Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 58 - 127 | 2e-11 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 19 |
| AatII | GACGTC | 1 cut(s) | 229 |
| Acc36I | ACCTGC | 2 cut(s) | 19, 613 |
| AciI | CCGC | 4 cut(s) | 125, 320, 1000, 1003 |
| AclWI | GGATC | 7 cut(s) | 398, 524, 590, 603, 623, 632, 758 |
| AcoI | YGGCCR | 1 cut(s) | 817 |
| AcsI | RAATTY | 2 cut(s) | 283, 434 |
| AcuI | CTGAAG | 2 cut(s) | 372, 1074 |
| AcvI | CACGTG | 1 cut(s) | 635 |
| AcyI | GRCGYC | 1 cut(s) | 226 |
| AfaI | GTAC | 3 cut(s) | 384, 412, 668 |
| AfeI | AGCGCT | 1 cut(s) | 468 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 331, 392, 1071 |
| AgsI | TTSAA | 1 cut(s) | 1049 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 148 |
| AjiI | CACGTC | 1 cut(s) | 92 |
| AjnI | CCWGG | 4 cut(s) | 96, 105, 350, 429 |
| AluBI | AGCT | 3 cut(s) | 561, 878, 886 |
| AluI | AGCT | 3 cut(s) | 561, 878, 886 |
| Alw26I | GTCTC | 2 cut(s) | 707, 950 |
| AlwI | GGATC | 7 cut(s) | 398, 524, 590, 603, 623, 632, 758 |
| Ama87I | CYCGRG | 1 cut(s) | 1013 |
| Aor51HI | AGCGCT | 1 cut(s) | 468 |
| AoxI | GGCC | 2 cut(s) | 610, 817 |
| ApeKI | GCWGC | 4 cut(s) | 25, 571, 619, 1021 |
| ApoI | RAATTY | 2 cut(s) | 283, 434 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 216, 248 |
| AseI | ATTAAT | 1 cut(s) | 723 |
| AspLEI | GCGC | 1 cut(s) | 469 |
| AspS9I | GGNCC | 2 cut(s) | 187, 322 |
| AsuC2I | CCSGG | 2 cut(s) | 408, 969 |
| AsuHPI | GGTGA | 2 cut(s) | 92, 419 |
| AvaI | CYCGRG | 1 cut(s) | 1013 |
| AvaII | GGWCC | 2 cut(s) | 187, 322 |
| AxyI | CCTNAGG | 2 cut(s) | 566, 614 |
| BalI | TGGCCA | 1 cut(s) | 819 |
| BamHI | GGATCC | 1 cut(s) | 595 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 782, 814 |
| BbrPI | CACGTG | 1 cut(s) | 635 |
| BbsI | GAAGAC | 1 cut(s) | 785 |
| BbvI | GCAGC | 4 cut(s) | 12, 558, 606, 1033 |
| BccI | CCATC | 4 cut(s) | 58, 391, 542, 919 |
| BciT130I | CCWGG | 4 cut(s) | 98, 107, 352, 431 |
| BcnI | CCSGG | 2 cut(s) | 408, 969 |
| BcoDI | GTCTC | 2 cut(s) | 707, 950 |
| BfaI | CTAG | 2 cut(s) | 374, 1071 |
| BfmI | CTRYAG | 2 cut(s) | 26, 620 |
| BfoI | RGCGCY | 1 cut(s) | 470 |
| BfuAI | ACCTGC | 2 cut(s) | 19, 613 |
| BglII | AGATCT | 1 cut(s) | 118 |
| BisI | GCNGC | 5 cut(s) | 26, 572, 620, 1001, 1022 |
| BlsI | GCNGC | 5 cut(s) | 27, 573, 621, 1002, 1023 |
| Bme1390I | CCNGG | 6 cut(s) | 98, 107, 352, 408, 431, 969 |
| Bme18I | GGWCC | 2 cut(s) | 187, 322 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 148 |
| BmeT110I | CYCGRG | 1 cut(s) | 1013 |
| BmgBI | CACGTC | 1 cut(s) | 92 |
| BmgT120I | GGNCC | 2 cut(s) | 187, 322 |
| BmiI | GGNNCC | 1 cut(s) | 597 |
| BmrFI | CCNGG | 6 cut(s) | 98, 107, 352, 408, 431, 969 |
| BmsI | GCATC | 2 cut(s) | 307, 868 |
| BpiI | GAAGAC | 1 cut(s) | 785 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 248, 280 |
| BpmI | CTGGAG | 1 cut(s) | 564 |
| Bpu10I | CCTNAGC | 1 cut(s) | 882 |
| BpuEI | CTTGAG | 1 cut(s) | 683 |
| BpuMI | CCSGG | 2 cut(s) | 408, 969 |
| BsaAI | YACGTR | 1 cut(s) | 635 |
| BsaHI | GRCGYC | 1 cut(s) | 226 |
| BsaI | GGTCTC | 2 cut(s) | 707, 950 |
| BsaJI | CCNNGG | 2 cut(s) | 350, 968 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 453, 483 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 331, 392, 1071 |
| Bse1I | ACTGG | 1 cut(s) | 547 |
| Bse21I | CCTNAGG | 2 cut(s) | 566, 614 |
| BseBI | CCWGG | 4 cut(s) | 98, 107, 352, 431 |
| BseDI | CCNNGG | 2 cut(s) | 350, 968 |
| BseGI | GGATG | 3 cut(s) | 69, 115, 402 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 331, 392, 1071 |
| BseMII | CTCAG | 5 cut(s) | 580, 593, 605, 873, 878 |
| BseNI | ACTGG | 1 cut(s) | 547 |
| BseRI | GAGGAG | 2 cut(s) | 83, 619 |
| BseXI | GCAGC | 4 cut(s) | 12, 558, 606, 1033 |
| BshFI | GGCC | 2 cut(s) | 612, 819 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1013 |
| BsiSI | CCGG | 2 cut(s) | 407, 968 |
| BslFI | GGGAC | 2 cut(s) | 333, 401 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 331, 392, 1071 |
| BsmAI | GTCTC | 2 cut(s) | 707, 950 |
| BsmFI | GGGAC | 2 cut(s) | 333, 401 |
| BsnI | GGCC | 2 cut(s) | 612, 819 |
| Bso31I | GGTCTC | 2 cut(s) | 707, 950 |
| BsoBI | CYCGRG | 1 cut(s) | 1013 |
| Bsp143I | GATC | 9 cut(s) | 118, 403, 529, 595, 628, 637, 750, 808, 870 |
| BspACI | CCGC | 4 cut(s) | 125, 320, 1000, 1003 |
| BspANI | GGCC | 2 cut(s) | 612, 819 |
| BspCNI | CTCAG | 5 cut(s) | 579, 594, 606, 874, 879 |
| BspLI | GGNNCC | 1 cut(s) | 597 |
| BspMAI | CTGCAG | 2 cut(s) | 30, 624 |
| BspMI | ACCTGC | 2 cut(s) | 19, 613 |
| BspPI | GGATC | 7 cut(s) | 398, 524, 590, 603, 623, 632, 758 |
| BspTNI | GGTCTC | 2 cut(s) | 707, 950 |
| BsrI | ACTGG | 1 cut(s) | 547 |
| BssECI | CCNNGG | 2 cut(s) | 350, 968 |
| BssMI | GATC | 9 cut(s) | 118, 403, 529, 595, 628, 637, 750, 808, 870 |
| BssNI | GRCGYC | 1 cut(s) | 226 |
| Bst2UI | CCWGG | 4 cut(s) | 98, 107, 352, 431 |
| Bst4CI | ACNGT | 6 cut(s) | 22, 136, 326, 415, 803, 961 |
| BstACI | GRCGYC | 1 cut(s) | 226 |
| BstBAI | YACGTR | 1 cut(s) | 635 |
| BstDEI | CTNAG | 5 cut(s) | 566, 602, 614, 882, 887 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1069 |
| BstF5I | GGATG | 3 cut(s) | 69, 115, 402 |
| BstH2I | RGCGCY | 1 cut(s) | 470 |
| BstHHI | GCGC | 1 cut(s) | 469 |
| BstKTI | GATC | 9 cut(s) | 121, 406, 532, 598, 631, 640, 753, 811, 873 |
| BstMAI | GTCTC | 2 cut(s) | 707, 950 |
| BstMBI | GATC | 9 cut(s) | 118, 403, 529, 595, 628, 637, 750, 808, 870 |
| BstNI | CCWGG | 4 cut(s) | 98, 107, 352, 431 |
| BstSCI | CCNGG | 6 cut(s) | 96, 105, 350, 406, 429, 967 |
| BstSFI | CTRYAG | 2 cut(s) | 26, 620 |
| BstV1I | GCAGC | 4 cut(s) | 12, 558, 606, 1033 |
| BstV2I | GAAGAC | 1 cut(s) | 785 |
| BstX2I | RGATCY | 2 cut(s) | 118, 595 |
| BstYI | RGATCY | 2 cut(s) | 118, 595 |
| Bsu36I | CCTNAGG | 2 cut(s) | 566, 614 |
| BsuRI | GGCC | 2 cut(s) | 612, 819 |
| BtgZI | GCGATG | 1 cut(s) | 938 |
| BtrI | CACGTC | 1 cut(s) | 92 |
| BtsCI | GGATG | 3 cut(s) | 69, 115, 402 |
| BtsIMutI | CAGTG | 1 cut(s) | 869 |
| BveI | ACCTGC | 2 cut(s) | 19, 613 |
| CfoI | GCGC | 1 cut(s) | 469 |
| Cfr13I | GGNCC | 2 cut(s) | 187, 322 |
| CpoI | CGGWCCG | 1 cut(s) | 322 |
| Csp6I | GTAC | 3 cut(s) | 383, 411, 667 |
| CspI | CGGWCCG | 1 cut(s) | 322 |
| CviQI | GTAC | 3 cut(s) | 383, 411, 667 |
| DdeI | CTNAG | 5 cut(s) | 566, 602, 614, 882, 887 |
| DpnI | GATC | 9 cut(s) | 120, 405, 531, 597, 630, 639, 752, 810, 872 |
| DpnII | GATC | 9 cut(s) | 118, 403, 529, 595, 628, 637, 750, 808, 870 |
| DraI | TTTAAA | 1 cut(s) | 310 |
| DriI | GACNNNNNGTC | 1 cut(s) | 148 |
| EaeI | YGGCCR | 1 cut(s) | 817 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 148 |
| EciI | GGCGGA | 1 cut(s) | 1018 |
| Eco147I | AGGCCT | 1 cut(s) | 612 |
| Eco31I | GGTCTC | 2 cut(s) | 707, 950 |
| Eco47I | GGWCC | 2 cut(s) | 187, 322 |
| Eco47III | AGCGCT | 1 cut(s) | 468 |
| Eco57I | CTGAAG | 2 cut(s) | 372, 1074 |
| Eco72I | CACGTG | 1 cut(s) | 635 |
| Eco81I | CCTNAGG | 2 cut(s) | 566, 614 |
| Eco88I | CYCGRG | 1 cut(s) | 1013 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1069 |
| EcoO109I | RGGNCCY | 1 cut(s) | 187 |
| EcoRI | GAATTC | 1 cut(s) | 434 |
| EcoRII | CCWGG | 4 cut(s) | 96, 105, 350, 429 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 645, 677 |
| FaqI | GGGAC | 2 cut(s) | 333, 401 |
| FauNDI | CATATG | 1 cut(s) | 1078 |
| Fnu4HI | GCNGC | 5 cut(s) | 26, 572, 620, 1001, 1022 |
| FokI | GGATG | 3 cut(s) | 76, 122, 409 |
| Fsp4HI | GCNGC | 5 cut(s) | 26, 572, 620, 1001, 1022 |
| FspBI | CTAG | 2 cut(s) | 374, 1071 |
| GlaI | GCGC | 1 cut(s) | 468 |
| GluI | GCNGC | 5 cut(s) | 26, 572, 620, 1001, 1022 |
| GsuI | CTGGAG | 1 cut(s) | 564 |
| HaeII | RGCGCY | 1 cut(s) | 470 |
| HaeIII | GGCC | 2 cut(s) | 612, 819 |
| HapII | CCGG | 2 cut(s) | 407, 968 |
| HhaI | GCGC | 1 cut(s) | 469 |
| Hin1I | GRCGYC | 1 cut(s) | 226 |
| Hin6I | GCGC | 1 cut(s) | 467 |
| HinP1I | GCGC | 1 cut(s) | 467 |
| HincII | GTYRAC | 2 cut(s) | 57, 208 |
| HindII | GTYRAC | 2 cut(s) | 57, 208 |
| HinfI | GANTC | 3 cut(s) | 215, 738, 929 |
| HpaII | CCGG | 2 cut(s) | 407, 968 |
| HphI | GGTGA | 2 cut(s) | 92, 419 |
| Hpy166II | GTNNAC | 3 cut(s) | 57, 208, 799 |
| Hpy188I | TCNGA | 7 cut(s) | 224, 289, 391, 512, 603, 934, 1090 |
| Hpy188III | TCNNGA | 4 cut(s) | 439, 472, 662, 881 |
| Hpy8I | GTNNAC | 3 cut(s) | 57, 208, 799 |
| Hpy99I | CGWCG | 4 cut(s) | 96, 228, 746, 965 |
| HpyAV | CCTTC | 5 cut(s) | 178, 247, 396, 741, 765 |
| HpyCH4III | ACNGT | 6 cut(s) | 22, 136, 326, 415, 803, 961 |
| HpyCH4IV | ACGT | 7 cut(s) | 91, 210, 226, 537, 586, 634, 782 |
| HpyCH4V | TGCA | 4 cut(s) | 28, 161, 622, 826 |
| HpyF3I | CTNAG | 5 cut(s) | 566, 602, 614, 882, 887 |
| HpySE526I | ACGT | 7 cut(s) | 91, 210, 226, 537, 586, 634, 782 |
| Hsp92I | GRCGYC | 1 cut(s) | 226 |
| HspAI | GCGC | 1 cut(s) | 467 |
| Kzo9I | GATC | 9 cut(s) | 118, 403, 529, 595, 628, 637, 750, 808, 870 |
| LmnI | GCTCC | 7 cut(s) | 289, 474, 558, 757, 883, 910, 1018 |
| Lsp1109I | GCAGC | 4 cut(s) | 12, 558, 606, 1033 |
| LweI | GCATC | 2 cut(s) | 307, 868 |
| MaeI | CTAG | 2 cut(s) | 374, 1071 |
| MaeII | ACGT | 7 cut(s) | 91, 210, 226, 537, 586, 634, 782 |
| MaeIII | GTNAC | 2 cut(s) | 538, 582 |
| MalI | GATC | 9 cut(s) | 120, 405, 531, 597, 630, 639, 752, 810, 872 |
| MboI | GATC | 9 cut(s) | 118, 403, 529, 595, 628, 637, 750, 808, 870 |
| MboII | GAAGA | 5 cut(s) | 128, 525, 790, 802, 947 |
| MfeI | CAATTG | 1 cut(s) | 644 |
| MflI | RGATCY | 2 cut(s) | 118, 595 |
| MlsI | TGGCCA | 1 cut(s) | 819 |
| MluCI | AATT | 7 cut(s) | 283, 434, 495, 644, 724, 846, 988 |
| MluNI | TGGCCA | 1 cut(s) | 819 |
| MlyI | GAGTC | 2 cut(s) | 224, 923 |
| MmeI | TCCRAC | 2 cut(s) | 247, 573 |
| Mox20I | TGGCCA | 1 cut(s) | 819 |
| MscI | TGGCCA | 1 cut(s) | 819 |
| MseI | TTAA | 3 cut(s) | 309, 723, 845 |
| Msp20I | TGGCCA | 1 cut(s) | 819 |
| MspI | CCGG | 2 cut(s) | 407, 968 |
| MspR9I | CCNGG | 6 cut(s) | 98, 107, 352, 408, 431, 969 |
| MunI | CAATTG | 1 cut(s) | 644 |
| MvaI | CCWGG | 4 cut(s) | 98, 107, 352, 431 |
| NciI | CCSGG | 2 cut(s) | 408, 969 |
| NdeI | CATATG | 1 cut(s) | 1078 |
| NdeII | GATC | 9 cut(s) | 118, 403, 529, 595, 628, 637, 750, 808, 870 |
| NlaIV | GGNNCC | 1 cut(s) | 597 |
| NmuCI | GTSAC | 1 cut(s) | 538 |
| PaqCI | CACCTGC | 1 cut(s) | 19 |
| PceI | AGGCCT | 1 cut(s) | 612 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 232 |
| PfeI | GAWTC | 1 cut(s) | 738 |
| PflFI | GACNNNGTC | 1 cut(s) | 784 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 5 cut(s) | 27, 573, 621, 1002, 1023 |
| PleI | GAGTC | 2 cut(s) | 223, 923 |
| PmaCI | CACGTG | 1 cut(s) | 635 |
| PmlI | CACGTG | 1 cut(s) | 635 |
| PpsI | GAGTC | 2 cut(s) | 223, 923 |
| Ppu21I | YACGTR | 1 cut(s) | 635 |
| PpuMI | RGGWCCY | 1 cut(s) | 187 |
| PshBI | ATTAAT | 1 cut(s) | 723 |
| Psp5II | RGGWCCY | 1 cut(s) | 187 |
| Psp6I | CCWGG | 4 cut(s) | 96, 105, 350, 429 |
| PspCI | CACGTG | 1 cut(s) | 635 |
| PspGI | CCWGG | 4 cut(s) | 96, 105, 350, 429 |
| PspN4I | GGNNCC | 1 cut(s) | 597 |
| PspPI | GGNCC | 2 cut(s) | 187, 322 |
| PspPPI | RGGWCCY | 1 cut(s) | 187 |
| PstI | CTGCAG | 2 cut(s) | 30, 624 |
| PsuI | RGATCY | 2 cut(s) | 118, 595 |
| PsyI | GACNNNGTC | 1 cut(s) | 784 |
| RsaI | GTAC | 3 cut(s) | 384, 412, 668 |
| RsaNI | GTAC | 3 cut(s) | 383, 411, 667 |
| Rsr2I | CGGWCCG | 1 cut(s) | 322 |
| RsrII | CGGWCCG | 1 cut(s) | 322 |
| SaqAI | TTAA | 3 cut(s) | 309, 723, 845 |
| SatI | GCNGC | 5 cut(s) | 26, 572, 620, 1001, 1022 |
| Sau3AI | GATC | 9 cut(s) | 118, 403, 529, 595, 628, 637, 750, 808, 870 |
| Sau96I | GGNCC | 2 cut(s) | 187, 322 |
| SchI | GAGTC | 2 cut(s) | 224, 923 |
| ScrFI | CCNGG | 6 cut(s) | 98, 107, 352, 408, 431, 969 |
| SfaNI | GCATC | 2 cut(s) | 307, 868 |
| SfcI | CTRYAG | 2 cut(s) | 26, 620 |
| SinI | GGWCC | 2 cut(s) | 187, 322 |
| SmlI | CTYRAG | 1 cut(s) | 662 |
| SmoI | CTYRAG | 1 cut(s) | 662 |
| Sse9I | AATT | 7 cut(s) | 283, 434, 495, 644, 724, 846, 988 |
| SseBI | AGGCCT | 1 cut(s) | 612 |
| SsiI | CCGC | 4 cut(s) | 125, 320, 1000, 1003 |
| SspMI | CTAG | 2 cut(s) | 374, 1071 |
| StuI | AGGCCT | 1 cut(s) | 612 |
| StyD4I | CCNGG | 6 cut(s) | 96, 105, 350, 406, 429, 967 |
| TaaI | ACNGT | 6 cut(s) | 22, 136, 326, 415, 803, 961 |
| TaiI | ACGT | 7 cut(s) | 94, 213, 229, 540, 589, 637, 785 |
| TaqI | TCGA | 4 cut(s) | 741, 788, 869, 963 |
| TasI | AATT | 7 cut(s) | 283, 434, 495, 644, 724, 846, 988 |
| TauI | GCSGC | 1 cut(s) | 1003 |
| TfiI | GAWTC | 1 cut(s) | 738 |
| Tru1I | TTAA | 3 cut(s) | 309, 723, 845 |
| Tru9I | TTAA | 3 cut(s) | 309, 723, 845 |
| TscAI | CASTG | 1 cut(s) | 869 |
| TseFI | GTSAC | 1 cut(s) | 538 |
| TseI | GCWGC | 4 cut(s) | 25, 571, 619, 1021 |
| Tsp45I | GTSAC | 1 cut(s) | 538 |
| TspGWI | ACGGA | 3 cut(s) | 76, 759, 770 |
| TspRI | CASTG | 1 cut(s) | 869 |
| Tth111I | GACNNNGTC | 1 cut(s) | 784 |
| VpaK11BI | GGWCC | 2 cut(s) | 187, 322 |
| VspI | ATTAAT | 1 cut(s) | 723 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1069 |
| XapI | RAATTY | 2 cut(s) | 283, 434 |
| XspI | CTAG | 2 cut(s) | 374, 1071 |
| ZraI | GACGTC | 1 cut(s) | 227 |