Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 392 |
| AciI | CCGC | 4 cut(s) | 7, 461, 732, 900 |
| AclI | AACGTT | 1 cut(s) | 292 |
| AclWI | GGATC | 5 cut(s) | 17, 137, 623, 1434, 1447 |
| AcoI | YGGCCR | 1 cut(s) | 159 |
| AcsI | RAATTY | 3 cut(s) | 260, 521, 1363 |
| AcuI | CTGAAG | 2 cut(s) | 605, 1449 |
| AfaI | GTAC | 3 cut(s) | 553, 909, 1357 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 392, 1449 |
| AgeI | ACCGGT | 1 cut(s) | 1135 |
| AgsI | TTSAA | 6 cut(s) | 847, 973, 983, 1040, 1085, 1130 |
| AjiI | CACGTC | 1 cut(s) | 1261 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1328, 1360 |
| AluBI | AGCT | 2 cut(s) | 625, 722 |
| AluI | AGCT | 2 cut(s) | 625, 722 |
| Alw26I | GTCTC | 3 cut(s) | 476, 1055, 1284 |
| AlwI | GGATC | 5 cut(s) | 17, 137, 623, 1434, 1447 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1097 |
| AoxI | GGCC | 2 cut(s) | 159, 454 |
| ApeKI | GCWGC | 1 cut(s) | 622 |
| ApoI | RAATTY | 3 cut(s) | 260, 521, 1363 |
| AsiGI | ACCGGT | 1 cut(s) | 1135 |
| AspS9I | GGNCC | 1 cut(s) | 1452 |
| AsuHPI | GGTGA | 4 cut(s) | 569, 667, 1004, 1405 |
| AvaII | GGWCC | 1 cut(s) | 1452 |
| AxyI | CCTNAGG | 1 cut(s) | 789 |
| BalI | TGGCCA | 1 cut(s) | 161 |
| BamHI | GGATCC | 1 cut(s) | 1439 |
| BanII | GRGCYC | 1 cut(s) | 1352 |
| BauI | CACGAG | 1 cut(s) | 1460 |
| BbsI | GAAGAC | 2 cut(s) | 593, 1263 |
| BbvI | GCAGC | 1 cut(s) | 634 |
| BccI | CCATC | 7 cut(s) | 58, 386, 394, 542, 861, 1049, 1103 |
| BceAI | ACGGC | 1 cut(s) | 107 |
| BciVI | GTATCC | 1 cut(s) | 427 |
| BclI | TGATCA | 1 cut(s) | 886 |
| BcoDI | GTCTC | 3 cut(s) | 476, 1055, 1284 |
| BfaI | CTAG | 6 cut(s) | 408, 450, 735, 963, 1284, 1407 |
| BfuI | GTATCC | 1 cut(s) | 427 |
| BisI | GCNGC | 2 cut(s) | 623, 732 |
| BlsI | GCNGC | 2 cut(s) | 624, 733 |
| Bme18I | GGWCC | 1 cut(s) | 1452 |
| BmgBI | CACGTC | 1 cut(s) | 1261 |
| BmgT120I | GGNCC | 1 cut(s) | 1452 |
| BmiI | GGNNCC | 2 cut(s) | 1441, 1454 |
| BmrI | ACTGGG | 1 cut(s) | 286 |
| BmsI | GCATC | 1 cut(s) | 609 |
| BmuI | ACTGGG | 1 cut(s) | 286 |
| BpiI | GAAGAC | 2 cut(s) | 593, 1263 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 248, 280, 929, 961 |
| BpmI | CTGGAG | 1 cut(s) | 1263 |
| BpuEI | CTTGAG | 1 cut(s) | 586 |
| BsaJI | CCNNGG | 2 cut(s) | 350, 477 |
| BsaWI | WCCGGW | 1 cut(s) | 1135 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1054, 1084 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 392, 1449 |
| Bse118I | RCCGGY | 1 cut(s) | 1135 |
| Bse1I | ACTGG | 2 cut(s) | 281, 1091 |
| Bse21I | CCTNAGG | 1 cut(s) | 789 |
| BseDI | CCNNGG | 2 cut(s) | 350, 477 |
| BseGI | GGATG | 7 cut(s) | 69, 553, 624, 799, 872, 1060, 1406 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 392, 1449 |
| BseMII | CTCAG | 3 cut(s) | 656, 960, 1407 |
| BseNI | ACTGG | 2 cut(s) | 281, 1091 |
| BseXI | GCAGC | 1 cut(s) | 634 |
| BsgI | GTGCAG | 1 cut(s) | 1283 |
| BshFI | GGCC | 2 cut(s) | 161, 456 |
| BshTI | ACCGGT | 1 cut(s) | 1135 |
| BsiSI | CCGG | 1 cut(s) | 1136 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 392, 1449 |
| BsmAI | GTCTC | 3 cut(s) | 476, 1055, 1284 |
| BsnI | GGCC | 2 cut(s) | 161, 456 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1352 |
| Bsp19I | CCATGG | 1 cut(s) | 350 |
| BspACI | CCGC | 4 cut(s) | 7, 461, 732, 900 |
| BspANI | GGCC | 2 cut(s) | 161, 456 |
| BspCNI | CTCAG | 3 cut(s) | 655, 959, 1408 |
| BspHI | TCATGA | 2 cut(s) | 106, 309 |
| BspLI | GGNNCC | 2 cut(s) | 1441, 1454 |
| BspPI | GGATC | 5 cut(s) | 17, 137, 623, 1434, 1447 |
| BsrFI | RCCGGY | 1 cut(s) | 1135 |
| BsrI | ACTGG | 2 cut(s) | 281, 1091 |
| BssAI | RCCGGY | 1 cut(s) | 1135 |
| BssECI | CCNNGG | 2 cut(s) | 350, 477 |
| BssSI | CACGAG | 1 cut(s) | 1460 |
| BssT1I | CCWWGG | 2 cut(s) | 350, 477 |
| Bst2BI | CACGAG | 1 cut(s) | 1460 |
| Bst4CI | ACNGT | 5 cut(s) | 136, 415, 427, 600, 1030 |
| Bst6I | CTCTTC | 1 cut(s) | 1415 |
| BstC8I | GCNNGC | 1 cut(s) | 465 |
| BstDEI | CTNAG | 6 cut(s) | 642, 789, 946, 1329, 1359, 1416 |
| BstDSI | CCRYGG | 1 cut(s) | 350 |
| BstF5I | GGATG | 7 cut(s) | 69, 553, 624, 799, 872, 1060, 1406 |
| BstMAI | GTCTC | 3 cut(s) | 476, 1055, 1284 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 13, 374, 728, 740 |
| BstV1I | GCAGC | 1 cut(s) | 634 |
| BstV2I | GAAGAC | 2 cut(s) | 593, 1263 |
| BstX2I | RGATCY | 2 cut(s) | 9, 1439 |
| BstYI | RGATCY | 2 cut(s) | 9, 1439 |
| Bsu36I | CCTNAGG | 1 cut(s) | 789 |
| BsuI | GTATCC | 1 cut(s) | 427 |
| BsuRI | GGCC | 2 cut(s) | 161, 456 |
| BtgI | CCRYGG | 1 cut(s) | 350 |
| BtrI | CACGTC | 1 cut(s) | 1261 |
| BtsCI | GGATG | 7 cut(s) | 69, 553, 624, 799, 872, 1060, 1406 |
| BtsIMutI | CAGTG | 2 cut(s) | 411, 525 |
| Cac8I | GCNNGC | 1 cut(s) | 465 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1097 |
| CciI | TCATGA | 2 cut(s) | 106, 309 |
| Cfr10I | RCCGGY | 1 cut(s) | 1135 |
| Cfr13I | GGNCC | 1 cut(s) | 1452 |
| CseI | GACGC | 1 cut(s) | 780 |
| Csp6I | GTAC | 3 cut(s) | 552, 908, 1356 |
| CspAI | ACCGGT | 1 cut(s) | 1135 |
| CviAII | CATG | 5 cut(s) | 107, 310, 351, 397, 593 |
| CviQI | GTAC | 3 cut(s) | 552, 908, 1356 |
| DdeI | CTNAG | 6 cut(s) | 642, 789, 946, 1329, 1359, 1416 |
| EaeI | YGGCCR | 1 cut(s) | 159 |
| Eam1104I | CTCTTC | 1 cut(s) | 1415 |
| EarI | CTCTTC | 1 cut(s) | 1415 |
| EciI | GGCGGA | 2 cut(s) | 22, 450 |
| Eco130I | CCWWGG | 2 cut(s) | 350, 477 |
| Eco147I | AGGCCT | 1 cut(s) | 456 |
| Eco24I | GRGCYC | 1 cut(s) | 1352 |
| Eco47I | GGWCC | 1 cut(s) | 1452 |
| Eco57I | CTGAAG | 2 cut(s) | 605, 1449 |
| Eco81I | CCTNAGG | 1 cut(s) | 789 |
| EcoRI | GAATTC | 3 cut(s) | 260, 521, 1363 |
| EcoT14I | CCWWGG | 2 cut(s) | 350, 477 |
| EcoT38I | GRGCYC | 1 cut(s) | 1352 |
| ErhI | CCWWGG | 2 cut(s) | 350, 477 |
| FaeI | CATG | 5 cut(s) | 110, 313, 354, 400, 596 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 203, 235, 644, 676 |
| FatI | CATG | 5 cut(s) | 106, 309, 350, 396, 592 |
| FauI | CCCGC | 1 cut(s) | 893 |
| FauNDI | CATATG | 1 cut(s) | 891 |
| FbaI | TGATCA | 1 cut(s) | 886 |
| Fnu4HI | GCNGC | 2 cut(s) | 623, 732 |
| FokI | GGATG | 7 cut(s) | 76, 560, 631, 806, 879, 1067, 1413 |
| FriOI | GRGCYC | 1 cut(s) | 1352 |
| Fsp4HI | GCNGC | 2 cut(s) | 623, 732 |
| FspBI | CTAG | 6 cut(s) | 408, 450, 735, 963, 1284, 1407 |
| GluI | GCNGC | 2 cut(s) | 623, 732 |
| GsuI | CTGGAG | 1 cut(s) | 1263 |
| HaeIII | GGCC | 2 cut(s) | 161, 456 |
| HapII | CCGG | 1 cut(s) | 1136 |
| HgaI | GACGC | 1 cut(s) | 780 |
| Hin1II | CATG | 5 cut(s) | 110, 313, 354, 400, 596 |
| HincII | GTYRAC | 2 cut(s) | 115, 821 |
| HindII | GTYRAC | 2 cut(s) | 115, 821 |
| HinfI | GANTC | 6 cut(s) | 45, 215, 442, 570, 944, 995 |
| HpaII | CCGG | 1 cut(s) | 1136 |
| HphI | GGTGA | 4 cut(s) | 569, 667, 1004, 1405 |
| Hpy166II | GTNNAC | 7 cut(s) | 36, 115, 139, 403, 821, 1223, 1452 |
| Hpy188I | TCNGA | 8 cut(s) | 201, 237, 289, 391, 618, 633, 949, 1417 |
| Hpy188III | TCNNGA | 7 cut(s) | 107, 122, 310, 439, 565, 707, 1242 |
| Hpy8I | GTNNAC | 7 cut(s) | 36, 115, 139, 403, 821, 1223, 1452 |
| Hpy99I | CGWCG | 1 cut(s) | 1448 |
| HpyCH4III | ACNGT | 5 cut(s) | 136, 415, 427, 600, 1030 |
| HpyCH4IV | ACGT | 3 cut(s) | 111, 292, 1260 |
| HpyCH4V | TGCA | 5 cut(s) | 16, 430, 622, 826, 1264 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 13, 374, 728, 740 |
| HpyF3I | CTNAG | 6 cut(s) | 642, 789, 946, 1329, 1359, 1416 |
| HpySE526I | ACGT | 3 cut(s) | 111, 292, 1260 |
| Hsp92II | CATG | 5 cut(s) | 110, 313, 354, 400, 596 |
| Ksp22I | TGATCA | 1 cut(s) | 886 |
| LmnI | GCTCC | 3 cut(s) | 388, 719, 912 |
| Lsp1109I | GCAGC | 1 cut(s) | 634 |
| LweI | GCATC | 1 cut(s) | 609 |
| MaeI | CTAG | 6 cut(s) | 408, 450, 735, 963, 1284, 1407 |
| MaeII | ACGT | 3 cut(s) | 111, 292, 1260 |
| MaeIII | GTNAC | 2 cut(s) | 1030, 1042 |
| MflI | RGATCY | 2 cut(s) | 9, 1439 |
| MhlI | GDGCHC | 1 cut(s) | 1352 |
| MlsI | TGGCCA | 1 cut(s) | 161 |
| MluCI | AATT | 4 cut(s) | 260, 521, 724, 1363 |
| MluNI | TGGCCA | 1 cut(s) | 161 |
| MlyI | GAGTC | 3 cut(s) | 54, 224, 938 |
| MmeI | TCCRAC | 1 cut(s) | 656 |
| Mox20I | TGGCCA | 1 cut(s) | 161 |
| MscI | TGGCCA | 1 cut(s) | 161 |
| MseI | TTAA | 3 cut(s) | 339, 422, 852 |
| Msp20I | TGGCCA | 1 cut(s) | 161 |
| MspI | CCGG | 1 cut(s) | 1136 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 13, 374, 728, 740 |
| NcoI | CCATGG | 1 cut(s) | 350 |
| NdeI | CATATG | 1 cut(s) | 891 |
| NlaIII | CATG | 5 cut(s) | 110, 313, 354, 400, 596 |
| NlaIV | GGNNCC | 2 cut(s) | 1441, 1454 |
| NmuCI | GTSAC | 1 cut(s) | 1042 |
| PagI | TCATGA | 2 cut(s) | 106, 309 |
| PceI | AGGCCT | 1 cut(s) | 456 |
| PfeI | GAWTC | 3 cut(s) | 442, 570, 995 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 392 |
| PinAI | ACCGGT | 1 cut(s) | 1135 |
| PkrI | GCNGC | 2 cut(s) | 624, 733 |
| PleI | GAGTC | 3 cut(s) | 53, 223, 938 |
| PpsI | GAGTC | 3 cut(s) | 53, 223, 938 |
| Psp1406I | AACGTT | 1 cut(s) | 292 |
| PspN4I | GGNNCC | 2 cut(s) | 1441, 1454 |
| PspPI | GGNCC | 1 cut(s) | 1452 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1097 |
| PsuI | RGATCY | 2 cut(s) | 9, 1439 |
| RsaI | GTAC | 3 cut(s) | 553, 909, 1357 |
| RsaNI | GTAC | 3 cut(s) | 552, 908, 1356 |
| SaqAI | TTAA | 3 cut(s) | 339, 422, 852 |
| SatI | GCNGC | 2 cut(s) | 623, 732 |
| Sau96I | GGNCC | 1 cut(s) | 1452 |
| SchI | GAGTC | 3 cut(s) | 54, 224, 938 |
| SduI | GDGCHC | 1 cut(s) | 1352 |
| SfaNI | GCATC | 1 cut(s) | 609 |
| SinI | GGWCC | 1 cut(s) | 1452 |
| SmlI | CTYRAG | 1 cut(s) | 565 |
| SmoI | CTYRAG | 1 cut(s) | 565 |
| Sse9I | AATT | 4 cut(s) | 260, 521, 724, 1363 |
| SseBI | AGGCCT | 1 cut(s) | 456 |
| SsiI | CCGC | 4 cut(s) | 7, 461, 732, 900 |
| SspI | AATATT | 1 cut(s) | 284 |
| SspMI | CTAG | 6 cut(s) | 408, 450, 735, 963, 1284, 1407 |
| StuI | AGGCCT | 1 cut(s) | 456 |
| StyI | CCWWGG | 2 cut(s) | 350, 477 |
| TaaI | ACNGT | 5 cut(s) | 136, 415, 427, 600, 1030 |
| TaiI | ACGT | 3 cut(s) | 114, 295, 1263 |
| TaqI | TCGA | 5 cut(s) | 325, 708, 872, 1107, 1446 |
| TasI | AATT | 4 cut(s) | 260, 521, 724, 1363 |
| TatI | WGTACW | 1 cut(s) | 1355 |
| TauI | GCSGC | 1 cut(s) | 734 |
| TfiI | GAWTC | 3 cut(s) | 442, 570, 995 |
| Tru1I | TTAA | 3 cut(s) | 339, 422, 852 |
| Tru9I | TTAA | 3 cut(s) | 339, 422, 852 |
| TscAI | CASTG | 2 cut(s) | 418, 532 |
| TseFI | GTSAC | 1 cut(s) | 1042 |
| TseI | GCWGC | 1 cut(s) | 622 |
| Tsp45I | GTSAC | 1 cut(s) | 1042 |
| TspDTI | ATGAA | 5 cut(s) | 95, 298, 534, 609, 890 |
| TspGWI | ACGGA | 4 cut(s) | 329, 925, 990, 1432 |
| TspRI | CASTG | 2 cut(s) | 418, 532 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 392 |
| VpaK11BI | GGWCC | 1 cut(s) | 1452 |
| XapI | RAATTY | 3 cut(s) | 260, 521, 1363 |
| XspI | CTAG | 6 cut(s) | 408, 450, 735, 963, 1284, 1407 |