ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 1 - 48 | 2e-11 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 123 |
| AcsI | RAATTY | 1 cut(s) | 209 |
| AleI | CACNNNNGTG | 1 cut(s) | 35 |
| AluBI | AGCT | 1 cut(s) | 287 |
| AluI | AGCT | 1 cut(s) | 287 |
| ApoI | RAATTY | 1 cut(s) | 209 |
| AspLEI | GCGC | 1 cut(s) | 30 |
| AsuHPI | GGTGA | 1 cut(s) | 275 |
| BaeGI | GKGCMC | 1 cut(s) | 126 |
| BanI | GGYRCC | 1 cut(s) | 123 |
| BccI | CCATC | 1 cut(s) | 260 |
| BfaI | CTAG | 3 cut(s) | 132, 288, 348 |
| BmiI | GGNNCC | 1 cut(s) | 125 |
| BmsI | GCATC | 1 cut(s) | 138 |
| BsaAI | YACGTR | 1 cut(s) | 92 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 228, 258 |
| Bse1I | ACTGG | 1 cut(s) | 319 |
| BseNI | ACTGG | 1 cut(s) | 319 |
| BseSI | GKGCMC | 1 cut(s) | 126 |
| BshNI | GGYRCC | 1 cut(s) | 123 |
| BsmI | GAATGC | 1 cut(s) | 156 |
| Bsp1286I | GDGCHC | 1 cut(s) | 126 |
| BspLI | GGNNCC | 1 cut(s) | 125 |
| BspT107I | GGYRCC | 1 cut(s) | 123 |
| BsrI | ACTGG | 1 cut(s) | 319 |
| Bst4CI | ACNGT | 2 cut(s) | 34, 191 |
| Bst6I | CTCTTC | 1 cut(s) | 24 |
| BstBAI | YACGTR | 1 cut(s) | 92 |
| BstDEI | CTNAG | 2 cut(s) | 23, 200 |
| BstHHI | GCGC | 1 cut(s) | 30 |
| BstSLI | GKGCMC | 1 cut(s) | 126 |
| BtsI | GCAGTG | 1 cut(s) | 280 |
| BtsIMutI | CAGTG | 2 cut(s) | 30, 280 |
| CfoI | GCGC | 1 cut(s) | 30 |
| CviAII | CATG | 1 cut(s) | 221 |
| CviJI | RGCY | 3 cut(s) | 206, 287, 306 |
| CviKI_1 | RGCY | 3 cut(s) | 206, 287, 306 |
| DdeI | CTNAG | 2 cut(s) | 23, 200 |
| DraI | TTTAAA | 1 cut(s) | 76 |
| Eam1104I | CTCTTC | 1 cut(s) | 24 |
| EarI | CTCTTC | 1 cut(s) | 24 |
| EcoT22I | ATGCAT | 1 cut(s) | 222 |
| FaeI | CATG | 1 cut(s) | 224 |
| FaiI | YATR | 6 cut(s) | 8, 81, 116, 218, 222, 261 |
| FatI | CATG | 1 cut(s) | 220 |
| FspBI | CTAG | 3 cut(s) | 132, 288, 348 |
| GlaI | GCGC | 1 cut(s) | 29 |
| HhaI | GCGC | 1 cut(s) | 30 |
| Hin1II | CATG | 1 cut(s) | 224 |
| Hin6I | GCGC | 1 cut(s) | 28 |
| HinP1I | GCGC | 1 cut(s) | 28 |
| HinfI | GANTC | 2 cut(s) | 135, 293 |
| HphI | GGTGA | 1 cut(s) | 275 |
| Hpy188III | TCNNGA | 1 cut(s) | 104 |
| HpyAV | CCTTC | 1 cut(s) | 163 |
| HpyCH4III | ACNGT | 2 cut(s) | 34, 191 |
| HpyCH4IV | ACGT | 1 cut(s) | 91 |
| HpyCH4V | TGCA | 1 cut(s) | 220 |
| HpyF3I | CTNAG | 2 cut(s) | 23, 200 |
| HpySE526I | ACGT | 1 cut(s) | 91 |
| Hsp92II | CATG | 1 cut(s) | 224 |
| HspAI | GCGC | 1 cut(s) | 28 |
| LpnPI | CCDG | 3 cut(s) | 33, 214, 300 |
| LweI | GCATC | 1 cut(s) | 138 |
| MaeI | CTAG | 3 cut(s) | 132, 288, 348 |
| MaeII | ACGT | 1 cut(s) | 91 |
| MboII | GAAGA | 2 cut(s) | 11, 185 |
| MhlI | GDGCHC | 1 cut(s) | 126 |
| MluCI | AATT | 1 cut(s) | 209 |
| MnlI | CCTC | 5 cut(s) | 27, 58, 245, 263, 317 |
| Mph1103I | ATGCAT | 1 cut(s) | 222 |
| MseI | TTAA | 1 cut(s) | 75 |
| MslI | CAYNNNNRTG | 2 cut(s) | 35, 90 |
| Mva1269I | GAATGC | 1 cut(s) | 156 |
| NlaIII | CATG | 1 cut(s) | 224 |
| NlaIV | GGNNCC | 1 cut(s) | 125 |
| NsiI | ATGCAT | 1 cut(s) | 222 |
| OliI | CACNNNNGTG | 1 cut(s) | 35 |
| PctI | GAATGC | 1 cut(s) | 156 |
| PfeI | GAWTC | 2 cut(s) | 135, 293 |
| Ppu21I | YACGTR | 1 cut(s) | 92 |
| PspN4I | GGNNCC | 1 cut(s) | 125 |
| RseI | CAYNNNNRTG | 2 cut(s) | 35, 90 |
| SaqAI | TTAA | 1 cut(s) | 75 |
| SduI | GDGCHC | 1 cut(s) | 126 |
| SetI | ASST | 3 cut(s) | 69, 94, 289 |
| SfaNI | GCATC | 1 cut(s) | 138 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 35, 90 |
| Sse9I | AATT | 1 cut(s) | 209 |
| SspMI | CTAG | 3 cut(s) | 132, 288, 348 |
| TaaI | ACNGT | 2 cut(s) | 34, 191 |
| TaiI | ACGT | 1 cut(s) | 94 |
| TaqI | TCGA | 1 cut(s) | 250 |
| TasI | AATT | 1 cut(s) | 209 |
| TfiI | GAWTC | 2 cut(s) | 135, 293 |
| Tru1I | TTAA | 1 cut(s) | 75 |
| Tru9I | TTAA | 1 cut(s) | 75 |
| TscAI | CASTG | 2 cut(s) | 37, 280 |
| TspDTI | ATGAA | 1 cut(s) | 96 |
| TspRI | CASTG | 2 cut(s) | 37, 280 |
| XapI | RAATTY | 1 cut(s) | 209 |
| XspI | CTAG | 3 cut(s) | 132, 288, 348 |
| Zsp2I | ATGCAT | 1 cut(s) | 222 |