Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 15 - 60 | 1.4e-07 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1081 |
| AatII | GACGTC | 1 cut(s) | 852 |
| AccB1I | GGYRCC | 1 cut(s) | 82 |
| AccII | CGCG | 2 cut(s) | 984, 1125 |
| AccIII | TCCGGA | 1 cut(s) | 514 |
| AciI | CCGC | 6 cut(s) | 455, 466, 469, 630, 984, 1125 |
| AcsI | RAATTY | 4 cut(s) | 104, 371, 643, 916 |
| AcvI | CACGTG | 1 cut(s) | 688 |
| AcyI | GRCGYC | 1 cut(s) | 849 |
| AfaI | GTAC | 1 cut(s) | 357 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 338, 485, 734, 1145 |
| AgeI | ACCGGT | 1 cut(s) | 478 |
| AgsI | TTSAA | 4 cut(s) | 253, 649, 1011, 1178 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 608 |
| AjnI | CCWGG | 2 cut(s) | 85, 820 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 233, 265 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 200, 232 |
| Alw26I | GTCTC | 2 cut(s) | 616, 893 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1022 |
| Ama87I | CYCGRG | 1 cut(s) | 613 |
| Aor13HI | TCCGGA | 1 cut(s) | 514 |
| AoxI | GGCC | 3 cut(s) | 725, 823, 1147 |
| ApoI | RAATTY | 4 cut(s) | 104, 371, 643, 916 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 302, 334 |
| AsiGI | ACCGGT | 1 cut(s) | 478 |
| AspLEI | GCGC | 1 cut(s) | 568 |
| AspS9I | GGNCC | 1 cut(s) | 725 |
| AsuC2I | CCSGG | 1 cut(s) | 332 |
| AsuHPI | GGTGA | 1 cut(s) | 944 |
| AvaI | CYCGRG | 1 cut(s) | 613 |
| BanI | GGYRCC | 1 cut(s) | 82 |
| BanII | GRGCYC | 2 cut(s) | 331, 752 |
| BbrPI | CACGTG | 1 cut(s) | 688 |
| BccI | CCATC | 6 cut(s) | 57, 373, 382, 410, 701, 995 |
| BceAI | ACGGC | 1 cut(s) | 1134 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 557, 591 |
| BciT130I | CCWGG | 2 cut(s) | 87, 822 |
| BciVI | GTATCC | 1 cut(s) | 1093 |
| BclI | TGATCA | 1 cut(s) | 160 |
| BcnI | CCSGG | 1 cut(s) | 332 |
| BcoDI | GTCTC | 2 cut(s) | 616, 893 |
| BfaI | CTAG | 2 cut(s) | 113, 699 |
| BfmI | CTRYAG | 1 cut(s) | 560 |
| BfuI | GTATCC | 1 cut(s) | 1093 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 335 |
| BisI | GCNGC | 1 cut(s) | 467 |
| BlpI | GCTNAGC | 1 cut(s) | 462 |
| BlsI | GCNGC | 1 cut(s) | 468 |
| Bme1390I | CCNGG | 3 cut(s) | 87, 332, 822 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 608 |
| BmeT110I | CYCGRG | 1 cut(s) | 613 |
| BmgT120I | GGNCC | 1 cut(s) | 725 |
| BmiI | GGNNCC | 1 cut(s) | 84 |
| BmrFI | CCNGG | 3 cut(s) | 87, 332, 822 |
| BmrI | ACTGGG | 2 cut(s) | 752, 1133 |
| BmsI | GCATC | 1 cut(s) | 928 |
| BmuI | ACTGGG | 2 cut(s) | 752, 1133 |
| BoxI | GACNNNNGTC | 1 cut(s) | 973 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 462 |
| BpuMI | CCSGG | 1 cut(s) | 332 |
| BsaAI | YACGTR | 1 cut(s) | 688 |
| BsaBI | GATNNNNATC | 1 cut(s) | 882 |
| BsaHI | GRCGYC | 1 cut(s) | 849 |
| BsaJI | CCNNGG | 3 cut(s) | 240, 330, 961 |
| BsaWI | WCCGGW | 2 cut(s) | 478, 514 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 979, 1009, 1137, 1167 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 338, 485, 734, 1145 |
| Bse118I | RCCGGY | 1 cut(s) | 478 |
| Bse1I | ACTGG | 2 cut(s) | 758, 1139 |
| Bse8I | GATNNNNATC | 1 cut(s) | 882 |
| BseAI | TCCGGA | 1 cut(s) | 514 |
| BseBI | CCWGG | 2 cut(s) | 87, 822 |
| BseDI | CCNNGG | 3 cut(s) | 240, 330, 961 |
| BseGI | GGATG | 3 cut(s) | 250, 586, 1006 |
| BseJI | GATNNNNATC | 1 cut(s) | 882 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 338, 485, 734, 1145 |
| BseMII | CTCAG | 2 cut(s) | 165, 888 |
| BseNI | ACTGG | 2 cut(s) | 758, 1139 |
| BseRI | GAGGAG | 1 cut(s) | 765 |
| BseYI | CCCAGC | 2 cut(s) | 338, 1022 |
| Bsh1236I | CGCG | 2 cut(s) | 984, 1125 |
| BshFI | GGCC | 3 cut(s) | 727, 825, 1149 |
| BshNI | GGYRCC | 1 cut(s) | 82 |
| BshTI | ACCGGT | 1 cut(s) | 478 |
| BsiHKCI | CYCGRG | 1 cut(s) | 613 |
| BsiSI | CCGG | 3 cut(s) | 332, 479, 515 |
| BslFI | GGGAC | 5 cut(s) | 443, 570, 615, 750, 937 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 338, 485, 734, 1145 |
| BsmAI | GTCTC | 2 cut(s) | 616, 893 |
| BsmFI | GGGAC | 5 cut(s) | 443, 570, 615, 750, 937 |
| BsmI | GAATGC | 1 cut(s) | 687 |
| BsnI | GGCC | 3 cut(s) | 727, 825, 1149 |
| BsoBI | CYCGRG | 1 cut(s) | 613 |
| Bsp1286I | GDGCHC | 2 cut(s) | 331, 752 |
| Bsp13I | TCCGGA | 1 cut(s) | 514 |
| Bsp143I | GATC | 1 cut(s) | 160 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 462 |
| Bsp19I | CCATGG | 1 cut(s) | 961 |
| BspACI | CCGC | 6 cut(s) | 455, 466, 469, 630, 984, 1125 |
| BspANI | GGCC | 3 cut(s) | 727, 825, 1149 |
| BspCNI | CTCAG | 2 cut(s) | 166, 889 |
| BspEI | TCCGGA | 1 cut(s) | 514 |
| BspFNI | CGCG | 2 cut(s) | 984, 1125 |
| BspLI | GGNNCC | 1 cut(s) | 84 |
| BspT107I | GGYRCC | 1 cut(s) | 82 |
| BsrFI | RCCGGY | 1 cut(s) | 478 |
| BsrI | ACTGG | 2 cut(s) | 758, 1139 |
| BssAI | RCCGGY | 1 cut(s) | 478 |
| BssECI | CCNNGG | 3 cut(s) | 240, 330, 961 |
| BssMI | GATC | 1 cut(s) | 160 |
| BssNI | GRCGYC | 1 cut(s) | 849 |
| BssT1I | CCWWGG | 2 cut(s) | 240, 961 |
| Bst2UI | CCWGG | 2 cut(s) | 87, 822 |
| Bst4CI | ACNGT | 7 cut(s) | 216, 235, 315, 360, 844, 949, 1078 |
| Bst6I | CTCTTC | 2 cut(s) | 278, 1089 |
| BstACI | GRCGYC | 1 cut(s) | 849 |
| BstBAI | YACGTR | 1 cut(s) | 688 |
| BstC8I | GCNNGC | 5 cut(s) | 327, 459, 540, 632, 765 |
| BstDEI | CTNAG | 4 cut(s) | 174, 443, 462, 897 |
| BstDSI | CCRYGG | 1 cut(s) | 961 |
| BstF5I | GGATG | 3 cut(s) | 250, 586, 1006 |
| BstFNI | CGCG | 2 cut(s) | 984, 1125 |
| BstHHI | GCGC | 1 cut(s) | 568 |
| BstKTI | GATC | 1 cut(s) | 163 |
| BstMAI | GTCTC | 2 cut(s) | 616, 893 |
| BstMBI | GATC | 1 cut(s) | 160 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 335, 463, 472 |
| BstNI | CCWGG | 2 cut(s) | 87, 822 |
| BstNSI | RCATGY | 2 cut(s) | 542, 767 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 973 |
| BstSCI | CCNGG | 3 cut(s) | 85, 330, 820 |
| BstSFI | CTRYAG | 1 cut(s) | 560 |
| BstUI | CGCG | 2 cut(s) | 984, 1125 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 315 |
| BsuI | GTATCC | 1 cut(s) | 1093 |
| BsuRI | GGCC | 3 cut(s) | 727, 825, 1149 |
| BtgI | CCRYGG | 1 cut(s) | 961 |
| BtsCI | GGATG | 3 cut(s) | 250, 586, 1006 |
| BtsIMutI | CAGTG | 4 cut(s) | 320, 765, 849, 1083 |
| Cac8I | GCNNGC | 5 cut(s) | 327, 459, 540, 632, 765 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1022 |
| CfoI | GCGC | 1 cut(s) | 568 |
| Cfr10I | RCCGGY | 1 cut(s) | 478 |
| Cfr13I | GGNCC | 1 cut(s) | 725 |
| CseI | GACGC | 3 cut(s) | 531, 990, 1131 |
| CsiI | ACCWGGT | 1 cut(s) | 85 |
| Csp6I | GTAC | 1 cut(s) | 356 |
| CspAI | ACCGGT | 1 cut(s) | 478 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 946, 981 |
| CviAII | CATG | 4 cut(s) | 164, 539, 764, 962 |
| CviQI | GTAC | 1 cut(s) | 356 |
| DdeI | CTNAG | 4 cut(s) | 174, 443, 462, 897 |
| DpnI | GATC | 1 cut(s) | 162 |
| DpnII | GATC | 1 cut(s) | 160 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1081 |
| DriI | GACNNNNNGTC | 1 cut(s) | 608 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1081 |
| Eam1104I | CTCTTC | 2 cut(s) | 278, 1089 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 608 |
| EarI | CTCTTC | 2 cut(s) | 278, 1089 |
| EciI | GGCGGA | 1 cut(s) | 484 |
| Eco130I | CCWWGG | 2 cut(s) | 240, 961 |
| Eco24I | GRGCYC | 2 cut(s) | 331, 752 |
| Eco72I | CACGTG | 1 cut(s) | 688 |
| Eco88I | CYCGRG | 1 cut(s) | 613 |
| EcoRI | GAATTC | 1 cut(s) | 371 |
| EcoRII | CCWGG | 2 cut(s) | 85, 820 |
| EcoT14I | CCWWGG | 2 cut(s) | 240, 961 |
| EcoT38I | GRGCYC | 2 cut(s) | 331, 752 |
| ErhI | CCWWGG | 2 cut(s) | 240, 961 |
| FaeI | CATG | 4 cut(s) | 167, 542, 767, 965 |
| FaqI | GGGAC | 5 cut(s) | 443, 570, 615, 750, 937 |
| FatI | CATG | 4 cut(s) | 163, 538, 763, 961 |
| FauI | CCCGC | 2 cut(s) | 623, 977 |
| FbaI | TGATCA | 1 cut(s) | 160 |
| Fnu4HI | GCNGC | 1 cut(s) | 467 |
| FokI | GGATG | 3 cut(s) | 257, 593, 1013 |
| FriOI | GRGCYC | 2 cut(s) | 331, 752 |
| Fsp4HI | GCNGC | 1 cut(s) | 467 |
| FspBI | CTAG | 2 cut(s) | 113, 699 |
| GlaI | GCGC | 1 cut(s) | 567 |
| GluI | GCNGC | 1 cut(s) | 467 |
| GsaI | CCCAGC | 2 cut(s) | 342, 1026 |
| HaeIII | GGCC | 3 cut(s) | 727, 825, 1149 |
| HapII | CCGG | 3 cut(s) | 332, 479, 515 |
| HgaI | GACGC | 3 cut(s) | 531, 990, 1131 |
| HhaI | GCGC | 1 cut(s) | 568 |
| Hin1I | GRCGYC | 1 cut(s) | 849 |
| Hin1II | CATG | 4 cut(s) | 167, 542, 767, 965 |
| Hin6I | GCGC | 1 cut(s) | 566 |
| HinP1I | GCGC | 1 cut(s) | 566 |
| HinfI | GANTC | 7 cut(s) | 422, 497, 595, 770, 878, 974, 1159 |
| HpaII | CCGG | 3 cut(s) | 332, 479, 515 |
| HphI | GGTGA | 1 cut(s) | 944 |
| Hpy166II | GTNNAC | 4 cut(s) | 46, 787, 847, 968 |
| Hpy188I | TCNGA | 6 cut(s) | 221, 547, 754, 780, 1047, 1087 |
| Hpy188III | TCNNGA | 8 cut(s) | 113, 376, 515, 555, 578, 613, 654, 978 |
| Hpy8I | GTNNAC | 4 cut(s) | 46, 787, 847, 968 |
| Hpy99I | CGWCG | 2 cut(s) | 984, 1125 |
| HpyAV | CCTTC | 4 cut(s) | 147, 188, 1052, 1084 |
| HpyCH4III | ACNGT | 7 cut(s) | 216, 235, 315, 360, 844, 949, 1078 |
| HpyCH4IV | ACGT | 5 cut(s) | 124, 223, 687, 849, 926 |
| HpyCH4V | TGCA | 7 cut(s) | 94, 187, 674, 685, 763, 941, 957 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 335, 463, 472 |
| HpyF3I | CTNAG | 4 cut(s) | 174, 443, 462, 897 |
| HpySE526I | ACGT | 5 cut(s) | 124, 223, 687, 849, 926 |
| Hsp92I | GRCGYC | 1 cut(s) | 849 |
| Hsp92II | CATG | 4 cut(s) | 167, 542, 767, 965 |
| HspAI | GCGC | 1 cut(s) | 566 |
| Kpn2I | TCCGGA | 1 cut(s) | 514 |
| Ksp22I | TGATCA | 1 cut(s) | 160 |
| Kzo9I | GATC | 1 cut(s) | 160 |
| LmnI | GCTCC | 3 cut(s) | 382, 517, 1031 |
| LweI | GCATC | 1 cut(s) | 928 |
| MabI | ACCWGGT | 1 cut(s) | 85 |
| MaeI | CTAG | 2 cut(s) | 113, 699 |
| MaeII | ACGT | 5 cut(s) | 124, 223, 687, 849, 926 |
| MaeIII | GTNAC | 2 cut(s) | 688, 975 |
| MalI | GATC | 1 cut(s) | 162 |
| MboI | GATC | 1 cut(s) | 160 |
| MboII | GAAGA | 6 cut(s) | 221, 295, 887, 1067, 1106, 1179 |
| MfeI | CAATTG | 1 cut(s) | 272 |
| MhlI | GDGCHC | 2 cut(s) | 331, 752 |
| MluCI | AATT | 8 cut(s) | 104, 272, 371, 402, 548, 585, 643, 916 |
| MlyI | GAGTC | 3 cut(s) | 431, 506, 983 |
| MmeI | TCCRAC | 3 cut(s) | 206, 373, 1123 |
| MroI | TCCGGA | 1 cut(s) | 514 |
| MslI | CAYNNNNRTG | 1 cut(s) | 168 |
| MspA1I | CMGCKG | 1 cut(s) | 457 |
| MspI | CCGG | 3 cut(s) | 332, 479, 515 |
| MspR9I | CCNGG | 3 cut(s) | 87, 332, 822 |
| MunI | CAATTG | 1 cut(s) | 272 |
| Mva1269I | GAATGC | 1 cut(s) | 687 |
| MvaI | CCWGG | 2 cut(s) | 87, 822 |
| MvnI | CGCG | 2 cut(s) | 984, 1125 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 335, 463, 472 |
| NciI | CCSGG | 1 cut(s) | 332 |
| NcoI | CCATGG | 1 cut(s) | 961 |
| NdeII | GATC | 1 cut(s) | 160 |
| NlaIII | CATG | 4 cut(s) | 167, 542, 767, 965 |
| NlaIV | GGNNCC | 1 cut(s) | 84 |
| NmuCI | GTSAC | 2 cut(s) | 688, 975 |
| NspI | RCATGY | 2 cut(s) | 542, 767 |
| PaeI | GCATGC | 2 cut(s) | 542, 767 |
| PaeR7I | CTCGAG | 1 cut(s) | 613 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 220 |
| PctI | GAATGC | 1 cut(s) | 687 |
| PfeI | GAWTC | 4 cut(s) | 595, 770, 878, 1159 |
| PflFI | GACNNNGTC | 2 cut(s) | 235, 496 |
| PinAI | ACCGGT | 1 cut(s) | 478 |
| PkrI | GCNGC | 1 cut(s) | 468 |
| PleI | GAGTC | 3 cut(s) | 430, 505, 982 |
| PmaCI | CACGTG | 1 cut(s) | 688 |
| PmlI | CACGTG | 1 cut(s) | 688 |
| PpsI | GAGTC | 3 cut(s) | 430, 505, 982 |
| Ppu21I | YACGTR | 1 cut(s) | 688 |
| PshAI | GACNNNNGTC | 1 cut(s) | 973 |
| Psp6I | CCWGG | 2 cut(s) | 85, 820 |
| PspCI | CACGTG | 1 cut(s) | 688 |
| PspFI | CCCAGC | 2 cut(s) | 338, 1022 |
| PspGI | CCWGG | 2 cut(s) | 85, 820 |
| PspN4I | GGNNCC | 1 cut(s) | 84 |
| PspPI | GGNCC | 1 cut(s) | 725 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1022 |
| PsyI | GACNNNGTC | 2 cut(s) | 235, 496 |
| RsaI | GTAC | 1 cut(s) | 357 |
| RsaNI | GTAC | 1 cut(s) | 356 |
| RseI | CAYNNNNRTG | 1 cut(s) | 168 |
| SatI | GCNGC | 1 cut(s) | 467 |
| Sau3AI | GATC | 1 cut(s) | 160 |
| Sau96I | GGNCC | 1 cut(s) | 725 |
| SchI | GAGTC | 3 cut(s) | 431, 506, 983 |
| ScrFI | CCNGG | 3 cut(s) | 87, 332, 822 |
| SduI | GDGCHC | 2 cut(s) | 331, 752 |
| SexAI | ACCWGGT | 1 cut(s) | 85 |
| SfaNI | GCATC | 1 cut(s) | 928 |
| SfcI | CTRYAG | 1 cut(s) | 560 |
| Sfr274I | CTCGAG | 1 cut(s) | 613 |
| SlaI | CTCGAG | 1 cut(s) | 613 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 168 |
| SmlI | CTYRAG | 1 cut(s) | 613 |
| SmoI | CTYRAG | 1 cut(s) | 613 |
| SphI | GCATGC | 2 cut(s) | 542, 767 |
| Sse9I | AATT | 8 cut(s) | 104, 272, 371, 402, 548, 585, 643, 916 |
| SsiI | CCGC | 6 cut(s) | 455, 466, 469, 630, 984, 1125 |
| SspMI | CTAG | 2 cut(s) | 113, 699 |
| StyD4I | CCNGG | 3 cut(s) | 85, 330, 820 |
| StyI | CCWWGG | 2 cut(s) | 240, 961 |
| TaaI | ACNGT | 7 cut(s) | 216, 235, 315, 360, 844, 949, 1078 |
| TaiI | ACGT | 5 cut(s) | 127, 226, 690, 852, 929 |
| TaqI | TCGA | 5 cut(s) | 258, 375, 614, 873, 1162 |
| TasI | AATT | 8 cut(s) | 104, 272, 371, 402, 548, 585, 643, 916 |
| TauI | GCSGC | 1 cut(s) | 469 |
| TfiI | GAWTC | 4 cut(s) | 595, 770, 878, 1159 |
| TscAI | CASTG | 4 cut(s) | 320, 765, 849, 1083 |
| TseFI | GTSAC | 2 cut(s) | 688, 975 |
| Tsp45I | GTSAC | 2 cut(s) | 688, 975 |
| TspDTI | ATGAA | 2 cut(s) | 135, 597 |
| TspGWI | ACGGA | 3 cut(s) | 73, 509, 1067 |
| TspRI | CASTG | 4 cut(s) | 320, 765, 849, 1083 |
| Tth111I | GACNNNGTC | 2 cut(s) | 235, 496 |
| XapI | RAATTY | 4 cut(s) | 104, 371, 643, 916 |
| XbaI | TCTAGA | 1 cut(s) | 112 |
| XceI | RCATGY | 2 cut(s) | 542, 767 |
| XhoI | CTCGAG | 1 cut(s) | 613 |
| XspI | CTAG | 2 cut(s) | 113, 699 |
| ZraI | GACGTC | 1 cut(s) | 850 |