Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Fe-S_biosyn | PF01521 | 25 - 123 | 2.2e-18 | Iron-sulphur cluster biosynthesis |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 22 |
| AciI | CCGC | 6 cut(s) | 29, 32, 35, 53, 89, 127 |
| AclWI | GGATC | 1 cut(s) | 248 |
| AcyI | GRCGYC | 2 cut(s) | 61, 147 |
| AfaI | GTAC | 2 cut(s) | 102, 179 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 22 |
| AluBI | AGCT | 5 cut(s) | 47, 109, 142, 310, 398 |
| AluI | AGCT | 5 cut(s) | 47, 109, 142, 310, 398 |
| AlwI | GGATC | 1 cut(s) | 248 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 22, 86 |
| Ama87I | CYCGRG | 1 cut(s) | 156 |
| ApeKI | GCWGC | 4 cut(s) | 26, 86, 118, 162 |
| AspLEI | GCGC | 1 cut(s) | 123 |
| AspS9I | GGNCC | 2 cut(s) | 282, 315 |
| AsuHPI | GGTGA | 1 cut(s) | 377 |
| AvaI | CYCGRG | 1 cut(s) | 156 |
| AvaII | GGWCC | 2 cut(s) | 282, 315 |
| BbsI | GAAGAC | 1 cut(s) | 234 |
| BbvI | GCAGC | 4 cut(s) | 38, 73, 130, 149 |
| BccI | CCATC | 2 cut(s) | 191, 283 |
| BceAI | ACGGC | 2 cut(s) | 53, 184 |
| BfaI | CTAG | 2 cut(s) | 96, 113 |
| BfoI | RGCGCY | 1 cut(s) | 124 |
| BisI | GCNGC | 8 cut(s) | 27, 30, 33, 54, 87, 90, 119, 163 |
| BlsI | GCNGC | 8 cut(s) | 28, 31, 34, 55, 88, 91, 120, 164 |
| Bme18I | GGWCC | 2 cut(s) | 282, 315 |
| BmeT110I | CYCGRG | 1 cut(s) | 156 |
| BmgT120I | GGNCC | 2 cut(s) | 282, 315 |
| BmiI | GGNNCC | 1 cut(s) | 283 |
| BmrI | ACTGGG | 1 cut(s) | 10 |
| BmsI | GCATC | 2 cut(s) | 101, 258 |
| BmuI | ACTGGG | 1 cut(s) | 10 |
| BpiI | GAAGAC | 1 cut(s) | 234 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 31, 63 |
| Bpu10I | CCTNAGC | 1 cut(s) | 311 |
| BpuEI | CTTGAG | 1 cut(s) | 122 |
| Bsa29I | ATCGAT | 1 cut(s) | 252 |
| BsaBI | GATNNNNATC | 1 cut(s) | 248 |
| BsaHI | GRCGYC | 2 cut(s) | 61, 147 |
| BsaJI | CCNNGG | 1 cut(s) | 157 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 93, 123 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 22 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| Bse8I | GATNNNNATC | 1 cut(s) | 248 |
| BseCI | ATCGAT | 1 cut(s) | 252 |
| BseDI | CCNNGG | 1 cut(s) | 157 |
| BseJI | GATNNNNATC | 1 cut(s) | 248 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 22 |
| BseMII | CTCAG | 1 cut(s) | 325 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| BseXI | GCAGC | 4 cut(s) | 38, 73, 130, 149 |
| Bsh1285I | CGRYCG | 1 cut(s) | 131 |
| BshVI | ATCGAT | 1 cut(s) | 252 |
| BsiEI | CGRYCG | 1 cut(s) | 131 |
| BsiHKCI | CYCGRG | 1 cut(s) | 156 |
| BsiSI | CCGG | 1 cut(s) | 50 |
| BslFI | GGGAC | 2 cut(s) | 139, 295 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 22 |
| BsmFI | GGGAC | 2 cut(s) | 139, 295 |
| BsoBI | CYCGRG | 1 cut(s) | 156 |
| Bsp143I | GATC | 3 cut(s) | 222, 249, 253 |
| BspACI | CCGC | 6 cut(s) | 29, 32, 35, 53, 89, 127 |
| BspCNI | CTCAG | 1 cut(s) | 324 |
| BspDI | ATCGAT | 1 cut(s) | 252 |
| BspHI | TCATGA | 1 cut(s) | 375 |
| BspLI | GGNNCC | 1 cut(s) | 283 |
| BspPI | GGATC | 1 cut(s) | 248 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssECI | CCNNGG | 1 cut(s) | 157 |
| BssMI | GATC | 3 cut(s) | 222, 249, 253 |
| BssNI | GRCGYC | 2 cut(s) | 61, 147 |
| BstACI | GRCGYC | 2 cut(s) | 61, 147 |
| BstC8I | GCNNGC | 1 cut(s) | 125 |
| BstDEI | CTNAG | 1 cut(s) | 311 |
| BstH2I | RGCGCY | 1 cut(s) | 124 |
| BstHHI | GCGC | 1 cut(s) | 123 |
| BstKTI | GATC | 3 cut(s) | 225, 252, 256 |
| BstMBI | GATC | 3 cut(s) | 222, 249, 253 |
| BstMCI | CGRYCG | 1 cut(s) | 131 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 32, 53, 115, 124, 168 |
| BstNSI | RCATGY | 1 cut(s) | 275 |
| BstV1I | GCAGC | 4 cut(s) | 38, 73, 130, 149 |
| BstV2I | GAAGAC | 1 cut(s) | 234 |
| Bsu15I | ATCGAT | 1 cut(s) | 252 |
| BsuTUI | ATCGAT | 1 cut(s) | 252 |
| Cac8I | GCNNGC | 1 cut(s) | 125 |
| CaiI | CAGNNNCTG | 2 cut(s) | 22, 86 |
| CciI | TCATGA | 1 cut(s) | 375 |
| CfoI | GCGC | 1 cut(s) | 123 |
| Cfr13I | GGNCC | 2 cut(s) | 282, 315 |
| ClaI | ATCGAT | 1 cut(s) | 252 |
| CseI | GACGC | 3 cut(s) | 50, 92, 136 |
| Csp6I | GTAC | 2 cut(s) | 101, 178 |
| CviAII | CATG | 2 cut(s) | 272, 376 |
| CviQI | GTAC | 2 cut(s) | 101, 178 |
| DdeI | CTNAG | 1 cut(s) | 311 |
| DpnI | GATC | 3 cut(s) | 224, 251, 255 |
| DpnII | GATC | 3 cut(s) | 222, 249, 253 |
| EciI | GGCGGA | 1 cut(s) | 50 |
| Eco47I | GGWCC | 2 cut(s) | 282, 315 |
| Eco88I | CYCGRG | 1 cut(s) | 156 |
| EcoT22I | ATGCAT | 1 cut(s) | 273 |
| FaeI | CATG | 2 cut(s) | 275, 379 |
| FaiI | YATR | 2 cut(s) | 273, 377 |
| FaqI | GGGAC | 2 cut(s) | 139, 295 |
| FatI | CATG | 2 cut(s) | 271, 375 |
| Fnu4HI | GCNGC | 8 cut(s) | 27, 30, 33, 54, 87, 90, 119, 163 |
| Fsp4HI | GCNGC | 8 cut(s) | 27, 30, 33, 54, 87, 90, 119, 163 |
| FspBI | CTAG | 2 cut(s) | 96, 113 |
| GlaI | GCGC | 1 cut(s) | 122 |
| GluI | GCNGC | 8 cut(s) | 27, 30, 33, 54, 87, 90, 119, 163 |
| HaeII | RGCGCY | 1 cut(s) | 124 |
| HapII | CCGG | 1 cut(s) | 50 |
| HgaI | GACGC | 3 cut(s) | 50, 92, 136 |
| HhaI | GCGC | 1 cut(s) | 123 |
| Hin1I | GRCGYC | 2 cut(s) | 61, 147 |
| Hin1II | CATG | 2 cut(s) | 275, 379 |
| Hin6I | GCGC | 1 cut(s) | 121 |
| HinP1I | GCGC | 1 cut(s) | 121 |
| HinfI | GANTC | 1 cut(s) | 368 |
| HpaII | CCGG | 1 cut(s) | 50 |
| HphI | GGTGA | 1 cut(s) | 377 |
| Hpy166II | GTNNAC | 1 cut(s) | 180 |
| Hpy188I | TCNGA | 2 cut(s) | 267, 319 |
| Hpy188III | TCNNGA | 3 cut(s) | 96, 156, 376 |
| Hpy8I | GTNNAC | 1 cut(s) | 180 |
| Hpy99I | CGWCG | 1 cut(s) | 218 |
| HpyCH4V | TGCA | 2 cut(s) | 165, 271 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 32, 53, 115, 124, 168 |
| HpyF3I | CTNAG | 1 cut(s) | 311 |
| Hsp92I | GRCGYC | 2 cut(s) | 61, 147 |
| Hsp92II | CATG | 2 cut(s) | 275, 379 |
| HspAI | GCGC | 1 cut(s) | 121 |
| Kzo9I | GATC | 3 cut(s) | 222, 249, 253 |
| LmnI | GCTCC | 3 cut(s) | 52, 114, 395 |
| LpnPI | CCDG | 6 cut(s) | 8, 29, 63, 137, 298, 399 |
| Lsp1109I | GCAGC | 4 cut(s) | 38, 73, 130, 149 |
| LweI | GCATC | 2 cut(s) | 101, 258 |
| MaeI | CTAG | 2 cut(s) | 96, 113 |
| MalI | GATC | 3 cut(s) | 224, 251, 255 |
| MboI | GATC | 3 cut(s) | 222, 249, 253 |
| MboII | GAAGA | 2 cut(s) | 239, 253 |
| MluCI | AATT | 1 cut(s) | 187 |
| MnlI | CCTC | 3 cut(s) | 33, 51, 152 |
| Mph1103I | ATGCAT | 1 cut(s) | 273 |
| MseI | TTAA | 2 cut(s) | 77, 418 |
| MspA1I | CMGCKG | 2 cut(s) | 29, 127 |
| MspI | CCGG | 1 cut(s) | 50 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 32, 53, 115, 124, 168 |
| NdeII | GATC | 3 cut(s) | 222, 249, 253 |
| NlaIII | CATG | 2 cut(s) | 275, 379 |
| NlaIV | GGNNCC | 1 cut(s) | 283 |
| NmeAIII | GCCGAG | 1 cut(s) | 123 |
| NsiI | ATGCAT | 1 cut(s) | 273 |
| NspI | RCATGY | 1 cut(s) | 275 |
| PagI | TCATGA | 1 cut(s) | 375 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 222 |
| PfeI | GAWTC | 1 cut(s) | 368 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 22 |
| PkrI | GCNGC | 8 cut(s) | 28, 31, 34, 55, 88, 91, 120, 164 |
| PspN4I | GGNNCC | 1 cut(s) | 283 |
| PspPI | GGNCC | 2 cut(s) | 282, 315 |
| PstNI | CAGNNNCTG | 2 cut(s) | 22, 86 |
| RsaI | GTAC | 2 cut(s) | 102, 179 |
| RsaNI | GTAC | 2 cut(s) | 101, 178 |
| SaqAI | TTAA | 2 cut(s) | 77, 418 |
| SatI | GCNGC | 8 cut(s) | 27, 30, 33, 54, 87, 90, 119, 163 |
| Sau3AI | GATC | 3 cut(s) | 222, 249, 253 |
| Sau96I | GGNCC | 2 cut(s) | 282, 315 |
| SetI | ASST | 7 cut(s) | 49, 111, 144, 208, 312, 317, 400 |
| SfaNI | GCATC | 2 cut(s) | 101, 258 |
| SinI | GGWCC | 2 cut(s) | 282, 315 |
| SmlI | CTYRAG | 1 cut(s) | 137 |
| SmoI | CTYRAG | 1 cut(s) | 137 |
| Sse9I | AATT | 1 cut(s) | 187 |
| SsiI | CCGC | 6 cut(s) | 29, 32, 35, 53, 89, 127 |
| SspMI | CTAG | 2 cut(s) | 96, 113 |
| TaqI | TCGA | 3 cut(s) | 213, 225, 252 |
| TasI | AATT | 1 cut(s) | 187 |
| TauI | GCSGC | 4 cut(s) | 32, 35, 56, 92 |
| TfiI | GAWTC | 1 cut(s) | 368 |
| Tru1I | TTAA | 2 cut(s) | 77, 418 |
| Tru9I | TTAA | 2 cut(s) | 77, 418 |
| TseI | GCWGC | 4 cut(s) | 26, 86, 118, 162 |
| TspDTI | ATGAA | 1 cut(s) | 364 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 22 |
| VpaK11BI | GGWCC | 2 cut(s) | 282, 315 |
| XbaI | TCTAGA | 1 cut(s) | 95 |
| XceI | RCATGY | 1 cut(s) | 275 |
| XspI | CTAG | 2 cut(s) | 96, 113 |
| Zsp2I | ATGCAT | 1 cut(s) | 273 |