ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 475 |
| AccII | CGCG | 1 cut(s) | 614 |
| AciI | CCGC | 6 cut(s) | 145, 577, 601, 614, 640, 664 |
| AclWI | GGATC | 3 cut(s) | 394, 640, 653 |
| AcsI | RAATTY | 2 cut(s) | 329, 353 |
| AcyI | GRCGYC | 1 cut(s) | 490 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 144, 282, 342, 486 |
| AflII | CTTAAG | 1 cut(s) | 770 |
| AgsI | TTSAA | 2 cut(s) | 94, 522 |
| AjnI | CCWGG | 1 cut(s) | 137 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 672, 704 |
| Alw26I | GTCTC | 4 cut(s) | 309, 416, 458, 665 |
| AlwI | GGATC | 3 cut(s) | 394, 640, 653 |
| Ama87I | CYCGRG | 1 cut(s) | 802 |
| AoxI | GGCC | 3 cut(s) | 67, 272, 369 |
| ApoI | RAATTY | 2 cut(s) | 329, 353 |
| AseI | ATTAAT | 1 cut(s) | 396 |
| AspLEI | GCGC | 1 cut(s) | 626 |
| AspS9I | GGNCC | 3 cut(s) | 68, 118, 273 |
| AsuC2I | CCSGG | 2 cut(s) | 655, 786 |
| AsuHPI | GGTGA | 6 cut(s) | 50, 188, 325, 439, 521, 523 |
| AvaI | CYCGRG | 1 cut(s) | 802 |
| AvaII | GGWCC | 1 cut(s) | 118 |
| BaeGI | GKGCMC | 2 cut(s) | 480, 809 |
| BamHI | GGATCC | 1 cut(s) | 645 |
| BanI | GGYRCC | 1 cut(s) | 475 |
| BbsI | GAAGAC | 2 cut(s) | 293, 485 |
| BccI | CCATC | 2 cut(s) | 550, 636 |
| BceAI | ACGGC | 1 cut(s) | 503 |
| BciT130I | CCWGG | 1 cut(s) | 139 |
| BcnI | CCSGG | 2 cut(s) | 655, 786 |
| BcoDI | GTCTC | 4 cut(s) | 309, 416, 458, 665 |
| BfaI | CTAG | 2 cut(s) | 546, 792 |
| BfrI | CTTAAG | 1 cut(s) | 770 |
| Bme1390I | CCNGG | 3 cut(s) | 139, 655, 786 |
| Bme18I | GGWCC | 1 cut(s) | 118 |
| BmeT110I | CYCGRG | 1 cut(s) | 802 |
| BmgT120I | GGNCC | 3 cut(s) | 68, 118, 273 |
| BmiI | GGNNCC | 5 cut(s) | 119, 135, 275, 477, 647 |
| BmrFI | CCNGG | 3 cut(s) | 139, 655, 786 |
| BmsI | GCATC | 3 cut(s) | 132, 253, 564 |
| BpiI | GAAGAC | 2 cut(s) | 293, 485 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 225, 257 |
| BpuMI | CCSGG | 2 cut(s) | 655, 786 |
| BsaBI | GATNNNNATC | 1 cut(s) | 267 |
| BsaHI | GRCGYC | 1 cut(s) | 490 |
| BsaJI | CCNNGG | 5 cut(s) | 26, 137, 485, 785, 801 |
| BsaWI | WCCGGW | 1 cut(s) | 508 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 672, 702 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 144, 282, 342, 486 |
| Bse8I | GATNNNNATC | 1 cut(s) | 267 |
| BseBI | CCWGG | 1 cut(s) | 139 |
| BseDI | CCNNGG | 5 cut(s) | 26, 137, 485, 785, 801 |
| BseGI | GGATG | 5 cut(s) | 13, 147, 153, 418, 781 |
| BseJI | GATNNNNATC | 1 cut(s) | 267 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 144, 282, 342, 486 |
| BseRI | GAGGAG | 2 cut(s) | 67, 597 |
| BseSI | GKGCMC | 2 cut(s) | 480, 809 |
| Bsh1236I | CGCG | 1 cut(s) | 614 |
| BshFI | GGCC | 3 cut(s) | 69, 274, 371 |
| BshNI | GGYRCC | 1 cut(s) | 475 |
| BsiHKCI | CYCGRG | 1 cut(s) | 802 |
| BsiSI | CCGG | 4 cut(s) | 422, 509, 655, 785 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 144, 282, 342, 486 |
| BsmAI | GTCTC | 4 cut(s) | 309, 416, 458, 665 |
| BsmBI | CGTCTC | 1 cut(s) | 309 |
| BsmI | GAATGC | 2 cut(s) | 100, 738 |
| BsnI | GGCC | 3 cut(s) | 69, 274, 371 |
| BsoBI | CYCGRG | 1 cut(s) | 802 |
| Bsp1286I | GDGCHC | 2 cut(s) | 480, 809 |
| Bsp143I | GATC | 4 cut(s) | 202, 386, 500, 645 |
| BspACI | CCGC | 6 cut(s) | 145, 577, 601, 614, 640, 664 |
| BspANI | GGCC | 3 cut(s) | 69, 274, 371 |
| BspFNI | CGCG | 1 cut(s) | 614 |
| BspLI | GGNNCC | 5 cut(s) | 119, 135, 275, 477, 647 |
| BspPI | GGATC | 3 cut(s) | 394, 640, 653 |
| BspT107I | GGYRCC | 1 cut(s) | 475 |
| BspTI | CTTAAG | 1 cut(s) | 770 |
| BssECI | CCNNGG | 5 cut(s) | 26, 137, 485, 785, 801 |
| BssMI | GATC | 4 cut(s) | 202, 386, 500, 645 |
| BssNI | GRCGYC | 1 cut(s) | 490 |
| BssT1I | CCWWGG | 1 cut(s) | 26 |
| Bst2UI | CCWGG | 1 cut(s) | 139 |
| Bst4CI | ACNGT | 2 cut(s) | 292, 716 |
| BstACI | GRCGYC | 1 cut(s) | 490 |
| BstAFI | CTTAAG | 1 cut(s) | 770 |
| BstDEI | CTNAG | 3 cut(s) | 458, 707, 819 |
| BstDSI | CCRYGG | 1 cut(s) | 485 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 340 |
| BstF5I | GGATG | 5 cut(s) | 13, 147, 153, 418, 781 |
| BstFNI | CGCG | 1 cut(s) | 614 |
| BstHHI | GCGC | 1 cut(s) | 626 |
| BstKTI | GATC | 4 cut(s) | 205, 389, 503, 648 |
| BstMAI | GTCTC | 4 cut(s) | 309, 416, 458, 665 |
| BstMBI | GATC | 4 cut(s) | 202, 386, 500, 645 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 368 |
| BstNI | CCWGG | 1 cut(s) | 139 |
| BstNSI | RCATGY | 1 cut(s) | 107 |
| BstSCI | CCNGG | 3 cut(s) | 137, 653, 784 |
| BstSLI | GKGCMC | 2 cut(s) | 480, 809 |
| BstUI | CGCG | 1 cut(s) | 614 |
| BstV2I | GAAGAC | 2 cut(s) | 293, 485 |
| BstX2I | RGATCY | 1 cut(s) | 645 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 700 |
| BstYI | RGATCY | 1 cut(s) | 645 |
| BsuRI | GGCC | 3 cut(s) | 69, 274, 371 |
| BtgI | CCRYGG | 1 cut(s) | 485 |
| BtsCI | GGATG | 5 cut(s) | 13, 147, 153, 418, 781 |
| CfoI | GCGC | 1 cut(s) | 626 |
| Cfr13I | GGNCC | 3 cut(s) | 68, 118, 273 |
| CseI | GACGC | 1 cut(s) | 479 |
| CviAII | CATG | 2 cut(s) | 104, 122 |
| CviJI | RGCY | 7 cut(s) | 25, 69, 274, 346, 371, 425, 751 |
| CviKI_1 | RGCY | 7 cut(s) | 25, 69, 274, 346, 371, 425, 751 |
| DdeI | CTNAG | 3 cut(s) | 458, 707, 819 |
| DpnI | GATC | 4 cut(s) | 204, 388, 502, 647 |
| DpnII | GATC | 4 cut(s) | 202, 386, 500, 645 |
| EciI | GGCGGA | 1 cut(s) | 653 |
| Eco130I | CCWWGG | 1 cut(s) | 26 |
| Eco47I | GGWCC | 1 cut(s) | 118 |
| Eco88I | CYCGRG | 1 cut(s) | 802 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 340 |
| EcoRI | GAATTC | 1 cut(s) | 329 |
| EcoRII | CCWGG | 1 cut(s) | 137 |
| EcoT14I | CCWWGG | 1 cut(s) | 26 |
| ErhI | CCWWGG | 1 cut(s) | 26 |
| Esp3I | CGTCTC | 1 cut(s) | 309 |
| FaeI | CATG | 2 cut(s) | 107, 125 |
| FaiI | YATR | 9 cut(s) | 87, 105, 123, 129, 213, 280, 376, 408, 443 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 422, 454 |
| FatI | CATG | 2 cut(s) | 103, 121 |
| FokI | GGATG | 5 cut(s) | 20, 154, 160, 405, 768 |
| FspBI | CTAG | 2 cut(s) | 546, 792 |
| GlaI | GCGC | 1 cut(s) | 625 |
| HaeIII | GGCC | 3 cut(s) | 69, 274, 371 |
| HapII | CCGG | 4 cut(s) | 422, 509, 655, 785 |
| HgaI | GACGC | 1 cut(s) | 479 |
| HhaI | GCGC | 1 cut(s) | 626 |
| Hin1I | GRCGYC | 1 cut(s) | 490 |
| Hin1II | CATG | 2 cut(s) | 107, 125 |
| Hin6I | GCGC | 1 cut(s) | 624 |
| HinP1I | GCGC | 1 cut(s) | 624 |
| HinfI | GANTC | 4 cut(s) | 253, 526, 594, 671 |
| HpaII | CCGG | 4 cut(s) | 422, 509, 655, 785 |
| HphI | GGTGA | 6 cut(s) | 50, 188, 325, 439, 521, 523 |
| Hpy166II | GTNNAC | 1 cut(s) | 447 |
| Hpy188I | TCNGA | 1 cut(s) | 252 |
| Hpy8I | GTNNAC | 1 cut(s) | 447 |
| Hpy99I | CGWCG | 1 cut(s) | 716 |
| HpyAV | CCTTC | 1 cut(s) | 81 |
| HpyCH4III | ACNGT | 2 cut(s) | 292, 716 |
| HpyCH4IV | ACGT | 1 cut(s) | 809 |
| HpyCH4V | TGCA | 1 cut(s) | 58 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 368 |
| HpyF3I | CTNAG | 3 cut(s) | 458, 707, 819 |
| HpySE526I | ACGT | 1 cut(s) | 809 |
| Hsp92I | GRCGYC | 1 cut(s) | 490 |
| Hsp92II | CATG | 2 cut(s) | 107, 125 |
| HspAI | GCGC | 1 cut(s) | 624 |
| Kzo9I | GATC | 4 cut(s) | 202, 386, 500, 645 |
| LpnPI | CCDG | 8 cut(s) | 47, 124, 151, 363, 435, 522, 668, 798 |
| LweI | GCATC | 3 cut(s) | 132, 253, 564 |
| MaeI | CTAG | 2 cut(s) | 546, 792 |
| MaeII | ACGT | 1 cut(s) | 809 |
| MaeIII | GTNAC | 1 cut(s) | 603 |
| MalI | GATC | 4 cut(s) | 204, 388, 502, 647 |
| MboI | GATC | 4 cut(s) | 202, 386, 500, 645 |
| MboII | GAAGA | 2 cut(s) | 298, 485 |
| MflI | RGATCY | 1 cut(s) | 645 |
| MhlI | GDGCHC | 2 cut(s) | 480, 809 |
| MluCI | AATT | 6 cut(s) | 171, 309, 329, 353, 397, 619 |
| MlyI | GAGTC | 1 cut(s) | 680 |
| MmeI | TCCRAC | 3 cut(s) | 571, 699, 756 |
| MseI | TTAA | 4 cut(s) | 15, 297, 396, 771 |
| MslI | CAYNNNNRTG | 1 cut(s) | 759 |
| MspA1I | CMGCKG | 1 cut(s) | 640 |
| MspCI | CTTAAG | 1 cut(s) | 770 |
| MspI | CCGG | 4 cut(s) | 422, 509, 655, 785 |
| MspR9I | CCNGG | 3 cut(s) | 139, 655, 786 |
| Mva1269I | GAATGC | 2 cut(s) | 100, 738 |
| MvaI | CCWGG | 1 cut(s) | 139 |
| MvnI | CGCG | 1 cut(s) | 614 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 368 |
| NciI | CCSGG | 2 cut(s) | 655, 786 |
| NdeII | GATC | 4 cut(s) | 202, 386, 500, 645 |
| NlaIII | CATG | 2 cut(s) | 107, 125 |
| NlaIV | GGNNCC | 5 cut(s) | 119, 135, 275, 477, 647 |
| NmeAIII | GCCGAG | 1 cut(s) | 727 |
| NspI | RCATGY | 1 cut(s) | 107 |
| PctI | GAATGC | 2 cut(s) | 100, 738 |
| PfeI | GAWTC | 3 cut(s) | 253, 526, 594 |
| PleI | GAGTC | 1 cut(s) | 679 |
| PpsI | GAGTC | 1 cut(s) | 679 |
| PshBI | ATTAAT | 1 cut(s) | 396 |
| Psp6I | CCWGG | 1 cut(s) | 137 |
| PspGI | CCWGG | 1 cut(s) | 137 |
| PspN4I | GGNNCC | 5 cut(s) | 119, 135, 275, 477, 647 |
| PspPI | GGNCC | 3 cut(s) | 68, 118, 273 |
| PsuI | RGATCY | 1 cut(s) | 645 |
| RseI | CAYNNNNRTG | 1 cut(s) | 759 |
| SaqAI | TTAA | 4 cut(s) | 15, 297, 396, 771 |
| Sau3AI | GATC | 4 cut(s) | 202, 386, 500, 645 |
| Sau96I | GGNCC | 3 cut(s) | 68, 118, 273 |
| SchI | GAGTC | 1 cut(s) | 680 |
| ScrFI | CCNGG | 3 cut(s) | 139, 655, 786 |
| SduI | GDGCHC | 2 cut(s) | 480, 809 |
| SetI | ASST | 9 cut(s) | 66, 135, 338, 352, 568, 685, 702, 803, 812 |
| SfaNI | GCATC | 3 cut(s) | 132, 253, 564 |
| SinI | GGWCC | 1 cut(s) | 118 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 759 |
| SmlI | CTYRAG | 1 cut(s) | 770 |
| SmoI | CTYRAG | 1 cut(s) | 770 |
| Sse9I | AATT | 6 cut(s) | 171, 309, 329, 353, 397, 619 |
| SsiI | CCGC | 6 cut(s) | 145, 577, 601, 614, 640, 664 |
| SspI | AATATT | 1 cut(s) | 51 |
| SspMI | CTAG | 2 cut(s) | 546, 792 |
| StyD4I | CCNGG | 3 cut(s) | 137, 653, 784 |
| StyI | CCWWGG | 1 cut(s) | 26 |
| TaaI | ACNGT | 2 cut(s) | 292, 716 |
| TaiI | ACGT | 1 cut(s) | 812 |
| TaqI | TCGA | 3 cut(s) | 389, 499, 685 |
| TasI | AATT | 6 cut(s) | 171, 309, 329, 353, 397, 619 |
| TfiI | GAWTC | 3 cut(s) | 253, 526, 594 |
| Tru1I | TTAA | 4 cut(s) | 15, 297, 396, 771 |
| Tru9I | TTAA | 4 cut(s) | 15, 297, 396, 771 |
| TspDTI | ATGAA | 3 cut(s) | 321, 539, 777 |
| TspGWI | ACGGA | 3 cut(s) | 167, 233, 693 |
| Vha464I | CTTAAG | 1 cut(s) | 770 |
| VpaK11BI | GGWCC | 1 cut(s) | 118 |
| VspI | ATTAAT | 1 cut(s) | 396 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 340 |
| XapI | RAATTY | 2 cut(s) | 329, 353 |
| XceI | RCATGY | 1 cut(s) | 107 |
| XspI | CTAG | 2 cut(s) | 546, 792 |