ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 31, 103 |
| AclWI | GGATC | 6 cut(s) | 74, 87, 467, 480, 561, 647 |
| AcoI | YGGCCR | 1 cut(s) | 661 |
| AcsI | RAATTY | 4 cut(s) | 277, 503, 1071, 1502 |
| AcuI | CTGAAG | 1 cut(s) | 700 |
| AfaI | GTAC | 2 cut(s) | 496, 981 |
| AfeI | AGCGCT | 1 cut(s) | 90 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 49, 694, 740, 1295, 1429 |
| AgsI | TTSAA | 5 cut(s) | 154, 230, 430, 876, 1047 |
| AjnI | CCWGG | 2 cut(s) | 194, 879 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 469, 501, 841, 873 |
| AluBI | AGCT | 2 cut(s) | 384, 1292 |
| AluI | AGCT | 2 cut(s) | 384, 1292 |
| Alw21I | GWGCWC | 1 cut(s) | 1474 |
| Alw26I | GTCTC | 7 cut(s) | 265, 320, 539, 830, 899, 1297, 1341 |
| AlwI | GGATC | 6 cut(s) | 74, 87, 467, 480, 561, 647 |
| Ama87I | CYCGRG | 1 cut(s) | 376 |
| Aor51HI | AGCGCT | 1 cut(s) | 90 |
| AoxI | GGCC | 5 cut(s) | 238, 661, 685, 1424, 1496 |
| ApeKI | GCWGC | 2 cut(s) | 86, 265 |
| ApoI | RAATTY | 4 cut(s) | 277, 503, 1071, 1502 |
| AspLEI | GCGC | 3 cut(s) | 91, 548, 1174 |
| AspS9I | GGNCC | 2 cut(s) | 711, 1496 |
| AsuHPI | GGTGA | 7 cut(s) | 401, 511, 757, 911, 962, 1310, 1385 |
| AsuII | TTCGAA | 1 cut(s) | 460 |
| AvaI | CYCGRG | 1 cut(s) | 376 |
| AvaII | GGWCC | 1 cut(s) | 711 |
| BalI | TGGCCA | 1 cut(s) | 663 |
| BamHI | GGATCC | 2 cut(s) | 79, 472 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 795, 827 |
| BbsI | GAAGAC | 5 cut(s) | 132, 136, 437, 629, 1423 |
| Bbv12I | GWGCWC | 1 cut(s) | 1474 |
| BbvI | GCAGC | 2 cut(s) | 98, 252 |
| BccI | CCATC | 6 cut(s) | 47, 230, 386, 767, 1237, 1244 |
| BceAI | ACGGC | 1 cut(s) | 1297 |
| BciT130I | CCWGG | 2 cut(s) | 196, 881 |
| BclI | TGATCA | 1 cut(s) | 166 |
| BcoDI | GTCTC | 7 cut(s) | 265, 320, 539, 830, 899, 1297, 1341 |
| BfaI | CTAG | 3 cut(s) | 269, 579, 792 |
| BfmI | CTRYAG | 2 cut(s) | 84, 1293 |
| BfoI | RGCGCY | 2 cut(s) | 92, 1175 |
| BisI | GCNGC | 2 cut(s) | 87, 266 |
| BlsI | GCNGC | 2 cut(s) | 88, 267 |
| Bme1390I | CCNGG | 2 cut(s) | 196, 881 |
| Bme18I | GGWCC | 1 cut(s) | 711 |
| BmeT110I | CYCGRG | 1 cut(s) | 376 |
| BmgT120I | GGNCC | 2 cut(s) | 711, 1496 |
| BmiI | GGNNCC | 3 cut(s) | 81, 474, 1497 |
| BmrFI | CCNGG | 2 cut(s) | 196, 881 |
| BmsI | GCATC | 1 cut(s) | 907 |
| BpiI | GAAGAC | 5 cut(s) | 132, 136, 437, 629, 1423 |
| Bpu14I | TTCGAA | 1 cut(s) | 460 |
| BsaAI | YACGTR | 1 cut(s) | 815 |
| BsaI | GGTCTC | 1 cut(s) | 265 |
| BsaJI | CCNNGG | 5 cut(s) | 194, 476, 658, 879, 880 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 373, 403 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 49, 694, 740, 1295, 1429 |
| Bse1I | ACTGG | 5 cut(s) | 63, 301, 474, 983, 1276 |
| BseBI | CCWGG | 2 cut(s) | 196, 881 |
| BseDI | CCNNGG | 5 cut(s) | 194, 476, 658, 879, 880 |
| BseGI | GGATG | 5 cut(s) | 39, 487, 868, 1255, 1402 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 49, 694, 740, 1295, 1429 |
| BseMII | CTCAG | 3 cut(s) | 144, 437, 938 |
| BseNI | ACTGG | 5 cut(s) | 63, 301, 474, 983, 1276 |
| BseRI | GAGGAG | 3 cut(s) | 65, 617, 1176 |
| BseXI | GCAGC | 2 cut(s) | 98, 252 |
| BshFI | GGCC | 5 cut(s) | 240, 663, 687, 1426, 1498 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1474 |
| BsiHKCI | CYCGRG | 1 cut(s) | 376 |
| BsiSI | CCGG | 2 cut(s) | 1413, 1423 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 49, 694, 740, 1295, 1429 |
| BsmAI | GTCTC | 7 cut(s) | 265, 320, 539, 830, 899, 1297, 1341 |
| BsmI | GAATGC | 1 cut(s) | 468 |
| BsnI | GGCC | 5 cut(s) | 240, 663, 687, 1426, 1498 |
| Bso31I | GGTCTC | 1 cut(s) | 265 |
| BsoBI | CYCGRG | 1 cut(s) | 376 |
| Bsp119I | TTCGAA | 1 cut(s) | 460 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1474 |
| Bsp143I | GATC | 6 cut(s) | 79, 166, 472, 553, 652, 967 |
| Bsp19I | CCATGG | 1 cut(s) | 658 |
| BspACI | CCGC | 2 cut(s) | 31, 103 |
| BspANI | GGCC | 5 cut(s) | 240, 663, 687, 1426, 1498 |
| BspCNI | CTCAG | 3 cut(s) | 143, 438, 937 |
| BspLI | GGNNCC | 3 cut(s) | 81, 474, 1497 |
| BspMAI | CTGCAG | 1 cut(s) | 88 |
| BspPI | GGATC | 6 cut(s) | 74, 87, 467, 480, 561, 647 |
| BspT104I | TTCGAA | 1 cut(s) | 460 |
| BspTNI | GGTCTC | 1 cut(s) | 265 |
| BsrI | ACTGG | 5 cut(s) | 63, 301, 474, 983, 1276 |
| BssECI | CCNNGG | 5 cut(s) | 194, 476, 658, 879, 880 |
| BssMI | GATC | 6 cut(s) | 79, 166, 472, 553, 652, 967 |
| BssT1I | CCWWGG | 2 cut(s) | 476, 658 |
| Bst2UI | CCWGG | 2 cut(s) | 196, 881 |
| Bst4CI | ACNGT | 3 cut(s) | 73, 216, 499 |
| Bst6I | CTCTTC | 2 cut(s) | 897, 1395 |
| BstBAI | YACGTR | 1 cut(s) | 815 |
| BstBI | TTCGAA | 1 cut(s) | 460 |
| BstDEI | CTNAG | 4 cut(s) | 130, 446, 924, 1509 |
| BstDSI | CCRYGG | 1 cut(s) | 658 |
| BstF5I | GGATG | 5 cut(s) | 39, 487, 868, 1255, 1402 |
| BstH2I | RGCGCY | 2 cut(s) | 92, 1175 |
| BstHHI | GCGC | 3 cut(s) | 91, 548, 1174 |
| BstKTI | GATC | 6 cut(s) | 82, 169, 475, 556, 655, 970 |
| BstMAI | GTCTC | 7 cut(s) | 265, 320, 539, 830, 899, 1297, 1341 |
| BstMBI | GATC | 6 cut(s) | 79, 166, 472, 553, 652, 967 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 95, 109, 218, 271 |
| BstNI | CCWGG | 2 cut(s) | 196, 881 |
| BstSCI | CCNGG | 2 cut(s) | 194, 879 |
| BstSFI | CTRYAG | 2 cut(s) | 84, 1293 |
| BstV1I | GCAGC | 2 cut(s) | 98, 252 |
| BstV2I | GAAGAC | 5 cut(s) | 132, 136, 437, 629, 1423 |
| BstX2I | RGATCY | 2 cut(s) | 79, 472 |
| BstYI | RGATCY | 2 cut(s) | 79, 472 |
| BsuRI | GGCC | 5 cut(s) | 240, 663, 687, 1426, 1498 |
| BtgI | CCRYGG | 1 cut(s) | 658 |
| BtsCI | GGATG | 5 cut(s) | 39, 487, 868, 1255, 1402 |
| BtsI | GCAGTG | 2 cut(s) | 1077, 1114 |
| BtsIMutI | CAGTG | 4 cut(s) | 212, 990, 1077, 1114 |
| CfoI | GCGC | 3 cut(s) | 91, 548, 1174 |
| Cfr13I | GGNCC | 2 cut(s) | 711, 1496 |
| Csp6I | GTAC | 2 cut(s) | 495, 980 |
| CviAII | CATG | 5 cut(s) | 27, 44, 557, 659, 1340 |
| CviQI | GTAC | 2 cut(s) | 495, 980 |
| DdeI | CTNAG | 4 cut(s) | 130, 446, 924, 1509 |
| DpnI | GATC | 6 cut(s) | 81, 168, 474, 555, 654, 969 |
| DpnII | GATC | 6 cut(s) | 79, 166, 472, 553, 652, 967 |
| DraI | TTTAAA | 1 cut(s) | 183 |
| EaeI | YGGCCR | 1 cut(s) | 661 |
| Eam1104I | CTCTTC | 2 cut(s) | 897, 1395 |
| EarI | CTCTTC | 2 cut(s) | 897, 1395 |
| Eco130I | CCWWGG | 2 cut(s) | 476, 658 |
| Eco31I | GGTCTC | 1 cut(s) | 265 |
| Eco47I | GGWCC | 1 cut(s) | 711 |
| Eco47III | AGCGCT | 1 cut(s) | 90 |
| Eco57I | CTGAAG | 1 cut(s) | 700 |
| Eco88I | CYCGRG | 1 cut(s) | 376 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1496 |
| EcoRII | CCWGG | 2 cut(s) | 194, 879 |
| EcoT14I | CCWWGG | 2 cut(s) | 476, 658 |
| ErhI | CCWWGG | 2 cut(s) | 476, 658 |
| FaeI | CATG | 5 cut(s) | 30, 47, 560, 662, 1343 |
| FatI | CATG | 5 cut(s) | 26, 43, 556, 658, 1339 |
| FauNDI | CATATG | 1 cut(s) | 1178 |
| FbaI | TGATCA | 1 cut(s) | 166 |
| Fnu4HI | GCNGC | 2 cut(s) | 87, 266 |
| FokI | GGATG | 5 cut(s) | 26, 494, 875, 1262, 1409 |
| Fsp4HI | GCNGC | 2 cut(s) | 87, 266 |
| FspBI | CTAG | 3 cut(s) | 269, 579, 792 |
| GlaI | GCGC | 3 cut(s) | 90, 547, 1173 |
| GluI | GCNGC | 2 cut(s) | 87, 266 |
| HaeII | RGCGCY | 2 cut(s) | 92, 1175 |
| HaeIII | GGCC | 5 cut(s) | 240, 663, 687, 1426, 1498 |
| HapII | CCGG | 2 cut(s) | 1413, 1423 |
| HhaI | GCGC | 3 cut(s) | 91, 548, 1174 |
| Hin1II | CATG | 5 cut(s) | 30, 47, 560, 662, 1343 |
| Hin6I | GCGC | 3 cut(s) | 89, 546, 1172 |
| HinP1I | GCGC | 3 cut(s) | 89, 546, 1172 |
| HincII | GTYRAC | 1 cut(s) | 1201 |
| HindII | GTYRAC | 1 cut(s) | 1201 |
| HinfI | GANTC | 5 cut(s) | 128, 374, 625, 1211, 1419 |
| HpaII | CCGG | 2 cut(s) | 1413, 1423 |
| HphI | GGTGA | 7 cut(s) | 401, 511, 757, 911, 962, 1310, 1385 |
| Hpy166II | GTNNAC | 1 cut(s) | 1201 |
| Hpy188I | TCNGA | 9 cut(s) | 160, 235, 336, 447, 719, 735, 927, 963, 1354 |
| Hpy188III | TCNNGA | 2 cut(s) | 251, 725 |
| Hpy8I | GTNNAC | 1 cut(s) | 1201 |
| Hpy99I | CGWCG | 1 cut(s) | 257 |
| HpyAV | CCTTC | 7 cut(s) | 581, 724, 797, 1002, 1038, 1150, 1181 |
| HpyCH4III | ACNGT | 3 cut(s) | 73, 216, 499 |
| HpyCH4IV | ACGT | 1 cut(s) | 814 |
| HpyCH4V | TGCA | 6 cut(s) | 26, 86, 212, 274, 466, 670 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 95, 109, 218, 271 |
| HpyF3I | CTNAG | 4 cut(s) | 130, 446, 924, 1509 |
| HpySE526I | ACGT | 1 cut(s) | 814 |
| Hsp92II | CATG | 5 cut(s) | 30, 47, 560, 662, 1343 |
| HspAI | GCGC | 3 cut(s) | 89, 546, 1172 |
| Ksp22I | TGATCA | 1 cut(s) | 166 |
| Kzo9I | GATC | 6 cut(s) | 79, 166, 472, 553, 652, 967 |
| LmnI | GCTCC | 2 cut(s) | 381, 1036 |
| Lsp1109I | GCAGC | 2 cut(s) | 98, 252 |
| LweI | GCATC | 1 cut(s) | 907 |
| MaeI | CTAG | 3 cut(s) | 269, 579, 792 |
| MaeII | ACGT | 1 cut(s) | 814 |
| MaeIII | GTNAC | 2 cut(s) | 1267, 1373 |
| MalI | GATC | 6 cut(s) | 81, 168, 474, 555, 654, 969 |
| MboI | GATC | 6 cut(s) | 79, 166, 472, 553, 652, 967 |
| MfeI | CAATTG | 1 cut(s) | 568 |
| MflI | RGATCY | 2 cut(s) | 79, 472 |
| MhlI | GDGCHC | 1 cut(s) | 1474 |
| MlsI | TGGCCA | 1 cut(s) | 663 |
| MluCI | AATT | 8 cut(s) | 154, 277, 503, 568, 819, 1071, 1482, 1502 |
| MluNI | TGGCCA | 1 cut(s) | 663 |
| MlyI | GAGTC | 4 cut(s) | 122, 368, 619, 1413 |
| MmeI | TCCRAC | 2 cut(s) | 314, 599 |
| Mox20I | TGGCCA | 1 cut(s) | 663 |
| MscI | TGGCCA | 1 cut(s) | 663 |
| MseI | TTAA | 6 cut(s) | 182, 1002, 1262, 1325, 1380, 1476 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1241 |
| Msp20I | TGGCCA | 1 cut(s) | 663 |
| MspI | CCGG | 2 cut(s) | 1413, 1423 |
| MspR9I | CCNGG | 2 cut(s) | 196, 881 |
| MunI | CAATTG | 1 cut(s) | 568 |
| Mva1269I | GAATGC | 1 cut(s) | 468 |
| MvaI | CCWGG | 2 cut(s) | 196, 881 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 95, 109, 218, 271 |
| NcoI | CCATGG | 1 cut(s) | 658 |
| NdeI | CATATG | 1 cut(s) | 1178 |
| NdeII | GATC | 6 cut(s) | 79, 166, 472, 553, 652, 967 |
| NlaIII | CATG | 5 cut(s) | 30, 47, 560, 662, 1343 |
| NlaIV | GGNNCC | 3 cut(s) | 81, 474, 1497 |
| NmuCI | GTSAC | 2 cut(s) | 1267, 1373 |
| NspV | TTCGAA | 1 cut(s) | 460 |
| PasI | CCCWGGG | 1 cut(s) | 880 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 249 |
| PctI | GAATGC | 1 cut(s) | 468 |
| PfeI | GAWTC | 1 cut(s) | 1211 |
| PflFI | GACNNNGTC | 1 cut(s) | 257 |
| PkrI | GCNGC | 2 cut(s) | 88, 267 |
| PleI | GAGTC | 4 cut(s) | 122, 368, 619, 1413 |
| PpsI | GAGTC | 4 cut(s) | 122, 368, 619, 1413 |
| Ppu21I | YACGTR | 1 cut(s) | 815 |
| Psp6I | CCWGG | 2 cut(s) | 194, 879 |
| PspGI | CCWGG | 2 cut(s) | 194, 879 |
| PspN4I | GGNNCC | 3 cut(s) | 81, 474, 1497 |
| PspPI | GGNCC | 2 cut(s) | 711, 1496 |
| PstI | CTGCAG | 1 cut(s) | 88 |
| PsuI | RGATCY | 2 cut(s) | 79, 472 |
| PsyI | GACNNNGTC | 1 cut(s) | 257 |
| RsaI | GTAC | 2 cut(s) | 496, 981 |
| RsaNI | GTAC | 2 cut(s) | 495, 980 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1241 |
| SaqAI | TTAA | 6 cut(s) | 182, 1002, 1262, 1325, 1380, 1476 |
| SatI | GCNGC | 2 cut(s) | 87, 266 |
| Sau3AI | GATC | 6 cut(s) | 79, 166, 472, 553, 652, 967 |
| Sau96I | GGNCC | 2 cut(s) | 711, 1496 |
| SchI | GAGTC | 4 cut(s) | 122, 368, 619, 1413 |
| ScrFI | CCNGG | 2 cut(s) | 196, 881 |
| SduI | GDGCHC | 1 cut(s) | 1474 |
| SfaNI | GCATC | 1 cut(s) | 907 |
| SfcI | CTRYAG | 2 cut(s) | 84, 1293 |
| SfuI | TTCGAA | 1 cut(s) | 460 |
| SinI | GGWCC | 1 cut(s) | 711 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1241 |
| Sse9I | AATT | 8 cut(s) | 154, 277, 503, 568, 819, 1071, 1482, 1502 |
| SsiI | CCGC | 2 cut(s) | 31, 103 |
| SspI | AATATT | 1 cut(s) | 1389 |
| SspMI | CTAG | 3 cut(s) | 269, 579, 792 |
| StyD4I | CCNGG | 2 cut(s) | 194, 879 |
| StyI | CCWWGG | 2 cut(s) | 476, 658 |
| TaaI | ACNGT | 3 cut(s) | 73, 216, 499 |
| TaiI | ACGT | 1 cut(s) | 817 |
| TaqI | TCGA | 2 cut(s) | 460, 676 |
| TasI | AATT | 8 cut(s) | 154, 277, 503, 568, 819, 1071, 1482, 1502 |
| TfiI | GAWTC | 1 cut(s) | 1211 |
| Tru1I | TTAA | 6 cut(s) | 182, 1002, 1262, 1325, 1380, 1476 |
| Tru9I | TTAA | 6 cut(s) | 182, 1002, 1262, 1325, 1380, 1476 |
| TscAI | CASTG | 4 cut(s) | 219, 990, 1084, 1114 |
| TseFI | GTSAC | 2 cut(s) | 1267, 1373 |
| TseI | GCWGC | 2 cut(s) | 86, 265 |
| Tsp45I | GTSAC | 2 cut(s) | 1267, 1373 |
| TspDTI | ATGAA | 5 cut(s) | 528, 879, 945, 1398, 1413 |
| TspRI | CASTG | 4 cut(s) | 219, 990, 1084, 1114 |
| Tth111I | GACNNNGTC | 1 cut(s) | 257 |
| VpaK11BI | GGWCC | 1 cut(s) | 711 |
| XapI | RAATTY | 4 cut(s) | 277, 503, 1071, 1502 |
| XspI | CTAG | 3 cut(s) | 269, 579, 792 |