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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 8, 286, 411 |
| AccII | CGCG | 2 cut(s) | 159, 709 |
| AciI | CCGC | 6 cut(s) | 383, 446, 635, 707, 752, 760 |
| AclWI | GGATC | 3 cut(s) | 584, 597, 658 |
| AcoI | YGGCCR | 1 cut(s) | 142 |
| AcsI | RAATTY | 1 cut(s) | 738 |
| AcuI | CTGAAG | 1 cut(s) | 260 |
| AfaI | GTAC | 2 cut(s) | 103, 835 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 146 |
| AflIII | ACRYGT | 1 cut(s) | 537 |
| AgsI | TTSAA | 2 cut(s) | 56, 630 |
| AjnI | CCWGG | 1 cut(s) | 228 |
| AluBI | AGCT | 1 cut(s) | 404 |
| AluI | AGCT | 1 cut(s) | 404 |
| Alw21I | GWGCWC | 1 cut(s) | 18 |
| Alw26I | GTCTC | 3 cut(s) | 270, 353, 389 |
| AlwI | GGATC | 3 cut(s) | 584, 597, 658 |
| AoxI | GGCC | 2 cut(s) | 142, 512 |
| ApeKI | GCWGC | 2 cut(s) | 404, 656 |
| ApoI | RAATTY | 1 cut(s) | 738 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 219 |
| AspS9I | GGNCC | 2 cut(s) | 513, 820 |
| AsuC2I | CCSGG | 2 cut(s) | 141, 146 |
| AsuHPI | GGTGA | 2 cut(s) | 242, 353 |
| AsuII | TTCGAA | 1 cut(s) | 869 |
| AvaII | GGWCC | 1 cut(s) | 820 |
| BamHI | GGATCC | 1 cut(s) | 589 |
| BanII | GRGCYC | 1 cut(s) | 452 |
| BbsI | GAAGAC | 1 cut(s) | 555 |
| Bbv12I | GWGCWC | 1 cut(s) | 18 |
| BbvI | GCAGC | 2 cut(s) | 391, 643 |
| BccI | CCATC | 3 cut(s) | 207, 325, 331 |
| BceAI | ACGGC | 2 cut(s) | 378, 396 |
| BciT130I | CCWGG | 1 cut(s) | 230 |
| BciVI | GTATCC | 1 cut(s) | 60 |
| BcnI | CCSGG | 2 cut(s) | 141, 146 |
| BcoDI | GTCTC | 3 cut(s) | 270, 353, 389 |
| BfaI | CTAG | 1 cut(s) | 837 |
| BfmI | CTRYAG | 2 cut(s) | 9, 408 |
| BfuI | GTATCC | 1 cut(s) | 60 |
| BisI | GCNGC | 3 cut(s) | 405, 657, 753 |
| BlsI | GCNGC | 3 cut(s) | 406, 658, 754 |
| Bme1390I | CCNGG | 3 cut(s) | 141, 146, 230 |
| Bme18I | GGWCC | 1 cut(s) | 820 |
| BmgT120I | GGNCC | 2 cut(s) | 513, 820 |
| BmiI | GGNNCC | 2 cut(s) | 138, 591 |
| BmrFI | CCNGG | 3 cut(s) | 141, 146, 230 |
| BpiI | GAAGAC | 1 cut(s) | 555 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 155, 187 |
| Bpu14I | TTCGAA | 1 cut(s) | 869 |
| BpuMI | CCSGG | 2 cut(s) | 141, 146 |
| BsaI | GGTCTC | 1 cut(s) | 389 |
| BsaJI | CCNNGG | 2 cut(s) | 145, 390 |
| BsaWI | WCCGGW | 1 cut(s) | 647 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 688, 718 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 146 |
| Bse118I | RCCGGY | 1 cut(s) | 748 |
| BseBI | CCWGG | 1 cut(s) | 230 |
| BseDI | CCNNGG | 2 cut(s) | 145, 390 |
| BseGI | GGATG | 1 cut(s) | 199 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 146 |
| BseMII | CTCAG | 1 cut(s) | 902 |
| BseRI | GAGGAG | 1 cut(s) | 720 |
| BseX3I | CGGCCG | 1 cut(s) | 142 |
| BseXI | GCAGC | 2 cut(s) | 391, 643 |
| BseYI | CCCAGC | 1 cut(s) | 665 |
| Bsh1236I | CGCG | 2 cut(s) | 159, 709 |
| Bsh1285I | CGRYCG | 1 cut(s) | 145 |
| BshFI | GGCC | 2 cut(s) | 144, 514 |
| BsiEI | CGRYCG | 1 cut(s) | 145 |
| BsiHKAI | GWGCWC | 1 cut(s) | 18 |
| BsiSI | CCGG | 4 cut(s) | 141, 145, 648, 749 |
| BslFI | GGGAC | 1 cut(s) | 782 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 146 |
| BsmAI | GTCTC | 3 cut(s) | 270, 353, 389 |
| BsmBI | CGTCTC | 1 cut(s) | 353 |
| BsmFI | GGGAC | 1 cut(s) | 782 |
| BsmI | GAATGC | 2 cut(s) | 637, 898 |
| BsnI | GGCC | 2 cut(s) | 144, 514 |
| Bso31I | GGTCTC | 1 cut(s) | 389 |
| Bsp119I | TTCGAA | 1 cut(s) | 869 |
| Bsp1286I | GDGCHC | 2 cut(s) | 18, 452 |
| Bsp143I | GATC | 5 cut(s) | 19, 37, 496, 589, 650 |
| Bsp68I | TCGCGA | 1 cut(s) | 159 |
| BspACI | CCGC | 6 cut(s) | 383, 446, 635, 707, 752, 760 |
| BspANI | GGCC | 2 cut(s) | 144, 514 |
| BspCNI | CTCAG | 1 cut(s) | 901 |
| BspFNI | CGCG | 2 cut(s) | 159, 709 |
| BspLI | GGNNCC | 2 cut(s) | 138, 591 |
| BspPI | GGATC | 3 cut(s) | 584, 597, 658 |
| BspT104I | TTCGAA | 1 cut(s) | 869 |
| BspTNI | GGTCTC | 1 cut(s) | 389 |
| BsrFI | RCCGGY | 1 cut(s) | 748 |
| BssAI | RCCGGY | 1 cut(s) | 748 |
| BssECI | CCNNGG | 2 cut(s) | 145, 390 |
| BssMI | GATC | 5 cut(s) | 19, 37, 496, 589, 650 |
| BssNAI | GTATAC | 1 cut(s) | 287 |
| Bst1107I | GTATAC | 1 cut(s) | 287 |
| Bst2UI | CCWGG | 1 cut(s) | 230 |
| Bst4CI | ACNGT | 4 cut(s) | 254, 262, 416, 622 |
| Bst6I | CTCTTC | 1 cut(s) | 570 |
| BstBI | TTCGAA | 1 cut(s) | 869 |
| BstC8I | GCNNGC | 1 cut(s) | 448 |
| BstDEI | CTNAG | 1 cut(s) | 888 |
| BstDSI | CCRYGG | 1 cut(s) | 390 |
| BstEII | GGTNACC | 1 cut(s) | 643 |
| BstF5I | GGATG | 1 cut(s) | 199 |
| BstFNI | CGCG | 2 cut(s) | 159, 709 |
| BstKTI | GATC | 5 cut(s) | 22, 40, 499, 592, 653 |
| BstMAI | GTCTC | 3 cut(s) | 270, 353, 389 |
| BstMBI | GATC | 5 cut(s) | 19, 37, 496, 589, 650 |
| BstMCI | CGRYCG | 1 cut(s) | 145 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 662, 850 |
| BstNI | CCWGG | 1 cut(s) | 230 |
| BstNSI | RCATGY | 1 cut(s) | 541 |
| BstPI | GGTNACC | 1 cut(s) | 643 |
| BstSCI | CCNGG | 3 cut(s) | 139, 144, 228 |
| BstSFI | CTRYAG | 2 cut(s) | 9, 408 |
| BstUI | CGCG | 2 cut(s) | 159, 709 |
| BstV1I | GCAGC | 2 cut(s) | 391, 643 |
| BstV2I | GAAGAC | 1 cut(s) | 555 |
| BstX2I | RGATCY | 2 cut(s) | 589, 650 |
| BstYI | RGATCY | 2 cut(s) | 589, 650 |
| BstZ17I | GTATAC | 1 cut(s) | 287 |
| BstZI | CGGCCG | 1 cut(s) | 142 |
| BsuI | GTATCC | 1 cut(s) | 60 |
| BsuRI | GGCC | 2 cut(s) | 144, 514 |
| BtgI | CCRYGG | 1 cut(s) | 390 |
| BtgZI | GCGATG | 1 cut(s) | 174 |
| BtsCI | GGATG | 1 cut(s) | 199 |
| BtsI | GCAGTG | 1 cut(s) | 132 |
| BtsIMutI | CAGTG | 1 cut(s) | 132 |
| BtuMI | TCGCGA | 1 cut(s) | 159 |
| Cac8I | GCNNGC | 1 cut(s) | 448 |
| Cfr10I | RCCGGY | 1 cut(s) | 748 |
| Cfr13I | GGNCC | 2 cut(s) | 513, 820 |
| Csp6I | GTAC | 2 cut(s) | 102, 834 |
| CviAII | CATG | 2 cut(s) | 517, 538 |
| CviJI | RGCY | 8 cut(s) | 74, 144, 389, 404, 450, 477, 483, 514 |
| CviKI_1 | RGCY | 8 cut(s) | 74, 144, 389, 404, 450, 477, 483, 514 |
| CviQI | GTAC | 2 cut(s) | 102, 834 |
| DdeI | CTNAG | 1 cut(s) | 888 |
| DpnI | GATC | 5 cut(s) | 21, 39, 498, 591, 652 |
| DpnII | GATC | 5 cut(s) | 19, 37, 496, 589, 650 |
| EaeI | YGGCCR | 1 cut(s) | 142 |
| EagI | CGGCCG | 1 cut(s) | 142 |
| Eam1104I | CTCTTC | 1 cut(s) | 570 |
| EarI | CTCTTC | 1 cut(s) | 570 |
| EclXI | CGGCCG | 1 cut(s) | 142 |
| Eco24I | GRGCYC | 1 cut(s) | 452 |
| Eco31I | GGTCTC | 1 cut(s) | 389 |
| Eco47I | GGWCC | 1 cut(s) | 820 |
| Eco52I | CGGCCG | 1 cut(s) | 142 |
| Eco57I | CTGAAG | 1 cut(s) | 260 |
| Eco91I | GGTNACC | 1 cut(s) | 643 |
| EcoO65I | GGTNACC | 1 cut(s) | 643 |
| EcoRII | CCWGG | 1 cut(s) | 228 |
| EcoT38I | GRGCYC | 1 cut(s) | 452 |
| Esp3I | CGTCTC | 1 cut(s) | 353 |
| FaeI | CATG | 2 cut(s) | 520, 541 |
| FaiI | YATR | 7 cut(s) | 182, 287, 401, 471, 492, 518, 539 |
| FaqI | GGGAC | 1 cut(s) | 782 |
| FatI | CATG | 2 cut(s) | 516, 537 |
| FauI | CCCGC | 1 cut(s) | 439 |
| FblI | GTMKAC | 3 cut(s) | 8, 286, 411 |
| Fnu4HI | GCNGC | 3 cut(s) | 405, 657, 753 |
| FokI | GGATG | 1 cut(s) | 186 |
| FriOI | GRGCYC | 1 cut(s) | 452 |
| Fsp4HI | GCNGC | 3 cut(s) | 405, 657, 753 |
| FspBI | CTAG | 1 cut(s) | 837 |
| GluI | GCNGC | 3 cut(s) | 405, 657, 753 |
| GsaI | CCCAGC | 1 cut(s) | 669 |
| HaeIII | GGCC | 2 cut(s) | 144, 514 |
| HapII | CCGG | 4 cut(s) | 141, 145, 648, 749 |
| Hin1II | CATG | 2 cut(s) | 520, 541 |
| HincII | GTYRAC | 2 cut(s) | 307, 618 |
| HindII | GTYRAC | 2 cut(s) | 307, 618 |
| HinfI | GANTC | 6 cut(s) | 299, 530, 551, 584, 877, 884 |
| HpaI | GTTAAC | 1 cut(s) | 307 |
| HpaII | CCGG | 4 cut(s) | 141, 145, 648, 749 |
| HphI | GGTGA | 2 cut(s) | 242, 353 |
| Hpy166II | GTNNAC | 6 cut(s) | 9, 287, 307, 412, 457, 618 |
| Hpy188I | TCNGA | 6 cut(s) | 90, 240, 258, 334, 589, 745 |
| Hpy188III | TCNNGA | 4 cut(s) | 158, 356, 569, 881 |
| Hpy8I | GTNNAC | 6 cut(s) | 9, 287, 307, 412, 457, 618 |
| Hpy99I | CGWCG | 2 cut(s) | 159, 273 |
| HpyAV | CCTTC | 5 cut(s) | 235, 636, 806, 834, 865 |
| HpyCH4III | ACNGT | 4 cut(s) | 254, 262, 416, 622 |
| HpyCH4V | TGCA | 3 cut(s) | 502, 780, 806 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 662, 850 |
| HpyF3I | CTNAG | 1 cut(s) | 888 |
| Hsp92II | CATG | 2 cut(s) | 520, 541 |
| KspAI | GTTAAC | 1 cut(s) | 307 |
| Kzo9I | GATC | 5 cut(s) | 19, 37, 496, 589, 650 |
| Lsp1109I | GCAGC | 2 cut(s) | 391, 643 |
| MaeI | CTAG | 1 cut(s) | 837 |
| MaeIII | GTNAC | 5 cut(s) | 341, 376, 643, 673, 712 |
| MalI | GATC | 5 cut(s) | 21, 39, 498, 591, 652 |
| MboI | GATC | 5 cut(s) | 19, 37, 496, 589, 650 |
| MboII | GAAGA | 5 cut(s) | 72, 227, 557, 560, 858 |
| MfeI | CAATTG | 1 cut(s) | 311 |
| MflI | RGATCY | 2 cut(s) | 589, 650 |
| MhlI | GDGCHC | 2 cut(s) | 18, 452 |
| MluCI | AATT | 5 cut(s) | 131, 311, 630, 738, 824 |
| MlyI | GAGTC | 1 cut(s) | 545 |
| MmeI | TCCRAC | 3 cut(s) | 12, 507, 558 |
| MnlI | CCTC | 8 cut(s) | 213, 565, 573, 613, 714, 741, 756, 802 |
| MroXI | GAANNNNTTC | 1 cut(s) | 219 |
| MseI | TTAA | 1 cut(s) | 306 |
| MspI | CCGG | 4 cut(s) | 141, 145, 648, 749 |
| MspR9I | CCNGG | 3 cut(s) | 141, 146, 230 |
| MunI | CAATTG | 1 cut(s) | 311 |
| Mva1269I | GAATGC | 2 cut(s) | 637, 898 |
| MvaI | CCWGG | 1 cut(s) | 230 |
| MvnI | CGCG | 2 cut(s) | 159, 709 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 662, 850 |
| NciI | CCSGG | 2 cut(s) | 141, 146 |
| NdeII | GATC | 5 cut(s) | 19, 37, 496, 589, 650 |
| NlaIII | CATG | 2 cut(s) | 520, 541 |
| NlaIV | GGNNCC | 2 cut(s) | 138, 591 |
| NmuCI | GTSAC | 1 cut(s) | 341 |
| NruI | TCGCGA | 1 cut(s) | 159 |
| NspI | RCATGY | 1 cut(s) | 541 |
| NspV | TTCGAA | 1 cut(s) | 869 |
| PciI | ACATGT | 1 cut(s) | 537 |
| PctI | GAATGC | 2 cut(s) | 637, 898 |
| PdmI | GAANNNNTTC | 1 cut(s) | 219 |
| PfeI | GAWTC | 5 cut(s) | 299, 530, 584, 877, 884 |
| PflFI | GACNNNGTC | 1 cut(s) | 262 |
| PfoI | TCCNGGA | 1 cut(s) | 228 |
| PkrI | GCNGC | 3 cut(s) | 406, 658, 754 |
| PleI | GAGTC | 1 cut(s) | 545 |
| PpsI | GAGTC | 1 cut(s) | 545 |
| PscI | ACATGT | 1 cut(s) | 537 |
| Psp6I | CCWGG | 1 cut(s) | 228 |
| PspEI | GGTNACC | 1 cut(s) | 643 |
| PspFI | CCCAGC | 1 cut(s) | 665 |
| PspGI | CCWGG | 1 cut(s) | 228 |
| PspN4I | GGNNCC | 2 cut(s) | 138, 591 |
| PspPI | GGNCC | 2 cut(s) | 513, 820 |
| PsuI | RGATCY | 2 cut(s) | 589, 650 |
| PsyI | GACNNNGTC | 1 cut(s) | 262 |
| RruI | TCGCGA | 1 cut(s) | 159 |
| RsaI | GTAC | 2 cut(s) | 103, 835 |
| RsaNI | GTAC | 2 cut(s) | 102, 834 |
| SaqAI | TTAA | 1 cut(s) | 306 |
| SatI | GCNGC | 3 cut(s) | 405, 657, 753 |
| Sau3AI | GATC | 5 cut(s) | 19, 37, 496, 589, 650 |
| Sau96I | GGNCC | 2 cut(s) | 513, 820 |
| SchI | GAGTC | 1 cut(s) | 545 |
| ScrFI | CCNGG | 3 cut(s) | 141, 146, 230 |
| SduI | GDGCHC | 2 cut(s) | 18, 452 |
| SetI | ASST | 9 cut(s) | 189, 378, 406, 565, 576, 767, 817, 894, 913 |
| SfcI | CTRYAG | 2 cut(s) | 9, 408 |
| SfuI | TTCGAA | 1 cut(s) | 869 |
| SinI | GGWCC | 1 cut(s) | 820 |
| Sse9I | AATT | 5 cut(s) | 131, 311, 630, 738, 824 |
| SsiI | CCGC | 6 cut(s) | 383, 446, 635, 707, 752, 760 |
| SspMI | CTAG | 1 cut(s) | 837 |
| StyD4I | CCNGG | 3 cut(s) | 139, 144, 228 |
| TaaI | ACNGT | 4 cut(s) | 254, 262, 416, 622 |
| TaqI | TCGA | 2 cut(s) | 507, 869 |
| TasI | AATT | 5 cut(s) | 131, 311, 630, 738, 824 |
| TauI | GCSGC | 1 cut(s) | 755 |
| TfiI | GAWTC | 5 cut(s) | 299, 530, 584, 877, 884 |
| Tru1I | TTAA | 1 cut(s) | 306 |
| Tru9I | TTAA | 1 cut(s) | 306 |
| TscAI | CASTG | 1 cut(s) | 132 |
| TseFI | GTSAC | 1 cut(s) | 341 |
| TseI | GCWGC | 2 cut(s) | 404, 656 |
| Tsp45I | GTSAC | 1 cut(s) | 341 |
| TspDTI | ATGAA | 2 cut(s) | 108, 197 |
| TspGWI | ACGGA | 2 cut(s) | 143, 407 |
| TspRI | CASTG | 1 cut(s) | 132 |
| Tth111I | GACNNNGTC | 1 cut(s) | 262 |
| VpaK11BI | GGWCC | 1 cut(s) | 820 |
| XapI | RAATTY | 1 cut(s) | 738 |
| XceI | RCATGY | 1 cut(s) | 541 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 523 |
| XmiI | GTMKAC | 3 cut(s) | 8, 286, 411 |
| XmnI | GAANNNNTTC | 1 cut(s) | 219 |
| XspI | CTAG | 1 cut(s) | 837 |