Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 409 |
| Acc36I | ACCTGC | 1 cut(s) | 409 |
| AccB1I | GGYRCC | 1 cut(s) | 30 |
| AccBSI | CCGCTC | 2 cut(s) | 103, 350 |
| AciI | CCGC | 3 cut(s) | 103, 350, 900 |
| AclWI | GGATC | 3 cut(s) | 74, 87, 578 |
| AcsI | RAATTY | 2 cut(s) | 829, 938 |
| AcuI | CTGAAG | 1 cut(s) | 296 |
| AcyI | GRCGYC | 1 cut(s) | 31 |
| AfaI | GTAC | 1 cut(s) | 681 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1101 |
| AflIII | ACRYGT | 1 cut(s) | 663 |
| AgeI | ACCGGT | 1 cut(s) | 422 |
| AgsI | TTSAA | 2 cut(s) | 755, 884 |
| AhlI | ACTAGT | 1 cut(s) | 797 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 89, 121 |
| Alw21I | GWGCWC | 1 cut(s) | 851 |
| Alw26I | GTCTC | 2 cut(s) | 358, 788 |
| AlwI | GGATC | 3 cut(s) | 74, 87, 578 |
| Ama87I | CYCGRG | 1 cut(s) | 1094 |
| AoxI | GGCC | 1 cut(s) | 1104 |
| ApaI | GGGCCC | 1 cut(s) | 1108 |
| ApeKI | GCWGC | 1 cut(s) | 506 |
| ApoI | RAATTY | 2 cut(s) | 829, 938 |
| AsiGI | ACCGGT | 1 cut(s) | 422 |
| AspLEI | GCGC | 2 cut(s) | 33, 609 |
| AspS9I | GGNCC | 3 cut(s) | 495, 1104, 1105 |
| AsuHPI | GGTGA | 3 cut(s) | 269, 547, 981 |
| AvaI | CYCGRG | 1 cut(s) | 1094 |
| AvaII | GGWCC | 1 cut(s) | 495 |
| BaeGI | GKGCMC | 1 cut(s) | 1108 |
| BamHI | GGATCC | 1 cut(s) | 79 |
| BanI | GGYRCC | 1 cut(s) | 30 |
| BanII | GRGCYC | 2 cut(s) | 396, 1108 |
| BbsI | GAAGAC | 1 cut(s) | 191 |
| Bbv12I | GWGCWC | 1 cut(s) | 851 |
| BbvI | GCAGC | 1 cut(s) | 493 |
| BccI | CCATC | 4 cut(s) | 323, 328, 469, 706 |
| BceAI | ACGGC | 1 cut(s) | 347 |
| BcoDI | GTCTC | 2 cut(s) | 358, 788 |
| BcuI | ACTAGT | 1 cut(s) | 797 |
| BfaI | CTAG | 6 cut(s) | 387, 492, 510, 798, 875, 993 |
| BfmI | CTRYAG | 1 cut(s) | 1065 |
| BfoI | RGCGCY | 2 cut(s) | 34, 610 |
| BfuAI | ACCTGC | 1 cut(s) | 409 |
| BisI | GCNGC | 1 cut(s) | 507 |
| BlsI | GCNGC | 1 cut(s) | 508 |
| Bme18I | GGWCC | 1 cut(s) | 495 |
| BmeT110I | CYCGRG | 1 cut(s) | 1094 |
| BmgT120I | GGNCC | 3 cut(s) | 495, 1104, 1105 |
| BmiI | GGNNCC | 4 cut(s) | 32, 81, 395, 1106 |
| BpiI | GAAGAC | 1 cut(s) | 191 |
| BpmI | CTGGAG | 2 cut(s) | 80, 366 |
| BpuEI | CTTGAG | 1 cut(s) | 190 |
| Bsa29I | ATCGAT | 1 cut(s) | 229 |
| BsaAI | YACGTR | 1 cut(s) | 683 |
| BsaHI | GRCGYC | 1 cut(s) | 31 |
| BsaI | GGTCTC | 1 cut(s) | 358 |
| BsaJI | CCNNGG | 4 cut(s) | 189, 287, 589, 1095 |
| BsaWI | WCCGGW | 2 cut(s) | 135, 422 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1101 |
| Bse118I | RCCGGY | 1 cut(s) | 422 |
| Bse1I | ACTGG | 1 cut(s) | 63 |
| BseCI | ATCGAT | 1 cut(s) | 229 |
| BseDI | CCNNGG | 4 cut(s) | 189, 287, 589, 1095 |
| BseGI | GGATG | 4 cut(s) | 103, 339, 480, 574 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1101 |
| BseMII | CTCAG | 2 cut(s) | 243, 962 |
| BseNI | ACTGG | 1 cut(s) | 63 |
| BseRI | GAGGAG | 3 cut(s) | 65, 454, 1112 |
| BseSI | GKGCMC | 1 cut(s) | 1108 |
| BseXI | GCAGC | 1 cut(s) | 493 |
| BseYI | CCCAGC | 1 cut(s) | 1043 |
| BshFI | GGCC | 1 cut(s) | 1106 |
| BshNI | GGYRCC | 1 cut(s) | 30 |
| BshTI | ACCGGT | 1 cut(s) | 422 |
| BshVI | ATCGAT | 1 cut(s) | 229 |
| BsiHKAI | GWGCWC | 1 cut(s) | 851 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1094 |
| BsiSI | CCGG | 2 cut(s) | 136, 423 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1101 |
| BsmAI | GTCTC | 2 cut(s) | 358, 788 |
| BsnI | GGCC | 1 cut(s) | 1106 |
| Bso31I | GGTCTC | 1 cut(s) | 358 |
| BsoBI | CYCGRG | 1 cut(s) | 1094 |
| Bsp120I | GGGCCC | 1 cut(s) | 1104 |
| Bsp1286I | GDGCHC | 3 cut(s) | 396, 851, 1108 |
| Bsp143I | GATC | 3 cut(s) | 79, 226, 583 |
| Bsp19I | CCATGG | 2 cut(s) | 287, 589 |
| BspACI | CCGC | 3 cut(s) | 103, 350, 900 |
| BspANI | GGCC | 1 cut(s) | 1106 |
| BspCNI | CTCAG | 2 cut(s) | 244, 961 |
| BspDI | ATCGAT | 1 cut(s) | 229 |
| BspLI | GGNNCC | 4 cut(s) | 32, 81, 395, 1106 |
| BspMI | ACCTGC | 1 cut(s) | 409 |
| BspPI | GGATC | 3 cut(s) | 74, 87, 578 |
| BspT107I | GGYRCC | 1 cut(s) | 30 |
| BspTNI | GGTCTC | 1 cut(s) | 358 |
| BsrBI | CCGCTC | 2 cut(s) | 103, 350 |
| BsrFI | RCCGGY | 1 cut(s) | 422 |
| BsrI | ACTGG | 1 cut(s) | 63 |
| BssAI | RCCGGY | 1 cut(s) | 422 |
| BssECI | CCNNGG | 4 cut(s) | 189, 287, 589, 1095 |
| BssMI | GATC | 3 cut(s) | 79, 226, 583 |
| BssNI | GRCGYC | 1 cut(s) | 31 |
| BssT1I | CCWWGG | 3 cut(s) | 189, 287, 589 |
| Bst4CI | ACNGT | 5 cut(s) | 73, 142, 549, 759, 1069 |
| BstACI | GRCGYC | 1 cut(s) | 31 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 271 |
| BstBAI | YACGTR | 1 cut(s) | 683 |
| BstDEI | CTNAG | 4 cut(s) | 252, 564, 948, 1020 |
| BstDSI | CCRYGG | 2 cut(s) | 287, 589 |
| BstF5I | GGATG | 4 cut(s) | 103, 339, 480, 574 |
| BstH2I | RGCGCY | 2 cut(s) | 34, 610 |
| BstHHI | GCGC | 2 cut(s) | 33, 609 |
| BstKTI | GATC | 3 cut(s) | 82, 229, 586 |
| BstMAI | GTCTC | 2 cut(s) | 358, 788 |
| BstMBI | GATC | 3 cut(s) | 79, 226, 583 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 109, 271, 311, 952 |
| BstNSI | RCATGY | 1 cut(s) | 667 |
| BstSFI | CTRYAG | 1 cut(s) | 1065 |
| BstSLI | GKGCMC | 1 cut(s) | 1108 |
| BstV1I | GCAGC | 1 cut(s) | 493 |
| BstV2I | GAAGAC | 1 cut(s) | 191 |
| BstX2I | RGATCY | 1 cut(s) | 79 |
| BstYI | RGATCY | 1 cut(s) | 79 |
| Bsu15I | ATCGAT | 1 cut(s) | 229 |
| BsuRI | GGCC | 1 cut(s) | 1106 |
| BsuTUI | ATCGAT | 1 cut(s) | 229 |
| BtgI | CCRYGG | 2 cut(s) | 287, 589 |
| BtsCI | GGATG | 4 cut(s) | 103, 339, 480, 574 |
| BtsIMutI | CAGTG | 2 cut(s) | 764, 1074 |
| BveI | ACCTGC | 1 cut(s) | 409 |
| CfoI | GCGC | 2 cut(s) | 33, 609 |
| Cfr10I | RCCGGY | 1 cut(s) | 422 |
| Cfr13I | GGNCC | 3 cut(s) | 495, 1104, 1105 |
| ClaI | ATCGAT | 1 cut(s) | 229 |
| Csp6I | GTAC | 1 cut(s) | 680 |
| CspAI | ACCGGT | 1 cut(s) | 422 |
| CviAII | CATG | 5 cut(s) | 288, 590, 664, 746, 764 |
| CviJI | RGCY | 4 cut(s) | 112, 314, 394, 1106 |
| CviKI_1 | RGCY | 4 cut(s) | 112, 314, 394, 1106 |
| CviQI | GTAC | 1 cut(s) | 680 |
| DdeI | CTNAG | 4 cut(s) | 252, 564, 948, 1020 |
| DinI | GGCGCC | 1 cut(s) | 32 |
| DpnI | GATC | 3 cut(s) | 81, 228, 585 |
| DpnII | GATC | 3 cut(s) | 79, 226, 583 |
| DraI | TTTAAA | 1 cut(s) | 247 |
| EciI | GGCGGA | 1 cut(s) | 915 |
| Eco130I | CCWWGG | 3 cut(s) | 189, 287, 589 |
| Eco24I | GRGCYC | 2 cut(s) | 396, 1108 |
| Eco31I | GGTCTC | 1 cut(s) | 358 |
| Eco47I | GGWCC | 1 cut(s) | 495 |
| Eco57I | CTGAAG | 1 cut(s) | 296 |
| Eco88I | CYCGRG | 1 cut(s) | 1094 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1104 |
| EcoT14I | CCWWGG | 3 cut(s) | 189, 287, 589 |
| EcoT38I | GRGCYC | 2 cut(s) | 396, 1108 |
| EgeI | GGCGCC | 1 cut(s) | 32 |
| EheI | GGCGCC | 1 cut(s) | 32 |
| ErhI | CCWWGG | 3 cut(s) | 189, 287, 589 |
| FaeI | CATG | 5 cut(s) | 291, 593, 667, 749, 767 |
| FatI | CATG | 5 cut(s) | 287, 589, 663, 745, 763 |
| Fnu4HI | GCNGC | 1 cut(s) | 507 |
| FokI | GGATG | 4 cut(s) | 110, 346, 487, 581 |
| FriOI | GRGCYC | 2 cut(s) | 396, 1108 |
| Fsp4HI | GCNGC | 1 cut(s) | 507 |
| FspBI | CTAG | 6 cut(s) | 387, 492, 510, 798, 875, 993 |
| GlaI | GCGC | 2 cut(s) | 32, 608 |
| GluI | GCNGC | 1 cut(s) | 507 |
| GsaI | CCCAGC | 1 cut(s) | 1047 |
| GsuI | CTGGAG | 2 cut(s) | 80, 366 |
| HaeII | RGCGCY | 2 cut(s) | 34, 610 |
| HaeIII | GGCC | 1 cut(s) | 1106 |
| HapII | CCGG | 2 cut(s) | 136, 423 |
| HhaI | GCGC | 2 cut(s) | 33, 609 |
| Hin1I | GRCGYC | 1 cut(s) | 31 |
| Hin1II | CATG | 5 cut(s) | 291, 593, 667, 749, 767 |
| Hin6I | GCGC | 2 cut(s) | 31, 607 |
| HinP1I | GCGC | 2 cut(s) | 31, 607 |
| HincII | GTYRAC | 1 cut(s) | 340 |
| HindII | GTYRAC | 1 cut(s) | 340 |
| HinfI | GANTC | 3 cut(s) | 152, 341, 379 |
| HpaII | CCGG | 2 cut(s) | 136, 423 |
| HphI | GGTGA | 3 cut(s) | 269, 547, 981 |
| Hpy166II | GTNNAC | 2 cut(s) | 340, 989 |
| Hpy188I | TCNGA | 7 cut(s) | 84, 226, 328, 621, 658, 733, 951 |
| Hpy188III | TCNNGA | 4 cut(s) | 160, 169, 345, 376 |
| Hpy8I | GTNNAC | 2 cut(s) | 340, 989 |
| HpyAV | CCTTC | 7 cut(s) | 271, 643, 689, 771, 878, 890, 1030 |
| HpyCH4III | ACNGT | 5 cut(s) | 73, 142, 549, 759, 1069 |
| HpyCH4IV | ACGT | 1 cut(s) | 682 |
| HpyCH4V | TGCA | 1 cut(s) | 745 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 109, 271, 311, 952 |
| HpyF3I | CTNAG | 4 cut(s) | 252, 564, 948, 1020 |
| HpySE526I | ACGT | 1 cut(s) | 682 |
| Hsp92I | GRCGYC | 1 cut(s) | 31 |
| Hsp92II | CATG | 5 cut(s) | 291, 593, 667, 749, 767 |
| HspAI | GCGC | 2 cut(s) | 31, 607 |
| KasI | GGCGCC | 1 cut(s) | 30 |
| Kzo9I | GATC | 3 cut(s) | 79, 226, 583 |
| LmnI | GCTCC | 4 cut(s) | 347, 399, 441, 846 |
| Lsp1109I | GCAGC | 1 cut(s) | 493 |
| MaeI | CTAG | 6 cut(s) | 387, 492, 510, 798, 875, 993 |
| MaeII | ACGT | 1 cut(s) | 682 |
| MaeIII | GTNAC | 3 cut(s) | 257, 597, 783 |
| MalI | GATC | 3 cut(s) | 81, 228, 585 |
| MbiI | CCGCTC | 2 cut(s) | 103, 350 |
| MboI | GATC | 3 cut(s) | 79, 226, 583 |
| MboII | GAAGA | 5 cut(s) | 17, 196, 704, 946, 1065 |
| MfeI | CAATTG | 1 cut(s) | 499 |
| MflI | RGATCY | 1 cut(s) | 79 |
| MhlI | GDGCHC | 3 cut(s) | 396, 851, 1108 |
| MluCI | AATT | 4 cut(s) | 499, 524, 829, 938 |
| Mly113I | GGCGCC | 1 cut(s) | 31 |
| MlyI | GAGTC | 2 cut(s) | 161, 335 |
| MmeI | TCCRAC | 2 cut(s) | 156, 495 |
| MseI | TTAA | 2 cut(s) | 246, 527 |
| MspI | CCGG | 2 cut(s) | 136, 423 |
| MunI | CAATTG | 1 cut(s) | 499 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 109, 271, 311, 952 |
| NarI | GGCGCC | 1 cut(s) | 31 |
| NcoI | CCATGG | 2 cut(s) | 287, 589 |
| NdeII | GATC | 3 cut(s) | 79, 226, 583 |
| NlaIII | CATG | 5 cut(s) | 291, 593, 667, 749, 767 |
| NlaIV | GGNNCC | 4 cut(s) | 32, 81, 395, 1106 |
| NmeAIII | GCCGAG | 1 cut(s) | 7 |
| NmuCI | GTSAC | 1 cut(s) | 257 |
| NspI | RCATGY | 1 cut(s) | 667 |
| PaqCI | CACCTGC | 1 cut(s) | 409 |
| PciI | ACATGT | 1 cut(s) | 663 |
| PfeI | GAWTC | 1 cut(s) | 379 |
| PinAI | ACCGGT | 1 cut(s) | 422 |
| PkrI | GCNGC | 1 cut(s) | 508 |
| PleI | GAGTC | 2 cut(s) | 160, 335 |
| PluTI | GGCGCC | 1 cut(s) | 34 |
| PpsI | GAGTC | 2 cut(s) | 160, 335 |
| Ppu21I | YACGTR | 1 cut(s) | 683 |
| PscI | ACATGT | 1 cut(s) | 663 |
| PspFI | CCCAGC | 1 cut(s) | 1043 |
| PspN4I | GGNNCC | 4 cut(s) | 32, 81, 395, 1106 |
| PspOMI | GGGCCC | 1 cut(s) | 1104 |
| PspPI | GGNCC | 3 cut(s) | 495, 1104, 1105 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 708, 740 |
| PsuI | RGATCY | 1 cut(s) | 79 |
| RsaI | GTAC | 1 cut(s) | 681 |
| RsaNI | GTAC | 1 cut(s) | 680 |
| SaqAI | TTAA | 2 cut(s) | 246, 527 |
| SatI | GCNGC | 1 cut(s) | 507 |
| Sau3AI | GATC | 3 cut(s) | 79, 226, 583 |
| Sau96I | GGNCC | 3 cut(s) | 495, 1104, 1105 |
| SchI | GAGTC | 2 cut(s) | 161, 335 |
| SduI | GDGCHC | 3 cut(s) | 396, 851, 1108 |
| SfcI | CTRYAG | 1 cut(s) | 1065 |
| SfoI | GGCGCC | 1 cut(s) | 32 |
| SinI | GGWCC | 1 cut(s) | 495 |
| SmlI | CTYRAG | 1 cut(s) | 169 |
| SmoI | CTYRAG | 1 cut(s) | 169 |
| SpeI | ACTAGT | 1 cut(s) | 797 |
| Sse9I | AATT | 4 cut(s) | 499, 524, 829, 938 |
| SsiI | CCGC | 3 cut(s) | 103, 350, 900 |
| SspDI | GGCGCC | 1 cut(s) | 30 |
| SspMI | CTAG | 6 cut(s) | 387, 492, 510, 798, 875, 993 |
| StyI | CCWWGG | 3 cut(s) | 189, 287, 589 |
| TaaI | ACNGT | 5 cut(s) | 73, 142, 549, 759, 1069 |
| TaiI | ACGT | 1 cut(s) | 685 |
| TaqI | TCGA | 2 cut(s) | 229, 770 |
| TasI | AATT | 4 cut(s) | 499, 524, 829, 938 |
| TfiI | GAWTC | 1 cut(s) | 379 |
| Tru1I | TTAA | 2 cut(s) | 246, 527 |
| Tru9I | TTAA | 2 cut(s) | 246, 527 |
| TscAI | CASTG | 2 cut(s) | 764, 1074 |
| TseFI | GTSAC | 1 cut(s) | 257 |
| TseI | GCWGC | 1 cut(s) | 506 |
| Tsp45I | GTSAC | 1 cut(s) | 257 |
| TspDTI | ATGAA | 2 cut(s) | 662, 716 |
| TspGWI | ACGGA | 4 cut(s) | 501, 545, 866, 1094 |
| TspRI | CASTG | 2 cut(s) | 764, 1074 |
| VpaK11BI | GGWCC | 1 cut(s) | 495 |
| XapI | RAATTY | 2 cut(s) | 829, 938 |
| XceI | RCATGY | 1 cut(s) | 667 |
| XspI | CTAG | 6 cut(s) | 387, 492, 510, 798, 875, 993 |