Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 33 - 108 | 2.6e-09 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 409 |
| AccI | GTMKAC | 1 cut(s) | 232 |
| AclWI | GGATC | 7 cut(s) | 27, 61, 87, 234, 335, 386, 737 |
| AcsI | RAATTY | 1 cut(s) | 587 |
| AfaI | GTAC | 1 cut(s) | 166 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 76, 264, 467, 511 |
| AflII | CTTAAG | 1 cut(s) | 157 |
| AgsI | TTSAA | 2 cut(s) | 152, 212 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 578, 610 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 325, 357, 442, 474 |
| AlwI | GGATC | 7 cut(s) | 27, 61, 87, 234, 335, 386, 737 |
| AoxI | GGCC | 1 cut(s) | 9 |
| ApoI | RAATTY | 1 cut(s) | 587 |
| AspLEI | GCGC | 1 cut(s) | 432 |
| AsuHPI | GGTGA | 2 cut(s) | 193, 491 |
| BanII | GRGCYC | 2 cut(s) | 187, 287 |
| BbsI | GAAGAC | 1 cut(s) | 127 |
| BccI | CCATC | 4 cut(s) | 212, 323, 540, 702 |
| BclI | TGATCA | 1 cut(s) | 298 |
| BfaI | CTAG | 2 cut(s) | 575, 799 |
| BfrI | CTTAAG | 1 cut(s) | 157 |
| BfuAI | ACCTGC | 1 cut(s) | 409 |
| BglII | AGATCT | 1 cut(s) | 55 |
| BmcAI | AGTACT | 1 cut(s) | 166 |
| BmiI | GGNNCC | 2 cut(s) | 284, 451 |
| BmrI | ACTGGG | 1 cut(s) | 455 |
| BmsI | GCATC | 3 cut(s) | 37, 244, 747 |
| BmuI | ACTGGG | 1 cut(s) | 455 |
| BpiI | GAAGAC | 1 cut(s) | 127 |
| BsaBI | GATNNNNATC | 2 cut(s) | 71, 225 |
| BsaJI | CCNNGG | 3 cut(s) | 12, 287, 723 |
| BsaWI | WCCGGW | 1 cut(s) | 261 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 76, 264, 467, 511 |
| Bse1I | ACTGG | 1 cut(s) | 450 |
| Bse8I | GATNNNNATC | 2 cut(s) | 71, 225 |
| BseDI | CCNNGG | 3 cut(s) | 12, 287, 723 |
| BseGI | GGATG | 3 cut(s) | 91, 665, 733 |
| BseJI | GATNNNNATC | 2 cut(s) | 71, 225 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 76, 264, 467, 511 |
| BseMII | CTCAG | 3 cut(s) | 179, 380, 430 |
| BseNI | ACTGG | 1 cut(s) | 450 |
| BseRI | GAGGAG | 2 cut(s) | 20, 209 |
| BshFI | GGCC | 1 cut(s) | 11 |
| BsiSI | CCGG | 1 cut(s) | 262 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 76, 264, 467, 511 |
| BsnI | GGCC | 1 cut(s) | 11 |
| Bsp1286I | GDGCHC | 2 cut(s) | 187, 287 |
| Bsp143I | GATC | 9 cut(s) | 19, 55, 66, 79, 226, 298, 340, 378, 742 |
| Bsp19I | CCATGG | 1 cut(s) | 287 |
| BspANI | GGCC | 1 cut(s) | 11 |
| BspCNI | CTCAG | 3 cut(s) | 180, 379, 429 |
| BspHI | TCATGA | 1 cut(s) | 408 |
| BspLI | GGNNCC | 2 cut(s) | 284, 451 |
| BspMI | ACCTGC | 1 cut(s) | 409 |
| BspPI | GGATC | 7 cut(s) | 27, 61, 87, 234, 335, 386, 737 |
| BspTI | CTTAAG | 1 cut(s) | 157 |
| BsrI | ACTGG | 1 cut(s) | 450 |
| BssECI | CCNNGG | 3 cut(s) | 12, 287, 723 |
| BssMI | GATC | 9 cut(s) | 19, 55, 66, 79, 226, 298, 340, 378, 742 |
| BssNAI | GTATAC | 1 cut(s) | 233 |
| BssT1I | CCWWGG | 3 cut(s) | 12, 287, 723 |
| Bst1107I | GTATAC | 1 cut(s) | 233 |
| Bst4CI | ACNGT | 2 cut(s) | 126, 337 |
| BstAFI | CTTAAG | 1 cut(s) | 157 |
| BstDEI | CTNAG | 4 cut(s) | 188, 359, 366, 416 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstEII | GGTNACC | 1 cut(s) | 199 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 262 |
| BstF5I | GGATG | 3 cut(s) | 91, 665, 733 |
| BstHHI | GCGC | 1 cut(s) | 432 |
| BstKTI | GATC | 9 cut(s) | 22, 58, 69, 82, 229, 301, 343, 381, 745 |
| BstMBI | GATC | 9 cut(s) | 19, 55, 66, 79, 226, 298, 340, 378, 742 |
| BstPI | GGTNACC | 1 cut(s) | 199 |
| BstV2I | GAAGAC | 1 cut(s) | 127 |
| BstX2I | RGATCY | 3 cut(s) | 19, 55, 79 |
| BstYI | RGATCY | 3 cut(s) | 19, 55, 79 |
| BstZ17I | GTATAC | 1 cut(s) | 233 |
| BsuRI | GGCC | 1 cut(s) | 11 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtsCI | GGATG | 3 cut(s) | 91, 665, 733 |
| BveI | ACCTGC | 1 cut(s) | 409 |
| CciI | TCATGA | 1 cut(s) | 408 |
| CfoI | GCGC | 1 cut(s) | 432 |
| Csp6I | GTAC | 1 cut(s) | 165 |
| CviAII | CATG | 4 cut(s) | 288, 302, 409, 647 |
| CviJI | RGCY | 8 cut(s) | 11, 155, 178, 185, 285, 371, 777, 798 |
| CviKI_1 | RGCY | 8 cut(s) | 11, 155, 178, 185, 285, 371, 777, 798 |
| CviQI | GTAC | 1 cut(s) | 165 |
| DdeI | CTNAG | 4 cut(s) | 188, 359, 366, 416 |
| DpnI | GATC | 9 cut(s) | 21, 57, 68, 81, 228, 300, 342, 380, 744 |
| DpnII | GATC | 9 cut(s) | 19, 55, 66, 79, 226, 298, 340, 378, 742 |
| Eco130I | CCWWGG | 3 cut(s) | 12, 287, 723 |
| Eco147I | AGGCCT | 1 cut(s) | 11 |
| Eco24I | GRGCYC | 2 cut(s) | 187, 287 |
| Eco91I | GGTNACC | 1 cut(s) | 199 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 262 |
| EcoO65I | GGTNACC | 1 cut(s) | 199 |
| EcoT14I | CCWWGG | 3 cut(s) | 12, 287, 723 |
| EcoT38I | GRGCYC | 2 cut(s) | 187, 287 |
| ErhI | CCWWGG | 3 cut(s) | 12, 287, 723 |
| FaeI | CATG | 4 cut(s) | 291, 305, 412, 650 |
| FaiI | YATR | 9 cut(s) | 35, 170, 233, 289, 303, 308, 410, 603, 648 |
| FatI | CATG | 4 cut(s) | 287, 301, 408, 646 |
| FbaI | TGATCA | 1 cut(s) | 298 |
| FblI | GTMKAC | 1 cut(s) | 232 |
| FokI | GGATG | 3 cut(s) | 98, 672, 740 |
| FriOI | GRGCYC | 2 cut(s) | 187, 287 |
| FspBI | CTAG | 2 cut(s) | 575, 799 |
| GlaI | GCGC | 1 cut(s) | 431 |
| HaeIII | GGCC | 1 cut(s) | 11 |
| HapII | CCGG | 1 cut(s) | 262 |
| HhaI | GCGC | 1 cut(s) | 432 |
| Hin1II | CATG | 4 cut(s) | 291, 305, 412, 650 |
| Hin6I | GCGC | 1 cut(s) | 430 |
| HinP1I | GCGC | 1 cut(s) | 430 |
| HincII | GTYRAC | 1 cut(s) | 129 |
| HindII | GTYRAC | 1 cut(s) | 129 |
| HinfI | GANTC | 4 cut(s) | 221, 412, 681, 781 |
| HpaI | GTTAAC | 1 cut(s) | 129 |
| HpaII | CCGG | 1 cut(s) | 262 |
| HphI | GGTGA | 2 cut(s) | 193, 491 |
| Hpy166II | GTNNAC | 3 cut(s) | 129, 233, 733 |
| Hpy188I | TCNGA | 8 cut(s) | 24, 60, 79, 189, 226, 253, 419, 756 |
| Hpy188III | TCNNGA | 2 cut(s) | 83, 409 |
| Hpy8I | GTNNAC | 3 cut(s) | 129, 233, 733 |
| HpyAV | CCTTC | 1 cut(s) | 415 |
| HpyCH4III | ACNGT | 2 cut(s) | 126, 337 |
| HpyCH4V | TGCA | 6 cut(s) | 50, 102, 323, 541, 670, 760 |
| HpyF3I | CTNAG | 4 cut(s) | 188, 359, 366, 416 |
| Hsp92II | CATG | 4 cut(s) | 291, 305, 412, 650 |
| HspAI | GCGC | 1 cut(s) | 430 |
| Ksp22I | TGATCA | 1 cut(s) | 298 |
| KspAI | GTTAAC | 1 cut(s) | 129 |
| Kzo9I | GATC | 9 cut(s) | 19, 55, 66, 79, 226, 298, 340, 378, 742 |
| LmnI | GCTCC | 1 cut(s) | 282 |
| LweI | GCATC | 3 cut(s) | 37, 244, 747 |
| MaeI | CTAG | 2 cut(s) | 575, 799 |
| MaeIII | GTNAC | 1 cut(s) | 199 |
| MalI | GATC | 9 cut(s) | 21, 57, 68, 81, 228, 300, 342, 380, 744 |
| MboI | GATC | 9 cut(s) | 19, 55, 66, 79, 226, 298, 340, 378, 742 |
| MboII | GAAGA | 4 cut(s) | 65, 132, 230, 717 |
| MflI | RGATCY | 3 cut(s) | 19, 55, 79 |
| MhlI | GDGCHC | 2 cut(s) | 187, 287 |
| MluCI | AATT | 1 cut(s) | 587 |
| MlyI | GAGTC | 1 cut(s) | 690 |
| MmeI | TCCRAC | 2 cut(s) | 97, 550 |
| MseI | TTAA | 5 cut(s) | 128, 158, 275, 396, 552 |
| MspCI | CTTAAG | 1 cut(s) | 157 |
| MspI | CCGG | 1 cut(s) | 262 |
| NcoI | CCATGG | 1 cut(s) | 287 |
| NdeII | GATC | 9 cut(s) | 19, 55, 66, 79, 226, 298, 340, 378, 742 |
| NlaIII | CATG | 4 cut(s) | 291, 305, 412, 650 |
| NlaIV | GGNNCC | 2 cut(s) | 284, 451 |
| NmuCI | GTSAC | 1 cut(s) | 199 |
| PagI | TCATGA | 1 cut(s) | 408 |
| PceI | AGGCCT | 1 cut(s) | 11 |
| PfeI | GAWTC | 3 cut(s) | 221, 412, 781 |
| PleI | GAGTC | 1 cut(s) | 689 |
| PpsI | GAGTC | 1 cut(s) | 689 |
| PspEI | GGTNACC | 1 cut(s) | 199 |
| PspN4I | GGNNCC | 2 cut(s) | 284, 451 |
| PsuI | RGATCY | 3 cut(s) | 19, 55, 79 |
| RsaI | GTAC | 1 cut(s) | 166 |
| RsaNI | GTAC | 1 cut(s) | 165 |
| SaqAI | TTAA | 5 cut(s) | 128, 158, 275, 396, 552 |
| Sau3AI | GATC | 9 cut(s) | 19, 55, 66, 79, 226, 298, 340, 378, 742 |
| ScaI | AGTACT | 1 cut(s) | 166 |
| SchI | GAGTC | 1 cut(s) | 690 |
| SduI | GDGCHC | 2 cut(s) | 187, 287 |
| SetI | ASST | 9 cut(s) | 201, 394, 403, 455, 528, 621, 701, 773, 793 |
| SfaNI | GCATC | 3 cut(s) | 37, 244, 747 |
| SmlI | CTYRAG | 1 cut(s) | 157 |
| SmoI | CTYRAG | 1 cut(s) | 157 |
| Sse9I | AATT | 1 cut(s) | 587 |
| SseBI | AGGCCT | 1 cut(s) | 11 |
| SspI | AATATT | 1 cut(s) | 556 |
| SspMI | CTAG | 2 cut(s) | 575, 799 |
| StuI | AGGCCT | 1 cut(s) | 11 |
| StyI | CCWWGG | 3 cut(s) | 12, 287, 723 |
| TaaI | ACNGT | 2 cut(s) | 126, 337 |
| TaqI | TCGA | 2 cut(s) | 388, 737 |
| TasI | AATT | 1 cut(s) | 587 |
| TatI | WGTACW | 1 cut(s) | 164 |
| TfiI | GAWTC | 3 cut(s) | 221, 412, 781 |
| Tru1I | TTAA | 5 cut(s) | 128, 158, 275, 396, 552 |
| Tru9I | TTAA | 5 cut(s) | 128, 158, 275, 396, 552 |
| TseFI | GTSAC | 1 cut(s) | 199 |
| Tsp45I | GTSAC | 1 cut(s) | 199 |
| TspDTI | ATGAA | 5 cut(s) | 185, 397, 425, 549, 618 |
| TspGWI | ACGGA | 1 cut(s) | 494 |
| Vha464I | CTTAAG | 1 cut(s) | 157 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 262 |
| XapI | RAATTY | 1 cut(s) | 587 |
| XmiI | GTMKAC | 1 cut(s) | 232 |
| XspI | CTAG | 2 cut(s) | 575, 799 |
| ZrmI | AGTACT | 1 cut(s) | 166 |