ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 201 - 249 | 8.3e-09 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 197 |
| AciI | CCGC | 1 cut(s) | 617 |
| AclWI | GGATC | 1 cut(s) | 771 |
| AcsI | RAATTY | 1 cut(s) | 167 |
| AcyI | GRCGYC | 1 cut(s) | 194 |
| AfaI | GTAC | 1 cut(s) | 510 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 97, 490 |
| AgeI | ACCGGT | 1 cut(s) | 625 |
| AgsI | TTSAA | 2 cut(s) | 586, 709 |
| AjnI | CCWGG | 2 cut(s) | 84, 646 |
| AleI | CACNNNNGTG | 1 cut(s) | 244 |
| AluBI | AGCT | 1 cut(s) | 691 |
| AluI | AGCT | 1 cut(s) | 691 |
| AlwI | GGATC | 1 cut(s) | 771 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 355 |
| AoxI | GGCC | 1 cut(s) | 117 |
| ApoI | RAATTY | 1 cut(s) | 167 |
| AsiGI | ACCGGT | 1 cut(s) | 625 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 452 |
| AspA2I | CCTAGG | 1 cut(s) | 161 |
| AspLEI | GCGC | 1 cut(s) | 103 |
| AspS9I | GGNCC | 2 cut(s) | 88, 118 |
| AsuC2I | CCSGG | 1 cut(s) | 505 |
| AsuHPI | GGTGA | 1 cut(s) | 607 |
| AvaII | GGWCC | 1 cut(s) | 88 |
| AvrII | CCTAGG | 1 cut(s) | 161 |
| BauI | CACGAG | 1 cut(s) | 276 |
| BccI | CCATC | 2 cut(s) | 217, 404 |
| BciT130I | CCWGG | 2 cut(s) | 86, 648 |
| BcnI | CCSGG | 1 cut(s) | 505 |
| BfaI | CTAG | 2 cut(s) | 162, 572 |
| BfoI | RGCGCY | 1 cut(s) | 104 |
| BglII | AGATCT | 1 cut(s) | 143 |
| BlnI | CCTAGG | 1 cut(s) | 161 |
| Bme1390I | CCNGG | 3 cut(s) | 86, 505, 648 |
| Bme18I | GGWCC | 1 cut(s) | 88 |
| BmgT120I | GGNCC | 2 cut(s) | 88, 118 |
| BmrFI | CCNGG | 3 cut(s) | 86, 505, 648 |
| BmsI | GCATC | 4 cut(s) | 573, 641, 671, 777 |
| BpmI | CTGGAG | 1 cut(s) | 158 |
| BpuMI | CCSGG | 1 cut(s) | 505 |
| Bsa29I | ATCGAT | 1 cut(s) | 766 |
| BsaAI | YACGTR | 1 cut(s) | 512 |
| BsaBI | GATNNNNATC | 1 cut(s) | 345 |
| BsaHI | GRCGYC | 1 cut(s) | 194 |
| BsaJI | CCNNGG | 5 cut(s) | 161, 251, 368, 504, 647 |
| BsaWI | WCCGGW | 1 cut(s) | 625 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 97, 490 |
| Bse118I | RCCGGY | 1 cut(s) | 625 |
| Bse1I | ACTGG | 2 cut(s) | 102, 739 |
| Bse8I | GATNNNNATC | 1 cut(s) | 345 |
| BseBI | CCWGG | 2 cut(s) | 86, 648 |
| BseCI | ATCGAT | 1 cut(s) | 766 |
| BseDI | CCNNGG | 5 cut(s) | 161, 251, 368, 504, 647 |
| BseGI | GGATG | 2 cut(s) | 368, 559 |
| BseJI | GATNNNNATC | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 97, 490 |
| BseNI | ACTGG | 2 cut(s) | 102, 739 |
| BseRI | GAGGAG | 3 cut(s) | 86, 125, 128 |
| Bsh1285I | CGRYCG | 1 cut(s) | 626 |
| BshFI | GGCC | 1 cut(s) | 119 |
| BshTI | ACCGGT | 1 cut(s) | 625 |
| BshVI | ATCGAT | 1 cut(s) | 766 |
| BsiEI | CGRYCG | 1 cut(s) | 626 |
| BsiSI | CCGG | 3 cut(s) | 91, 504, 626 |
| BslFI | GGGAC | 1 cut(s) | 461 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 97, 490 |
| BsmFI | GGGAC | 1 cut(s) | 461 |
| BsnI | GGCC | 1 cut(s) | 119 |
| Bsp143I | GATC | 5 cut(s) | 126, 143, 307, 396, 763 |
| BspACI | CCGC | 1 cut(s) | 617 |
| BspANI | GGCC | 1 cut(s) | 119 |
| BspDI | ATCGAT | 1 cut(s) | 766 |
| BspPI | GGATC | 1 cut(s) | 771 |
| BsrFI | RCCGGY | 1 cut(s) | 625 |
| BsrI | ACTGG | 2 cut(s) | 102, 739 |
| BssAI | RCCGGY | 1 cut(s) | 625 |
| BssECI | CCNNGG | 5 cut(s) | 161, 251, 368, 504, 647 |
| BssMI | GATC | 5 cut(s) | 126, 143, 307, 396, 763 |
| BssNI | GRCGYC | 1 cut(s) | 194 |
| BssSI | CACGAG | 1 cut(s) | 276 |
| BssT1I | CCWWGG | 1 cut(s) | 161 |
| Bst2BI | CACGAG | 1 cut(s) | 276 |
| Bst2UI | CCWGG | 2 cut(s) | 86, 648 |
| Bst4CI | ACNGT | 3 cut(s) | 243, 286, 526 |
| BstACI | GRCGYC | 1 cut(s) | 194 |
| BstBAI | YACGTR | 1 cut(s) | 512 |
| BstDSI | CCRYGG | 1 cut(s) | 368 |
| BstEII | GGTNACC | 1 cut(s) | 80 |
| BstF5I | GGATG | 2 cut(s) | 368, 559 |
| BstH2I | RGCGCY | 1 cut(s) | 104 |
| BstHHI | GCGC | 1 cut(s) | 103 |
| BstKTI | GATC | 5 cut(s) | 129, 146, 310, 399, 766 |
| BstMBI | GATC | 5 cut(s) | 126, 143, 307, 396, 763 |
| BstMCI | CGRYCG | 1 cut(s) | 626 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 100, 392, 724 |
| BstNI | CCWGG | 2 cut(s) | 86, 648 |
| BstPI | GGTNACC | 1 cut(s) | 80 |
| BstSCI | CCNGG | 3 cut(s) | 84, 503, 646 |
| BstSNI | TACGTA | 1 cut(s) | 512 |
| BstX2I | RGATCY | 1 cut(s) | 143 |
| BstYI | RGATCY | 1 cut(s) | 143 |
| Bsu15I | ATCGAT | 1 cut(s) | 766 |
| BsuRI | GGCC | 1 cut(s) | 119 |
| BsuTUI | ATCGAT | 1 cut(s) | 766 |
| BtgI | CCRYGG | 1 cut(s) | 368 |
| BtsCI | GGATG | 2 cut(s) | 368, 559 |
| BtsIMutI | CAGTG | 2 cut(s) | 239, 746 |
| CaiI | CAGNNNCTG | 1 cut(s) | 355 |
| CfoI | GCGC | 1 cut(s) | 103 |
| Cfr10I | RCCGGY | 1 cut(s) | 625 |
| Cfr13I | GGNCC | 2 cut(s) | 88, 118 |
| ClaI | ATCGAT | 1 cut(s) | 766 |
| CsiI | ACCWGGT | 1 cut(s) | 84 |
| Csp6I | GTAC | 1 cut(s) | 509 |
| CspAI | ACCGGT | 1 cut(s) | 625 |
| CviAII | CATG | 7 cut(s) | 106, 122, 332, 468, 560, 666, 728 |
| CviJI | RGCY | 7 cut(s) | 119, 160, 274, 386, 643, 691, 718 |
| CviKI_1 | RGCY | 7 cut(s) | 119, 160, 274, 386, 643, 691, 718 |
| CviQI | GTAC | 1 cut(s) | 509 |
| DpnI | GATC | 5 cut(s) | 128, 145, 309, 398, 765 |
| DpnII | GATC | 5 cut(s) | 126, 143, 307, 396, 763 |
| Eco105I | TACGTA | 1 cut(s) | 512 |
| Eco130I | CCWWGG | 1 cut(s) | 161 |
| Eco47I | GGWCC | 1 cut(s) | 88 |
| Eco91I | GGTNACC | 1 cut(s) | 80 |
| EcoO65I | GGTNACC | 1 cut(s) | 80 |
| EcoRII | CCWGG | 2 cut(s) | 84, 646 |
| EcoT14I | CCWWGG | 1 cut(s) | 161 |
| ErhI | CCWWGG | 1 cut(s) | 161 |
| FaeI | CATG | 7 cut(s) | 109, 125, 335, 471, 563, 669, 731 |
| FaqI | GGGAC | 1 cut(s) | 461 |
| FatI | CATG | 7 cut(s) | 105, 121, 331, 467, 559, 665, 727 |
| FokI | GGATG | 2 cut(s) | 375, 566 |
| FspBI | CTAG | 2 cut(s) | 162, 572 |
| GlaI | GCGC | 1 cut(s) | 102 |
| GsuI | CTGGAG | 1 cut(s) | 158 |
| HaeII | RGCGCY | 1 cut(s) | 104 |
| HaeIII | GGCC | 1 cut(s) | 119 |
| HapII | CCGG | 3 cut(s) | 91, 504, 626 |
| HhaI | GCGC | 1 cut(s) | 103 |
| Hin1I | GRCGYC | 1 cut(s) | 194 |
| Hin1II | CATG | 7 cut(s) | 109, 125, 335, 471, 563, 669, 731 |
| Hin6I | GCGC | 1 cut(s) | 101 |
| HinP1I | GCGC | 1 cut(s) | 101 |
| HindIII | AAGCTT | 1 cut(s) | 689 |
| HinfI | GANTC | 2 cut(s) | 346, 731 |
| HpaII | CCGG | 3 cut(s) | 91, 504, 626 |
| HphI | GGTGA | 1 cut(s) | 607 |
| Hpy166II | GTNNAC | 2 cut(s) | 41, 746 |
| Hpy188I | TCNGA | 4 cut(s) | 174, 252, 696, 794 |
| Hpy188III | TCNNGA | 2 cut(s) | 400, 457 |
| Hpy8I | GTNNAC | 2 cut(s) | 41, 746 |
| Hpy99I | CGWCG | 1 cut(s) | 406 |
| HpyAV | CCTTC | 4 cut(s) | 229, 408, 544, 580 |
| HpyCH4III | ACNGT | 3 cut(s) | 243, 286, 526 |
| HpyCH4IV | ACGT | 2 cut(s) | 194, 511 |
| HpyCH4V | TGCA | 2 cut(s) | 751, 780 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 100, 392, 724 |
| HpySE526I | ACGT | 2 cut(s) | 194, 511 |
| Hsp92I | GRCGYC | 1 cut(s) | 194 |
| Hsp92II | CATG | 7 cut(s) | 109, 125, 335, 471, 563, 669, 731 |
| HspAI | GCGC | 1 cut(s) | 101 |
| Kzo9I | GATC | 5 cut(s) | 126, 143, 307, 396, 763 |
| LweI | GCATC | 4 cut(s) | 573, 641, 671, 777 |
| MabI | ACCWGGT | 1 cut(s) | 84 |
| MaeI | CTAG | 2 cut(s) | 162, 572 |
| MaeII | ACGT | 2 cut(s) | 194, 511 |
| MaeIII | GTNAC | 3 cut(s) | 80, 280, 289 |
| MalI | GATC | 5 cut(s) | 128, 145, 309, 398, 765 |
| MboI | GATC | 5 cut(s) | 126, 143, 307, 396, 763 |
| MboII | GAAGA | 1 cut(s) | 431 |
| MfeI | CAATTG | 2 cut(s) | 442, 709 |
| MflI | RGATCY | 1 cut(s) | 143 |
| MluCI | AATT | 4 cut(s) | 167, 442, 449, 709 |
| MmeI | TCCRAC | 3 cut(s) | 14, 719, 759 |
| MroXI | GAANNNNTTC | 1 cut(s) | 452 |
| MseI | TTAA | 1 cut(s) | 428 |
| MslI | CAYNNNNRTG | 2 cut(s) | 244, 336 |
| MspI | CCGG | 3 cut(s) | 91, 504, 626 |
| MspR9I | CCNGG | 3 cut(s) | 86, 505, 648 |
| MunI | CAATTG | 2 cut(s) | 442, 709 |
| MvaI | CCWGG | 2 cut(s) | 86, 648 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 100, 392, 724 |
| NciI | CCSGG | 1 cut(s) | 505 |
| NdeII | GATC | 5 cut(s) | 126, 143, 307, 396, 763 |
| NlaIII | CATG | 7 cut(s) | 109, 125, 335, 471, 563, 669, 731 |
| NmuCI | GTSAC | 2 cut(s) | 280, 289 |
| OliI | CACNNNNGTG | 1 cut(s) | 244 |
| PdmI | GAANNNNTTC | 1 cut(s) | 452 |
| PfeI | GAWTC | 2 cut(s) | 346, 731 |
| PinAI | ACCGGT | 1 cut(s) | 625 |
| Ppu21I | YACGTR | 1 cut(s) | 512 |
| Psp6I | CCWGG | 2 cut(s) | 84, 646 |
| PspEI | GGTNACC | 1 cut(s) | 80 |
| PspGI | CCWGG | 2 cut(s) | 84, 646 |
| PspPI | GGNCC | 2 cut(s) | 88, 118 |
| PstNI | CAGNNNCTG | 1 cut(s) | 355 |
| PsuI | RGATCY | 1 cut(s) | 143 |
| RsaI | GTAC | 1 cut(s) | 510 |
| RsaNI | GTAC | 1 cut(s) | 509 |
| RseI | CAYNNNNRTG | 2 cut(s) | 244, 336 |
| SaqAI | TTAA | 1 cut(s) | 428 |
| Sau3AI | GATC | 5 cut(s) | 126, 143, 307, 396, 763 |
| Sau96I | GGNCC | 2 cut(s) | 88, 118 |
| ScrFI | CCNGG | 3 cut(s) | 86, 505, 648 |
| SexAI | ACCWGGT | 1 cut(s) | 84 |
| SfaNI | GCATC | 4 cut(s) | 573, 641, 671, 777 |
| SinI | GGWCC | 1 cut(s) | 88 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 244, 336 |
| SnaBI | TACGTA | 1 cut(s) | 512 |
| Sse9I | AATT | 4 cut(s) | 167, 442, 449, 709 |
| SsiI | CCGC | 1 cut(s) | 617 |
| SspMI | CTAG | 2 cut(s) | 162, 572 |
| StyD4I | CCNGG | 3 cut(s) | 84, 503, 646 |
| StyI | CCWWGG | 1 cut(s) | 161 |
| TaaI | ACNGT | 3 cut(s) | 243, 286, 526 |
| TaiI | ACGT | 2 cut(s) | 197, 514 |
| TaqI | TCGA | 3 cut(s) | 401, 622, 766 |
| TasI | AATT | 4 cut(s) | 167, 442, 449, 709 |
| TfiI | GAWTC | 2 cut(s) | 346, 731 |
| Tru1I | TTAA | 1 cut(s) | 428 |
| Tru9I | TTAA | 1 cut(s) | 428 |
| TscAI | CASTG | 2 cut(s) | 246, 746 |
| TseFI | GTSAC | 2 cut(s) | 280, 289 |
| Tsp45I | GTSAC | 2 cut(s) | 280, 289 |
| TspDTI | ATGAA | 5 cut(s) | 248, 348, 548, 567, 687 |
| TspGWI | ACGGA | 3 cut(s) | 357, 776, 787 |
| TspRI | CASTG | 2 cut(s) | 246, 746 |
| VpaK11BI | GGWCC | 1 cut(s) | 88 |
| XapI | RAATTY | 1 cut(s) | 167 |
| XmaJI | CCTAGG | 1 cut(s) | 161 |
| XmnI | GAANNNNTTC | 1 cut(s) | 452 |
| XspI | CTAG | 2 cut(s) | 162, 572 |
| ZraI | GACGTC | 1 cut(s) | 195 |