ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 515, 572 |
| AccI | GTMKAC | 2 cut(s) | 196, 978 |
| AciI | CCGC | 7 cut(s) | 70, 158, 449, 866, 985, 1011, 1027 |
| AclWI | GGATC | 1 cut(s) | 92 |
| AcsI | RAATTY | 2 cut(s) | 486, 709 |
| AdeI | CACNNNGTG | 1 cut(s) | 101 |
| AfaI | GTAC | 4 cut(s) | 21, 38, 500, 722 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 16, 226, 502, 515, 572, 887 |
| AflII | CTTAAG | 1 cut(s) | 698 |
| AgsI | TTSAA | 4 cut(s) | 26, 247, 391, 860 |
| AhlI | ACTAGT | 1 cut(s) | 416 |
| AjnI | CCWGG | 3 cut(s) | 380, 479, 658 |
| AluBI | AGCT | 1 cut(s) | 703 |
| AluI | AGCT | 1 cut(s) | 703 |
| Alw26I | GTCTC | 2 cut(s) | 402, 506 |
| AlwI | GGATC | 1 cut(s) | 92 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 515 |
| AoxI | GGCC | 3 cut(s) | 250, 477, 941 |
| ApeKI | GCWGC | 2 cut(s) | 63, 72 |
| ApoI | RAATTY | 2 cut(s) | 486, 709 |
| AseI | ATTAAT | 1 cut(s) | 570 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 179 |
| AspS9I | GGNCC | 5 cut(s) | 90, 250, 477, 588, 868 |
| AsuHPI | GGTGA | 1 cut(s) | 290 |
| AsuII | TTCGAA | 1 cut(s) | 684 |
| AvaII | GGWCC | 3 cut(s) | 90, 588, 868 |
| AxyI | CCTNAGG | 1 cut(s) | 945 |
| BbvI | GCAGC | 2 cut(s) | 75, 84 |
| BccI | CCATC | 5 cut(s) | 305, 416, 550, 767, 886 |
| BciT130I | CCWGG | 3 cut(s) | 382, 481, 660 |
| BcoDI | GTCTC | 2 cut(s) | 402, 506 |
| BcuI | ACTAGT | 1 cut(s) | 416 |
| BfaI | CTAG | 5 cut(s) | 14, 264, 288, 417, 1001 |
| BfrI | CTTAAG | 1 cut(s) | 698 |
| BglII | AGATCT | 1 cut(s) | 124 |
| BisI | GCNGC | 3 cut(s) | 64, 73, 159 |
| BlsI | GCNGC | 3 cut(s) | 65, 74, 160 |
| BmcAI | AGTACT | 1 cut(s) | 722 |
| Bme1390I | CCNGG | 3 cut(s) | 382, 481, 660 |
| Bme18I | GGWCC | 3 cut(s) | 90, 588, 868 |
| BmgT120I | GGNCC | 5 cut(s) | 90, 250, 477, 588, 868 |
| BmiI | GGNNCC | 3 cut(s) | 507, 589, 870 |
| BmrFI | CCNGG | 3 cut(s) | 382, 481, 660 |
| BmsI | GCATC | 2 cut(s) | 75, 720 |
| Bpu14I | TTCGAA | 1 cut(s) | 684 |
| BsaJI | CCNNGG | 2 cut(s) | 380, 480 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 16, 226, 502, 515, 572, 887 |
| Bse1I | ACTGG | 2 cut(s) | 520, 986 |
| Bse21I | CCTNAGG | 1 cut(s) | 945 |
| Bse3DI | GCAATG | 1 cut(s) | 300 |
| BseBI | CCWGG | 3 cut(s) | 382, 481, 660 |
| BseDI | CCNNGG | 2 cut(s) | 380, 480 |
| BseGI | GGATG | 7 cut(s) | 66, 316, 561, 565, 735, 759, 897 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 16, 226, 502, 515, 572, 887 |
| BseMI | GCAATG | 1 cut(s) | 300 |
| BseMII | CTCAG | 2 cut(s) | 804, 936 |
| BseNI | ACTGG | 2 cut(s) | 520, 986 |
| BseRI | GAGGAG | 2 cut(s) | 923, 932 |
| BseXI | GCAGC | 2 cut(s) | 75, 84 |
| BsgI | GTGCAG | 1 cut(s) | 82 |
| BshFI | GGCC | 3 cut(s) | 252, 479, 943 |
| BslFI | GGGAC | 3 cut(s) | 363, 439, 854 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 16, 226, 502, 515, 572, 887 |
| BsmAI | GTCTC | 2 cut(s) | 402, 506 |
| BsmFI | GGGAC | 3 cut(s) | 363, 439, 854 |
| BsmI | GAATGC | 1 cut(s) | 606 |
| BsnI | GGCC | 3 cut(s) | 252, 479, 943 |
| Bsp119I | TTCGAA | 1 cut(s) | 684 |
| Bsp1407I | TGTACA | 1 cut(s) | 498 |
| Bsp143I | GATC | 3 cut(s) | 84, 124, 352 |
| BspACI | CCGC | 7 cut(s) | 70, 158, 449, 866, 985, 1011, 1027 |
| BspANI | GGCC | 3 cut(s) | 252, 479, 943 |
| BspCNI | CTCAG | 2 cut(s) | 805, 937 |
| BspHI | TCATGA | 1 cut(s) | 739 |
| BspLI | GGNNCC | 3 cut(s) | 507, 589, 870 |
| BspPI | GGATC | 1 cut(s) | 92 |
| BspT104I | TTCGAA | 1 cut(s) | 684 |
| BspTI | CTTAAG | 1 cut(s) | 698 |
| BsrDI | GCAATG | 1 cut(s) | 300 |
| BsrGI | TGTACA | 1 cut(s) | 498 |
| BsrI | ACTGG | 2 cut(s) | 520, 986 |
| BssECI | CCNNGG | 2 cut(s) | 380, 480 |
| BssMI | GATC | 3 cut(s) | 84, 124, 352 |
| Bst2UI | CCWGG | 3 cut(s) | 382, 481, 660 |
| Bst4CI | ACNGT | 5 cut(s) | 201, 546, 725, 792, 1023 |
| Bst6I | CTCTTC | 1 cut(s) | 918 |
| BstAFI | CTTAAG | 1 cut(s) | 698 |
| BstAUI | TGTACA | 1 cut(s) | 498 |
| BstBI | TTCGAA | 1 cut(s) | 684 |
| BstDEI | CTNAG | 2 cut(s) | 813, 945 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 14 |
| BstF5I | GGATG | 7 cut(s) | 66, 316, 561, 565, 735, 759, 897 |
| BstKTI | GATC | 3 cut(s) | 87, 127, 355 |
| BstMAI | GTCTC | 2 cut(s) | 402, 506 |
| BstMBI | GATC | 3 cut(s) | 84, 124, 352 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 69, 72, 457, 845 |
| BstNI | CCWGG | 3 cut(s) | 382, 481, 660 |
| BstNSI | RCATGY | 1 cut(s) | 275 |
| BstSCI | CCNGG | 3 cut(s) | 380, 479, 658 |
| BstV1I | GCAGC | 2 cut(s) | 75, 84 |
| BstX2I | RGATCY | 2 cut(s) | 84, 124 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 307, 770 |
| BstYI | RGATCY | 2 cut(s) | 84, 124 |
| Bsu36I | CCTNAGG | 1 cut(s) | 945 |
| BsuRI | GGCC | 3 cut(s) | 252, 479, 943 |
| BtsCI | GGATG | 7 cut(s) | 66, 316, 561, 565, 735, 759, 897 |
| CaiI | CAGNNNCTG | 1 cut(s) | 515 |
| CciI | TCATGA | 1 cut(s) | 739 |
| Cfr13I | GGNCC | 5 cut(s) | 90, 250, 477, 588, 868 |
| Csp6I | GTAC | 4 cut(s) | 20, 37, 499, 721 |
| CviAII | CATG | 4 cut(s) | 272, 502, 678, 740 |
| CviQI | GTAC | 4 cut(s) | 20, 37, 499, 721 |
| DdeI | CTNAG | 2 cut(s) | 813, 945 |
| DpnI | GATC | 3 cut(s) | 86, 126, 354 |
| DpnII | GATC | 3 cut(s) | 84, 124, 352 |
| DraIII | CACNNNGTG | 1 cut(s) | 101 |
| Eam1104I | CTCTTC | 1 cut(s) | 918 |
| EarI | CTCTTC | 1 cut(s) | 918 |
| EciI | GGCGGA | 1 cut(s) | 1000 |
| Eco147I | AGGCCT | 1 cut(s) | 943 |
| Eco47I | GGWCC | 3 cut(s) | 90, 588, 868 |
| Eco81I | CCTNAGG | 1 cut(s) | 945 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 14 |
| EcoO109I | RGGNCCY | 1 cut(s) | 250 |
| EcoRI | GAATTC | 1 cut(s) | 486 |
| EcoRII | CCWGG | 3 cut(s) | 380, 479, 658 |
| FaeI | CATG | 4 cut(s) | 275, 505, 681, 743 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 386, 418 |
| FaqI | GGGAC | 3 cut(s) | 363, 439, 854 |
| FatI | CATG | 4 cut(s) | 271, 501, 677, 739 |
| FauNDI | CATATG | 1 cut(s) | 77 |
| FblI | GTMKAC | 2 cut(s) | 196, 978 |
| Fnu4HI | GCNGC | 3 cut(s) | 64, 73, 159 |
| FokI | GGATG | 7 cut(s) | 53, 323, 568, 572, 742, 746, 904 |
| Fsp4HI | GCNGC | 3 cut(s) | 64, 73, 159 |
| FspBI | CTAG | 5 cut(s) | 14, 264, 288, 417, 1001 |
| GluI | GCNGC | 3 cut(s) | 64, 73, 159 |
| HaeIII | GGCC | 3 cut(s) | 252, 479, 943 |
| Hin1II | CATG | 4 cut(s) | 275, 505, 681, 743 |
| HincII | GTYRAC | 1 cut(s) | 204 |
| HindII | GTYRAC | 1 cut(s) | 204 |
| HinfI | GANTC | 4 cut(s) | 259, 376, 472, 743 |
| HphI | GGTGA | 1 cut(s) | 290 |
| Hpy166II | GTNNAC | 3 cut(s) | 197, 204, 979 |
| Hpy188I | TCNGA | 2 cut(s) | 653, 1019 |
| Hpy188III | TCNNGA | 5 cut(s) | 184, 256, 529, 706, 740 |
| Hpy8I | GTNNAC | 3 cut(s) | 197, 204, 979 |
| HpyAV | CCTTC | 3 cut(s) | 241, 261, 923 |
| HpyCH4III | ACNGT | 5 cut(s) | 201, 546, 725, 792, 1023 |
| HpyCH4V | TGCA | 4 cut(s) | 63, 460, 606, 776 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 69, 72, 457, 845 |
| HpyF3I | CTNAG | 2 cut(s) | 813, 945 |
| Hsp92II | CATG | 4 cut(s) | 275, 505, 681, 743 |
| Kzo9I | GATC | 3 cut(s) | 84, 124, 352 |
| LmnI | GCTCC | 2 cut(s) | 505, 708 |
| Lsp1109I | GCAGC | 2 cut(s) | 75, 84 |
| LweI | GCATC | 2 cut(s) | 75, 720 |
| MaeI | CTAG | 5 cut(s) | 14, 264, 288, 417, 1001 |
| MaeIII | GTNAC | 1 cut(s) | 107 |
| MalI | GATC | 3 cut(s) | 86, 126, 354 |
| MboI | GATC | 3 cut(s) | 84, 124, 352 |
| MboII | GAAGA | 4 cut(s) | 160, 187, 872, 935 |
| MfeI | CAATTG | 1 cut(s) | 777 |
| MflI | RGATCY | 2 cut(s) | 84, 124 |
| MluCI | AATT | 6 cut(s) | 358, 486, 567, 687, 709, 777 |
| MlyI | GAGTC | 2 cut(s) | 253, 385 |
| MmeI | TCCRAC | 2 cut(s) | 62, 288 |
| MroXI | GAANNNNTTC | 1 cut(s) | 179 |
| MseI | TTAA | 4 cut(s) | 453, 570, 699, 735 |
| MslI | CAYNNNNRTG | 1 cut(s) | 276 |
| MspCI | CTTAAG | 1 cut(s) | 698 |
| MspR9I | CCNGG | 3 cut(s) | 382, 481, 660 |
| MunI | CAATTG | 1 cut(s) | 777 |
| Mva1269I | GAATGC | 1 cut(s) | 606 |
| MvaI | CCWGG | 3 cut(s) | 382, 481, 660 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 69, 72, 457, 845 |
| NdeI | CATATG | 1 cut(s) | 77 |
| NdeII | GATC | 3 cut(s) | 84, 124, 352 |
| NlaIII | CATG | 4 cut(s) | 275, 505, 681, 743 |
| NlaIV | GGNNCC | 3 cut(s) | 507, 589, 870 |
| NspI | RCATGY | 1 cut(s) | 275 |
| NspV | TTCGAA | 1 cut(s) | 684 |
| PagI | TCATGA | 1 cut(s) | 739 |
| PceI | AGGCCT | 1 cut(s) | 943 |
| PctI | GAATGC | 1 cut(s) | 606 |
| PdmI | GAANNNNTTC | 1 cut(s) | 179 |
| PfeI | GAWTC | 2 cut(s) | 472, 743 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 515, 572 |
| PkrI | GCNGC | 3 cut(s) | 65, 74, 160 |
| PleI | GAGTC | 2 cut(s) | 253, 384 |
| PpsI | GAGTC | 2 cut(s) | 253, 384 |
| PshBI | ATTAAT | 1 cut(s) | 570 |
| Psp6I | CCWGG | 3 cut(s) | 380, 479, 658 |
| PspGI | CCWGG | 3 cut(s) | 380, 479, 658 |
| PspN4I | GGNNCC | 3 cut(s) | 507, 589, 870 |
| PspPI | GGNCC | 5 cut(s) | 90, 250, 477, 588, 868 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 200, 232 |
| PstNI | CAGNNNCTG | 1 cut(s) | 515 |
| PsuI | RGATCY | 2 cut(s) | 84, 124 |
| RsaI | GTAC | 4 cut(s) | 21, 38, 500, 722 |
| RsaNI | GTAC | 4 cut(s) | 20, 37, 499, 721 |
| RseI | CAYNNNNRTG | 1 cut(s) | 276 |
| SaqAI | TTAA | 4 cut(s) | 453, 570, 699, 735 |
| SatI | GCNGC | 3 cut(s) | 64, 73, 159 |
| Sau3AI | GATC | 3 cut(s) | 84, 124, 352 |
| Sau96I | GGNCC | 5 cut(s) | 90, 250, 477, 588, 868 |
| ScaI | AGTACT | 1 cut(s) | 722 |
| SchI | GAGTC | 2 cut(s) | 253, 385 |
| ScrFI | CCNGG | 3 cut(s) | 382, 481, 660 |
| SetI | ASST | 7 cut(s) | 21, 38, 62, 103, 109, 705, 1002 |
| SfaNI | GCATC | 2 cut(s) | 75, 720 |
| SfuI | TTCGAA | 1 cut(s) | 684 |
| SinI | GGWCC | 3 cut(s) | 90, 588, 868 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 276 |
| SmlI | CTYRAG | 1 cut(s) | 698 |
| SmoI | CTYRAG | 1 cut(s) | 698 |
| SpeI | ACTAGT | 1 cut(s) | 416 |
| Sse9I | AATT | 6 cut(s) | 358, 486, 567, 687, 709, 777 |
| SseBI | AGGCCT | 1 cut(s) | 943 |
| SsiI | CCGC | 7 cut(s) | 70, 158, 449, 866, 985, 1011, 1027 |
| SspMI | CTAG | 5 cut(s) | 14, 264, 288, 417, 1001 |
| StuI | AGGCCT | 1 cut(s) | 943 |
| StyD4I | CCNGG | 3 cut(s) | 380, 479, 658 |
| TaaI | ACNGT | 5 cut(s) | 201, 546, 725, 792, 1023 |
| TaqI | TCGA | 2 cut(s) | 118, 684 |
| TasI | AATT | 6 cut(s) | 358, 486, 567, 687, 709, 777 |
| TatI | WGTACW | 2 cut(s) | 498, 720 |
| TauI | GCSGC | 1 cut(s) | 161 |
| TfiI | GAWTC | 2 cut(s) | 472, 743 |
| Tru1I | TTAA | 4 cut(s) | 453, 570, 699, 735 |
| Tru9I | TTAA | 4 cut(s) | 453, 570, 699, 735 |
| TseI | GCWGC | 2 cut(s) | 63, 72 |
| TspDTI | ATGAA | 2 cut(s) | 32, 360 |
| TspGWI | ACGGA | 2 cut(s) | 443, 635 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 515, 572 |
| Vha464I | CTTAAG | 1 cut(s) | 698 |
| VpaK11BI | GGWCC | 3 cut(s) | 90, 588, 868 |
| VspI | ATTAAT | 1 cut(s) | 570 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 14 |
| XapI | RAATTY | 2 cut(s) | 486, 709 |
| XceI | RCATGY | 1 cut(s) | 275 |
| XmiI | GTMKAC | 2 cut(s) | 196, 978 |
| XmnI | GAANNNNTTC | 1 cut(s) | 179 |
| XspI | CTAG | 5 cut(s) | 14, 264, 288, 417, 1001 |
| ZrmI | AGTACT | 1 cut(s) | 722 |