ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 346 |
| AciI | CCGC | 3 cut(s) | 344, 349, 369 |
| AclWI | GGATC | 1 cut(s) | 210 |
| AcoI | YGGCCR | 1 cut(s) | 36 |
| AcsI | RAATTY | 1 cut(s) | 149 |
| AcuI | CTGAAG | 1 cut(s) | 299 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 102, 204, 443 |
| AgsI | TTSAA | 3 cut(s) | 85, 142, 262 |
| AjnI | CCWGG | 3 cut(s) | 198, 425, 441 |
| AluBI | AGCT | 1 cut(s) | 410 |
| AluI | AGCT | 1 cut(s) | 410 |
| Alw26I | GTCTC | 1 cut(s) | 41 |
| AlwI | GGATC | 1 cut(s) | 210 |
| Ama87I | CYCGRG | 1 cut(s) | 336 |
| AoxI | GGCC | 4 cut(s) | 36, 318, 376, 384 |
| ApaI | GGGCCC | 1 cut(s) | 380 |
| ApeKI | GCWGC | 2 cut(s) | 297, 407 |
| ApoI | RAATTY | 1 cut(s) | 149 |
| AspS9I | GGNCC | 4 cut(s) | 340, 376, 377, 385 |
| AsuC2I | CCSGG | 3 cut(s) | 97, 337, 338 |
| AsuHPI | GGTGA | 5 cut(s) | 118, 232, 247, 298, 426 |
| AvaI | CYCGRG | 1 cut(s) | 336 |
| AvaII | GGWCC | 1 cut(s) | 340 |
| BaeGI | GKGCMC | 1 cut(s) | 380 |
| BalI | TGGCCA | 1 cut(s) | 38 |
| BanII | GRGCYC | 1 cut(s) | 380 |
| BbvI | GCAGC | 2 cut(s) | 284, 419 |
| BccI | CCATC | 3 cut(s) | 47, 79, 446 |
| BceAI | ACGGC | 1 cut(s) | 336 |
| BciT130I | CCWGG | 3 cut(s) | 200, 427, 443 |
| BcnI | CCSGG | 3 cut(s) | 97, 337, 338 |
| BcoDI | GTCTC | 1 cut(s) | 41 |
| BfaI | CTAG | 1 cut(s) | 454 |
| BglII | AGATCT | 1 cut(s) | 274 |
| BisI | GCNGC | 2 cut(s) | 298, 408 |
| BlsI | GCNGC | 2 cut(s) | 299, 409 |
| Bme1390I | CCNGG | 6 cut(s) | 97, 200, 337, 338, 427, 443 |
| Bme18I | GGWCC | 1 cut(s) | 340 |
| BmeT110I | CYCGRG | 1 cut(s) | 336 |
| BmgT120I | GGNCC | 4 cut(s) | 340, 376, 377, 385 |
| BmiI | GGNNCC | 4 cut(s) | 94, 341, 342, 378 |
| BmrFI | CCNGG | 6 cut(s) | 97, 200, 337, 338, 427, 443 |
| BpuMI | CCSGG | 3 cut(s) | 97, 337, 338 |
| BsaJI | CCNNGG | 5 cut(s) | 198, 302, 336, 425, 442 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 102, 204, 443 |
| Bse1I | ACTGG | 1 cut(s) | 387 |
| BseBI | CCWGG | 3 cut(s) | 200, 427, 443 |
| BseDI | CCNNGG | 5 cut(s) | 198, 302, 336, 425, 442 |
| BseGI | GGATG | 3 cut(s) | 312, 332, 438 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 102, 204, 443 |
| BseMII | CTCAG | 1 cut(s) | 425 |
| BseNI | ACTGG | 1 cut(s) | 387 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BseSI | GKGCMC | 1 cut(s) | 380 |
| BseXI | GCAGC | 2 cut(s) | 284, 419 |
| BshFI | GGCC | 4 cut(s) | 38, 320, 378, 386 |
| BsiHKCI | CYCGRG | 1 cut(s) | 336 |
| BsiSI | CCGG | 3 cut(s) | 97, 337, 404 |
| BslFI | GGGAC | 1 cut(s) | 353 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 102, 204, 443 |
| BsmAI | GTCTC | 1 cut(s) | 41 |
| BsmBI | CGTCTC | 1 cut(s) | 41 |
| BsmFI | GGGAC | 1 cut(s) | 353 |
| BsnI | GGCC | 4 cut(s) | 38, 320, 378, 386 |
| BsoBI | CYCGRG | 1 cut(s) | 336 |
| Bsp120I | GGGCCC | 1 cut(s) | 376 |
| Bsp1286I | GDGCHC | 1 cut(s) | 380 |
| Bsp143I | GATC | 2 cut(s) | 202, 274 |
| BspACI | CCGC | 3 cut(s) | 344, 349, 369 |
| BspANI | GGCC | 4 cut(s) | 38, 320, 378, 386 |
| BspCNI | CTCAG | 1 cut(s) | 424 |
| BspLI | GGNNCC | 4 cut(s) | 94, 341, 342, 378 |
| BspPI | GGATC | 1 cut(s) | 210 |
| BsrBI | CCGCTC | 1 cut(s) | 346 |
| BsrI | ACTGG | 1 cut(s) | 387 |
| BssECI | CCNNGG | 5 cut(s) | 198, 302, 336, 425, 442 |
| BssMI | GATC | 2 cut(s) | 202, 274 |
| BssT1I | CCWWGG | 1 cut(s) | 302 |
| Bst2UI | CCWGG | 3 cut(s) | 200, 427, 443 |
| Bst4CI | ACNGT | 3 cut(s) | 33, 220, 394 |
| Bst6I | CTCTTC | 3 cut(s) | 128, 275, 284 |
| BstDEI | CTNAG | 1 cut(s) | 411 |
| BstEII | GGTNACC | 1 cut(s) | 432 |
| BstF5I | GGATG | 3 cut(s) | 312, 332, 438 |
| BstKTI | GATC | 2 cut(s) | 205, 277 |
| BstMAI | GTCTC | 1 cut(s) | 41 |
| BstMBI | GATC | 2 cut(s) | 202, 274 |
| BstNI | CCWGG | 3 cut(s) | 200, 427, 443 |
| BstPI | GGTNACC | 1 cut(s) | 432 |
| BstSCI | CCNGG | 6 cut(s) | 95, 198, 335, 336, 425, 441 |
| BstSLI | GKGCMC | 1 cut(s) | 380 |
| BstV1I | GCAGC | 2 cut(s) | 284, 419 |
| BstX2I | RGATCY | 1 cut(s) | 274 |
| BstYI | RGATCY | 1 cut(s) | 274 |
| BsuRI | GGCC | 4 cut(s) | 38, 320, 378, 386 |
| BtsCI | GGATG | 3 cut(s) | 312, 332, 438 |
| BtsIMutI | CAGTG | 1 cut(s) | 380 |
| Cfr13I | GGNCC | 4 cut(s) | 340, 376, 377, 385 |
| Cfr9I | CCCGGG | 1 cut(s) | 336 |
| CviJI | RGCY | 6 cut(s) | 38, 297, 320, 378, 386, 410 |
| CviKI_1 | RGCY | 6 cut(s) | 38, 297, 320, 378, 386, 410 |
| DdeI | CTNAG | 1 cut(s) | 411 |
| DpnI | GATC | 2 cut(s) | 204, 276 |
| DpnII | GATC | 2 cut(s) | 202, 274 |
| EaeI | YGGCCR | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 3 cut(s) | 128, 275, 284 |
| EarI | CTCTTC | 3 cut(s) | 128, 275, 284 |
| EciI | GGCGGA | 1 cut(s) | 338 |
| Eco130I | CCWWGG | 1 cut(s) | 302 |
| Eco147I | AGGCCT | 1 cut(s) | 320 |
| Eco24I | GRGCYC | 1 cut(s) | 380 |
| Eco47I | GGWCC | 1 cut(s) | 340 |
| Eco57I | CTGAAG | 1 cut(s) | 299 |
| Eco88I | CYCGRG | 1 cut(s) | 336 |
| Eco91I | GGTNACC | 1 cut(s) | 432 |
| EcoO109I | RGGNCCY | 1 cut(s) | 340 |
| EcoO65I | GGTNACC | 1 cut(s) | 432 |
| EcoRII | CCWGG | 3 cut(s) | 198, 425, 441 |
| EcoT14I | CCWWGG | 1 cut(s) | 302 |
| EcoT38I | GRGCYC | 1 cut(s) | 380 |
| ErhI | CCWWGG | 1 cut(s) | 302 |
| Esp3I | CGTCTC | 1 cut(s) | 41 |
| FaiI | YATR | 2 cut(s) | 68, 110 |
| FaqI | GGGAC | 1 cut(s) | 353 |
| FauI | CCCGC | 1 cut(s) | 351 |
| Fnu4HI | GCNGC | 2 cut(s) | 298, 408 |
| FokI | GGATG | 3 cut(s) | 319, 319, 425 |
| FriOI | GRGCYC | 1 cut(s) | 380 |
| Fsp4HI | GCNGC | 2 cut(s) | 298, 408 |
| FspBI | CTAG | 1 cut(s) | 454 |
| GluI | GCNGC | 2 cut(s) | 298, 408 |
| HaeIII | GGCC | 4 cut(s) | 38, 320, 378, 386 |
| HapII | CCGG | 3 cut(s) | 97, 337, 404 |
| HinfI | GANTC | 3 cut(s) | 172, 181, 223 |
| HpaII | CCGG | 3 cut(s) | 97, 337, 404 |
| HphI | GGTGA | 5 cut(s) | 118, 232, 247, 298, 426 |
| Hpy166II | GTNNAC | 1 cut(s) | 255 |
| Hpy188I | TCNGA | 4 cut(s) | 76, 207, 279, 414 |
| Hpy188III | TCNNGA | 1 cut(s) | 262 |
| Hpy8I | GTNNAC | 1 cut(s) | 255 |
| HpyAV | CCTTC | 1 cut(s) | 79 |
| HpyCH4III | ACNGT | 3 cut(s) | 33, 220, 394 |
| HpyF3I | CTNAG | 1 cut(s) | 411 |
| KflI | GGGWCCC | 1 cut(s) | 340 |
| Kzo9I | GATC | 2 cut(s) | 202, 274 |
| LmnI | GCTCC | 1 cut(s) | 351 |
| Lsp1109I | GCAGC | 2 cut(s) | 284, 419 |
| MaeI | CTAG | 1 cut(s) | 454 |
| MaeIII | GTNAC | 3 cut(s) | 328, 353, 432 |
| MalI | GATC | 2 cut(s) | 204, 276 |
| MbiI | CCGCTC | 1 cut(s) | 346 |
| MboI | GATC | 2 cut(s) | 202, 274 |
| MboII | GAAGA | 5 cut(s) | 115, 181, 255, 292, 301 |
| MflI | RGATCY | 1 cut(s) | 274 |
| MhlI | GDGCHC | 1 cut(s) | 380 |
| MlsI | TGGCCA | 1 cut(s) | 38 |
| MluCI | AATT | 1 cut(s) | 149 |
| MluNI | TGGCCA | 1 cut(s) | 38 |
| MlyI | GAGTC | 1 cut(s) | 232 |
| MmeI | TCCRAC | 1 cut(s) | 126 |
| MnlI | CCTC | 9 cut(s) | 46, 52, 82, 93, 262, 276, 287, 398, 423 |
| Mox20I | TGGCCA | 1 cut(s) | 38 |
| MscI | TGGCCA | 1 cut(s) | 38 |
| Msp20I | TGGCCA | 1 cut(s) | 38 |
| MspI | CCGG | 3 cut(s) | 97, 337, 404 |
| MspR9I | CCNGG | 6 cut(s) | 97, 200, 337, 338, 427, 443 |
| MvaI | CCWGG | 3 cut(s) | 200, 427, 443 |
| NciI | CCSGG | 3 cut(s) | 97, 337, 338 |
| NdeII | GATC | 2 cut(s) | 202, 274 |
| NlaIV | GGNNCC | 4 cut(s) | 94, 341, 342, 378 |
| NmuCI | GTSAC | 1 cut(s) | 432 |
| PceI | AGGCCT | 1 cut(s) | 320 |
| PfeI | GAWTC | 2 cut(s) | 172, 181 |
| PfoI | TCCNGGA | 1 cut(s) | 95 |
| PkrI | GCNGC | 2 cut(s) | 299, 409 |
| PleI | GAGTC | 1 cut(s) | 231 |
| PpsI | GAGTC | 1 cut(s) | 231 |
| PpuMI | RGGWCCY | 1 cut(s) | 340 |
| Psp5II | RGGWCCY | 1 cut(s) | 340 |
| Psp6I | CCWGG | 3 cut(s) | 198, 425, 441 |
| PspEI | GGTNACC | 1 cut(s) | 432 |
| PspGI | CCWGG | 3 cut(s) | 198, 425, 441 |
| PspN4I | GGNNCC | 4 cut(s) | 94, 341, 342, 378 |
| PspOMI | GGGCCC | 1 cut(s) | 376 |
| PspPI | GGNCC | 4 cut(s) | 340, 376, 377, 385 |
| PspPPI | RGGWCCY | 1 cut(s) | 340 |
| PsuI | RGATCY | 1 cut(s) | 274 |
| SatI | GCNGC | 2 cut(s) | 298, 408 |
| Sau3AI | GATC | 2 cut(s) | 202, 274 |
| Sau96I | GGNCC | 4 cut(s) | 340, 376, 377, 385 |
| SchI | GAGTC | 1 cut(s) | 232 |
| ScrFI | CCNGG | 6 cut(s) | 97, 200, 337, 338, 427, 443 |
| SduI | GDGCHC | 1 cut(s) | 380 |
| SetI | ASST | 6 cut(s) | 12, 57, 63, 104, 412, 434 |
| SinI | GGWCC | 1 cut(s) | 340 |
| SmaI | CCCGGG | 1 cut(s) | 338 |
| Sse9I | AATT | 1 cut(s) | 149 |
| SseBI | AGGCCT | 1 cut(s) | 320 |
| SsiI | CCGC | 3 cut(s) | 344, 349, 369 |
| SspMI | CTAG | 1 cut(s) | 454 |
| StuI | AGGCCT | 1 cut(s) | 320 |
| StyD4I | CCNGG | 6 cut(s) | 95, 198, 335, 336, 425, 441 |
| StyI | CCWWGG | 1 cut(s) | 302 |
| TaaI | ACNGT | 3 cut(s) | 33, 220, 394 |
| TaqI | TCGA | 1 cut(s) | 226 |
| TasI | AATT | 1 cut(s) | 149 |
| TfiI | GAWTC | 2 cut(s) | 172, 181 |
| TscAI | CASTG | 1 cut(s) | 387 |
| TseFI | GTSAC | 1 cut(s) | 432 |
| TseI | GCWGC | 2 cut(s) | 297, 407 |
| Tsp45I | GTSAC | 1 cut(s) | 432 |
| TspDTI | ATGAA | 1 cut(s) | 182 |
| TspGWI | ACGGA | 1 cut(s) | 65 |
| TspMI | CCCGGG | 1 cut(s) | 336 |
| TspRI | CASTG | 1 cut(s) | 387 |
| VpaK11BI | GGWCC | 1 cut(s) | 340 |
| XapI | RAATTY | 1 cut(s) | 149 |
| XmaI | CCCGGG | 1 cut(s) | 336 |
| XspI | CTAG | 1 cut(s) | 454 |