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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 289 |
| AccBSI | CCGCTC | 1 cut(s) | 52 |
| AccI | GTMKAC | 2 cut(s) | 211, 536 |
| AccII | CGCG | 1 cut(s) | 628 |
| AciI | CCGC | 6 cut(s) | 52, 308, 554, 626, 671, 679 |
| AclWI | GGATC | 3 cut(s) | 503, 516, 577 |
| AcsI | RAATTY | 2 cut(s) | 38, 657 |
| AcuI | CTGAAG | 1 cut(s) | 185 |
| AfaI | GTAC | 1 cut(s) | 754 |
| AflIII | ACRYGT | 1 cut(s) | 462 |
| AgsI | TTSAA | 3 cut(s) | 8, 549, 789 |
| AjnI | CCWGG | 2 cut(s) | 58, 153 |
| AluBI | AGCT | 1 cut(s) | 329 |
| AluI | AGCT | 1 cut(s) | 329 |
| Alw26I | GTCTC | 3 cut(s) | 195, 278, 314 |
| AlwI | GGATC | 3 cut(s) | 503, 516, 577 |
| AoxI | GGCC | 1 cut(s) | 373 |
| ApaI | GGGCCC | 1 cut(s) | 377 |
| ApeKI | GCWGC | 3 cut(s) | 329, 332, 575 |
| ApoI | RAATTY | 2 cut(s) | 38, 657 |
| AspLEI | GCGC | 1 cut(s) | 117 |
| AspS9I | GGNCC | 3 cut(s) | 373, 374, 739 |
| AsuC2I | CCSGG | 1 cut(s) | 377 |
| AsuHPI | GGTGA | 2 cut(s) | 167, 278 |
| AvaII | GGWCC | 1 cut(s) | 739 |
| BaeGI | GKGCMC | 1 cut(s) | 377 |
| BamHI | GGATCC | 1 cut(s) | 508 |
| BanI | GGYRCC | 1 cut(s) | 289 |
| BanII | GRGCYC | 1 cut(s) | 377 |
| BbsI | GAAGAC | 1 cut(s) | 480 |
| BbvI | GCAGC | 3 cut(s) | 316, 319, 562 |
| BccI | CCATC | 3 cut(s) | 132, 250, 256 |
| BceAI | ACGGC | 3 cut(s) | 114, 303, 321 |
| BciT130I | CCWGG | 2 cut(s) | 60, 155 |
| BciVI | GTATCC | 1 cut(s) | 19 |
| BcnI | CCSGG | 1 cut(s) | 377 |
| BcoDI | GTCTC | 3 cut(s) | 195, 278, 314 |
| BfaI | CTAG | 1 cut(s) | 756 |
| BfmI | CTRYAG | 1 cut(s) | 333 |
| BfuI | GTATCC | 1 cut(s) | 19 |
| BisI | GCNGC | 4 cut(s) | 330, 333, 576, 672 |
| BlsI | GCNGC | 4 cut(s) | 331, 334, 577, 673 |
| Bme1390I | CCNGG | 3 cut(s) | 60, 155, 377 |
| Bme18I | GGWCC | 1 cut(s) | 739 |
| BmgT120I | GGNCC | 3 cut(s) | 373, 374, 739 |
| BmiI | GGNNCC | 5 cut(s) | 57, 291, 375, 510, 594 |
| BmrFI | CCNGG | 3 cut(s) | 60, 155, 377 |
| BpiI | GAAGAC | 1 cut(s) | 480 |
| BpuMI | CCSGG | 1 cut(s) | 377 |
| BsaI | GGTCTC | 1 cut(s) | 314 |
| BsaJI | CCNNGG | 4 cut(s) | 59, 110, 315, 512 |
| BsaWI | WCCGGW | 1 cut(s) | 566 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 607, 637 |
| Bse118I | RCCGGY | 2 cut(s) | 292, 667 |
| Bse1I | ACTGG | 1 cut(s) | 98 |
| BseBI | CCWGG | 2 cut(s) | 60, 155 |
| BseDI | CCNNGG | 4 cut(s) | 59, 110, 315, 512 |
| BseGI | GGATG | 2 cut(s) | 19, 124 |
| BseMII | CTCAG | 1 cut(s) | 821 |
| BseNI | ACTGG | 1 cut(s) | 98 |
| BseRI | GAGGAG | 1 cut(s) | 639 |
| BseSI | GKGCMC | 1 cut(s) | 377 |
| BseXI | GCAGC | 3 cut(s) | 316, 319, 562 |
| BseYI | CCCAGC | 1 cut(s) | 584 |
| Bsh1236I | CGCG | 1 cut(s) | 628 |
| BshFI | GGCC | 1 cut(s) | 375 |
| BshNI | GGYRCC | 1 cut(s) | 289 |
| BsiSI | CCGG | 4 cut(s) | 293, 377, 567, 668 |
| BslFI | GGGAC | 2 cut(s) | 584, 701 |
| BsmAI | GTCTC | 3 cut(s) | 195, 278, 314 |
| BsmBI | CGTCTC | 1 cut(s) | 278 |
| BsmFI | GGGAC | 2 cut(s) | 584, 701 |
| BsmI | GAATGC | 1 cut(s) | 817 |
| BsnI | GGCC | 1 cut(s) | 375 |
| Bso31I | GGTCTC | 1 cut(s) | 314 |
| Bsp120I | GGGCCC | 1 cut(s) | 373 |
| Bsp1286I | GDGCHC | 1 cut(s) | 377 |
| Bsp143I | GATC | 3 cut(s) | 421, 508, 569 |
| Bsp19I | CCATGG | 1 cut(s) | 110 |
| BspACI | CCGC | 6 cut(s) | 52, 308, 554, 626, 671, 679 |
| BspANI | GGCC | 1 cut(s) | 375 |
| BspCNI | CTCAG | 1 cut(s) | 820 |
| BspFNI | CGCG | 1 cut(s) | 628 |
| BspLI | GGNNCC | 5 cut(s) | 57, 291, 375, 510, 594 |
| BspMAI | CTGCAG | 1 cut(s) | 337 |
| BspPI | GGATC | 3 cut(s) | 503, 516, 577 |
| BspT107I | GGYRCC | 1 cut(s) | 289 |
| BspTNI | GGTCTC | 1 cut(s) | 314 |
| BsrBI | CCGCTC | 1 cut(s) | 52 |
| BsrFI | RCCGGY | 2 cut(s) | 292, 667 |
| BsrI | ACTGG | 1 cut(s) | 98 |
| BssAI | RCCGGY | 2 cut(s) | 292, 667 |
| BssECI | CCNNGG | 4 cut(s) | 59, 110, 315, 512 |
| BssMI | GATC | 3 cut(s) | 421, 508, 569 |
| BssNAI | GTATAC | 1 cut(s) | 212 |
| BssT1I | CCWWGG | 1 cut(s) | 110 |
| Bst1107I | GTATAC | 1 cut(s) | 212 |
| Bst2UI | CCWGG | 2 cut(s) | 60, 155 |
| Bst4CI | ACNGT | 4 cut(s) | 179, 187, 516, 541 |
| Bst6I | CTCTTC | 1 cut(s) | 495 |
| BstDEI | CTNAG | 1 cut(s) | 807 |
| BstDSI | CCRYGG | 3 cut(s) | 110, 315, 512 |
| BstEII | GGTNACC | 1 cut(s) | 562 |
| BstF5I | GGATG | 2 cut(s) | 19, 124 |
| BstFNI | CGCG | 1 cut(s) | 628 |
| BstHHI | GCGC | 1 cut(s) | 117 |
| BstKTI | GATC | 3 cut(s) | 424, 511, 572 |
| BstMAI | GTCTC | 3 cut(s) | 195, 278, 314 |
| BstMBI | GATC | 3 cut(s) | 421, 508, 569 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 581, 769 |
| BstNI | CCWGG | 2 cut(s) | 60, 155 |
| BstNSI | RCATGY | 1 cut(s) | 466 |
| BstPI | GGTNACC | 1 cut(s) | 562 |
| BstSCI | CCNGG | 3 cut(s) | 58, 153, 375 |
| BstSFI | CTRYAG | 1 cut(s) | 333 |
| BstSLI | GKGCMC | 1 cut(s) | 377 |
| BstUI | CGCG | 1 cut(s) | 628 |
| BstV1I | GCAGC | 3 cut(s) | 316, 319, 562 |
| BstV2I | GAAGAC | 1 cut(s) | 480 |
| BstX2I | RGATCY | 2 cut(s) | 508, 569 |
| BstYI | RGATCY | 2 cut(s) | 508, 569 |
| BstZ17I | GTATAC | 1 cut(s) | 212 |
| BsuI | GTATCC | 1 cut(s) | 19 |
| BsuRI | GGCC | 1 cut(s) | 375 |
| BtgI | CCRYGG | 3 cut(s) | 110, 315, 512 |
| BtsCI | GGATG | 2 cut(s) | 19, 124 |
| BtsIMutI | CAGTG | 1 cut(s) | 91 |
| CfoI | GCGC | 1 cut(s) | 117 |
| Cfr10I | RCCGGY | 2 cut(s) | 292, 667 |
| Cfr13I | GGNCC | 3 cut(s) | 373, 374, 739 |
| Csp6I | GTAC | 1 cut(s) | 753 |
| CviAII | CATG | 3 cut(s) | 111, 442, 463 |
| CviJI | RGCY | 7 cut(s) | 101, 314, 329, 375, 402, 408, 439 |
| CviKI_1 | RGCY | 7 cut(s) | 101, 314, 329, 375, 402, 408, 439 |
| CviQI | GTAC | 1 cut(s) | 753 |
| DdeI | CTNAG | 1 cut(s) | 807 |
| DpnI | GATC | 3 cut(s) | 423, 510, 571 |
| DpnII | GATC | 3 cut(s) | 421, 508, 569 |
| Eam1104I | CTCTTC | 1 cut(s) | 495 |
| EarI | CTCTTC | 1 cut(s) | 495 |
| Eco130I | CCWWGG | 1 cut(s) | 110 |
| Eco24I | GRGCYC | 1 cut(s) | 377 |
| Eco31I | GGTCTC | 1 cut(s) | 314 |
| Eco47I | GGWCC | 1 cut(s) | 739 |
| Eco57I | CTGAAG | 1 cut(s) | 185 |
| Eco91I | GGTNACC | 1 cut(s) | 562 |
| EcoO109I | RGGNCCY | 1 cut(s) | 373 |
| EcoO65I | GGTNACC | 1 cut(s) | 562 |
| EcoRI | GAATTC | 1 cut(s) | 38 |
| EcoRII | CCWGG | 2 cut(s) | 58, 153 |
| EcoT14I | CCWWGG | 1 cut(s) | 110 |
| EcoT38I | GRGCYC | 1 cut(s) | 377 |
| ErhI | CCWWGG | 1 cut(s) | 110 |
| Esp3I | CGTCTC | 1 cut(s) | 278 |
| FaeI | CATG | 3 cut(s) | 114, 445, 466 |
| FaiI | YATR | 8 cut(s) | 48, 112, 212, 326, 396, 443, 464, 607 |
| FaqI | GGGAC | 2 cut(s) | 584, 701 |
| FatI | CATG | 3 cut(s) | 110, 441, 462 |
| FauI | CCCGC | 1 cut(s) | 45 |
| FblI | GTMKAC | 2 cut(s) | 211, 536 |
| Fnu4HI | GCNGC | 4 cut(s) | 330, 333, 576, 672 |
| FokI | GGATG | 2 cut(s) | 26, 111 |
| FriOI | GRGCYC | 1 cut(s) | 377 |
| Fsp4HI | GCNGC | 4 cut(s) | 330, 333, 576, 672 |
| FspBI | CTAG | 1 cut(s) | 756 |
| GlaI | GCGC | 1 cut(s) | 116 |
| GluI | GCNGC | 4 cut(s) | 330, 333, 576, 672 |
| GsaI | CCCAGC | 1 cut(s) | 588 |
| HaeIII | GGCC | 1 cut(s) | 375 |
| HapII | CCGG | 4 cut(s) | 293, 377, 567, 668 |
| HhaI | GCGC | 1 cut(s) | 117 |
| Hin1II | CATG | 3 cut(s) | 114, 445, 466 |
| Hin6I | GCGC | 1 cut(s) | 115 |
| HinP1I | GCGC | 1 cut(s) | 115 |
| HincII | GTYRAC | 1 cut(s) | 232 |
| HindII | GTYRAC | 1 cut(s) | 232 |
| HinfI | GANTC | 5 cut(s) | 224, 455, 476, 796, 803 |
| HpaI | GTTAAC | 1 cut(s) | 232 |
| HpaII | CCGG | 4 cut(s) | 293, 377, 567, 668 |
| HphI | GGTGA | 2 cut(s) | 167, 278 |
| Hpy166II | GTNNAC | 5 cut(s) | 80, 212, 232, 382, 537 |
| Hpy188I | TCNGA | 4 cut(s) | 165, 183, 259, 664 |
| Hpy188III | TCNNGA | 3 cut(s) | 281, 494, 800 |
| Hpy8I | GTNNAC | 5 cut(s) | 80, 212, 232, 382, 537 |
| Hpy99I | CGWCG | 1 cut(s) | 198 |
| HpyAV | CCTTC | 4 cut(s) | 160, 555, 725, 753 |
| HpyCH4III | ACNGT | 4 cut(s) | 179, 187, 516, 541 |
| HpyCH4V | TGCA | 5 cut(s) | 335, 388, 427, 699, 725 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 581, 769 |
| HpyF3I | CTNAG | 1 cut(s) | 807 |
| Hsp92II | CATG | 3 cut(s) | 114, 445, 466 |
| HspAI | GCGC | 1 cut(s) | 115 |
| KspAI | GTTAAC | 1 cut(s) | 232 |
| Kzo9I | GATC | 3 cut(s) | 421, 508, 569 |
| Lsp1109I | GCAGC | 3 cut(s) | 316, 319, 562 |
| MaeI | CTAG | 1 cut(s) | 756 |
| MaeIII | GTNAC | 4 cut(s) | 266, 301, 562, 631 |
| MalI | GATC | 3 cut(s) | 423, 510, 571 |
| MbiI | CCGCTC | 1 cut(s) | 52 |
| MboI | GATC | 3 cut(s) | 421, 508, 569 |
| MboII | GAAGA | 3 cut(s) | 482, 485, 777 |
| MfeI | CAATTG | 1 cut(s) | 236 |
| MflI | RGATCY | 2 cut(s) | 508, 569 |
| MhlI | GDGCHC | 1 cut(s) | 377 |
| MluCI | AATT | 8 cut(s) | 8, 32, 38, 103, 132, 236, 657, 743 |
| MlyI | GAGTC | 1 cut(s) | 470 |
| MmeI | TCCRAC | 1 cut(s) | 483 |
| MnlI | CCTC | 9 cut(s) | 138, 364, 490, 498, 532, 633, 660, 675, 721 |
| MseI | TTAA | 2 cut(s) | 135, 231 |
| MspI | CCGG | 4 cut(s) | 293, 377, 567, 668 |
| MspR9I | CCNGG | 3 cut(s) | 60, 155, 377 |
| MunI | CAATTG | 1 cut(s) | 236 |
| Mva1269I | GAATGC | 1 cut(s) | 817 |
| MvaI | CCWGG | 2 cut(s) | 60, 155 |
| MvnI | CGCG | 1 cut(s) | 628 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 581, 769 |
| NciI | CCSGG | 1 cut(s) | 377 |
| NcoI | CCATGG | 1 cut(s) | 110 |
| NdeII | GATC | 3 cut(s) | 421, 508, 569 |
| NlaIII | CATG | 3 cut(s) | 114, 445, 466 |
| NlaIV | GGNNCC | 5 cut(s) | 57, 291, 375, 510, 594 |
| NmuCI | GTSAC | 1 cut(s) | 266 |
| NspI | RCATGY | 1 cut(s) | 466 |
| PciI | ACATGT | 1 cut(s) | 462 |
| PctI | GAATGC | 1 cut(s) | 817 |
| PfeI | GAWTC | 4 cut(s) | 224, 455, 796, 803 |
| PflFI | GACNNNGTC | 1 cut(s) | 187 |
| PfoI | TCCNGGA | 1 cut(s) | 153 |
| PkrI | GCNGC | 4 cut(s) | 331, 334, 577, 673 |
| PleI | GAGTC | 1 cut(s) | 470 |
| PpsI | GAGTC | 1 cut(s) | 470 |
| PscI | ACATGT | 1 cut(s) | 462 |
| Psp6I | CCWGG | 2 cut(s) | 58, 153 |
| PspEI | GGTNACC | 1 cut(s) | 562 |
| PspFI | CCCAGC | 1 cut(s) | 584 |
| PspGI | CCWGG | 2 cut(s) | 58, 153 |
| PspN4I | GGNNCC | 5 cut(s) | 57, 291, 375, 510, 594 |
| PspOMI | GGGCCC | 1 cut(s) | 373 |
| PspPI | GGNCC | 3 cut(s) | 373, 374, 739 |
| PstI | CTGCAG | 1 cut(s) | 337 |
| PsuI | RGATCY | 2 cut(s) | 508, 569 |
| PsyI | GACNNNGTC | 1 cut(s) | 187 |
| RsaI | GTAC | 1 cut(s) | 754 |
| RsaNI | GTAC | 1 cut(s) | 753 |
| SaqAI | TTAA | 2 cut(s) | 135, 231 |
| SatI | GCNGC | 4 cut(s) | 330, 333, 576, 672 |
| Sau3AI | GATC | 3 cut(s) | 421, 508, 569 |
| Sau96I | GGNCC | 3 cut(s) | 373, 374, 739 |
| SchI | GAGTC | 1 cut(s) | 470 |
| ScrFI | CCNGG | 3 cut(s) | 60, 155, 377 |
| SduI | GDGCHC | 1 cut(s) | 377 |
| SetI | ASST | 7 cut(s) | 303, 331, 490, 501, 686, 813, 832 |
| SfcI | CTRYAG | 1 cut(s) | 333 |
| SinI | GGWCC | 1 cut(s) | 739 |
| Sse9I | AATT | 8 cut(s) | 8, 32, 38, 103, 132, 236, 657, 743 |
| SsiI | CCGC | 6 cut(s) | 52, 308, 554, 626, 671, 679 |
| SspMI | CTAG | 1 cut(s) | 756 |
| StyD4I | CCNGG | 3 cut(s) | 58, 153, 375 |
| StyI | CCWWGG | 1 cut(s) | 110 |
| TaaI | ACNGT | 4 cut(s) | 179, 187, 516, 541 |
| TaqI | TCGA | 1 cut(s) | 432 |
| TasI | AATT | 8 cut(s) | 8, 32, 38, 103, 132, 236, 657, 743 |
| TauI | GCSGC | 1 cut(s) | 674 |
| TfiI | GAWTC | 4 cut(s) | 224, 455, 796, 803 |
| Tru1I | TTAA | 2 cut(s) | 135, 231 |
| Tru9I | TTAA | 2 cut(s) | 135, 231 |
| TscAI | CASTG | 1 cut(s) | 98 |
| TseFI | GTSAC | 1 cut(s) | 266 |
| TseI | GCWGC | 3 cut(s) | 329, 332, 575 |
| Tsp45I | GTSAC | 1 cut(s) | 266 |
| TspGWI | ACGGA | 1 cut(s) | 332 |
| TspRI | CASTG | 1 cut(s) | 98 |
| Tth111I | GACNNNGTC | 1 cut(s) | 187 |
| VpaK11BI | GGWCC | 1 cut(s) | 739 |
| XapI | RAATTY | 2 cut(s) | 38, 657 |
| XceI | RCATGY | 1 cut(s) | 466 |
| XmiI | GTMKAC | 2 cut(s) | 211, 536 |
| XspI | CTAG | 1 cut(s) | 756 |