI | GCWGC | 2 cut(s) | 231, 655 |
| Tsp45I | GTSAC | 1 cut(s) | 220 |
| TspDTI | ATGAA | 1 cut(s) | 528 |
| TspGWI | ACGGA | 3 cut(s) | 128, 592, 653 |
| TspRI | CASTG | 2 cut(s) | 210, 249 |
| Vha464I | CTTAAG | 1 cut(s) | 412 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 774 |
| XapI | RAATTY | 1 cut(s) | 82 |
| XhoI | CTCGAG | 1 cut(s) | 506 |