Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 82 |
| AciI | CCGC | 2 cut(s) | 280, 416 |
| AclWI | GGATC | 4 cut(s) | 74, 366, 391, 404 |
| AcuI | CTGAAG | 1 cut(s) | 209 |
| AfaI | GTAC | 2 cut(s) | 231, 275 |
| AfeI | AGCGCT | 1 cut(s) | 156 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 406 |
| AjnI | CCWGG | 1 cut(s) | 12 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 144, 176 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 9, 41 |
| AluBI | AGCT | 1 cut(s) | 492 |
| AluI | AGCT | 1 cut(s) | 492 |
| Alw26I | GTCTC | 2 cut(s) | 223, 431 |
| AlwI | GGATC | 4 cut(s) | 74, 366, 391, 404 |
| Aor13HI | TCCGGA | 1 cut(s) | 82 |
| Aor51HI | AGCGCT | 1 cut(s) | 156 |
| ApeKI | GCWGC | 2 cut(s) | 338, 489 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 104 |
| AspA2I | CCTAGG | 1 cut(s) | 212 |
| AspLEI | GCGC | 2 cut(s) | 58, 157 |
| AspS9I | GGNCC | 1 cut(s) | 85 |
| AsuC2I | CCSGG | 2 cut(s) | 306, 401 |
| AsuHPI | GGTGA | 1 cut(s) | 256 |
| AsuII | TTCGAA | 1 cut(s) | 367 |
| AvaII | GGWCC | 1 cut(s) | 85 |
| AvrII | CCTAGG | 1 cut(s) | 212 |
| BamHI | GGATCC | 1 cut(s) | 396 |
| BbvI | GCAGC | 1 cut(s) | 325 |
| BccI | CCATC | 2 cut(s) | 341, 375 |
| BciT130I | CCWGG | 1 cut(s) | 14 |
| BcnI | CCSGG | 2 cut(s) | 306, 401 |
| BcoDI | GTCTC | 2 cut(s) | 223, 431 |
| BfaI | CTAG | 2 cut(s) | 213, 233 |
| BfoI | RGCGCY | 1 cut(s) | 158 |
| BisI | GCNGC | 2 cut(s) | 339, 490 |
| BlnI | CCTAGG | 1 cut(s) | 212 |
| BlsI | GCNGC | 2 cut(s) | 340, 491 |
| Bme1390I | CCNGG | 3 cut(s) | 14, 306, 401 |
| Bme18I | GGWCC | 1 cut(s) | 85 |
| BmgT120I | GGNCC | 1 cut(s) | 85 |
| BmiI | GGNNCC | 1 cut(s) | 398 |
| BmrFI | CCNGG | 3 cut(s) | 14, 306, 401 |
| Bpu14I | TTCGAA | 1 cut(s) | 367 |
| BpuMI | CCSGG | 2 cut(s) | 306, 401 |
| BsaI | GGTCTC | 1 cut(s) | 223 |
| BsaJI | CCNNGG | 4 cut(s) | 13, 212, 304, 342 |
| BsaWI | WCCGGW | 1 cut(s) | 82 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 9, 39 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 406 |
| Bse1I | ACTGG | 2 cut(s) | 88, 445 |
| BseAI | TCCGGA | 1 cut(s) | 82 |
| BseBI | CCWGG | 1 cut(s) | 14 |
| BseDI | CCNNGG | 4 cut(s) | 13, 212, 304, 342 |
| BseGI | GGATG | 1 cut(s) | 352 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 406 |
| BseMII | CTCAG | 2 cut(s) | 234, 368 |
| BseNI | ACTGG | 2 cut(s) | 88, 445 |
| BseRI | GAGGAG | 2 cut(s) | 62, 65 |
| BseXI | GCAGC | 1 cut(s) | 325 |
| Bsh1285I | CGRYCG | 1 cut(s) | 280 |
| BsiEI | CGRYCG | 1 cut(s) | 280 |
| BsiSI | CCGG | 3 cut(s) | 83, 306, 400 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 406 |
| BsmAI | GTCTC | 2 cut(s) | 223, 431 |
| BsmI | GAATGC | 1 cut(s) | 411 |
| Bso31I | GGTCTC | 1 cut(s) | 223 |
| Bsp119I | TTCGAA | 1 cut(s) | 367 |
| Bsp13I | TCCGGA | 1 cut(s) | 82 |
| Bsp143I | GATC | 3 cut(s) | 79, 358, 396 |
| BspACI | CCGC | 2 cut(s) | 280, 416 |
| BspCNI | CTCAG | 2 cut(s) | 233, 369 |
| BspEI | TCCGGA | 1 cut(s) | 82 |
| BspLI | GGNNCC | 1 cut(s) | 398 |
| BspPI | GGATC | 4 cut(s) | 74, 366, 391, 404 |
| BspT104I | TTCGAA | 1 cut(s) | 367 |
| BspTNI | GGTCTC | 1 cut(s) | 223 |
| BsrI | ACTGG | 2 cut(s) | 88, 445 |
| BssECI | CCNNGG | 4 cut(s) | 13, 212, 304, 342 |
| BssMI | GATC | 3 cut(s) | 79, 358, 396 |
| BssT1I | CCWWGG | 1 cut(s) | 212 |
| Bst2UI | CCWGG | 1 cut(s) | 14 |
| Bst6I | CTCTTC | 1 cut(s) | 429 |
| BstBI | TTCGAA | 1 cut(s) | 367 |
| BstDEI | CTNAG | 2 cut(s) | 220, 377 |
| BstDSI | CCRYGG | 1 cut(s) | 342 |
| BstF5I | GGATG | 1 cut(s) | 352 |
| BstH2I | RGCGCY | 1 cut(s) | 158 |
| BstHHI | GCGC | 2 cut(s) | 58, 157 |
| BstKTI | GATC | 3 cut(s) | 82, 361, 399 |
| BstMAI | GTCTC | 2 cut(s) | 223, 431 |
| BstMBI | GATC | 3 cut(s) | 79, 358, 396 |
| BstMCI | CGRYCG | 1 cut(s) | 280 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 329, 338 |
| BstNI | CCWGG | 1 cut(s) | 14 |
| BstNSI | RCATGY | 1 cut(s) | 484 |
| BstSCI | CCNGG | 3 cut(s) | 12, 304, 399 |
| BstV1I | GCAGC | 1 cut(s) | 325 |
| BstX2I | RGATCY | 2 cut(s) | 358, 396 |
| BstYI | RGATCY | 2 cut(s) | 358, 396 |
| BtgI | CCRYGG | 1 cut(s) | 342 |
| BtsCI | GGATG | 1 cut(s) | 352 |
| BtsIMutI | CAGTG | 2 cut(s) | 95, 185 |
| CfoI | GCGC | 2 cut(s) | 58, 157 |
| Cfr13I | GGNCC | 1 cut(s) | 85 |
| Csp6I | GTAC | 2 cut(s) | 230, 274 |
| CviAII | CATG | 4 cut(s) | 269, 427, 462, 481 |
| CviJI | RGCY | 7 cut(s) | 34, 97, 211, 303, 404, 456, 492 |
| CviKI_1 | RGCY | 7 cut(s) | 34, 97, 211, 303, 404, 456, 492 |
| CviQI | GTAC | 2 cut(s) | 230, 274 |
| DdeI | CTNAG | 2 cut(s) | 220, 377 |
| DpnI | GATC | 3 cut(s) | 81, 360, 398 |
| DpnII | GATC | 3 cut(s) | 79, 358, 396 |
| Eam1104I | CTCTTC | 1 cut(s) | 429 |
| EarI | CTCTTC | 1 cut(s) | 429 |
| EciI | GGCGGA | 1 cut(s) | 405 |
| Eco130I | CCWWGG | 1 cut(s) | 212 |
| Eco31I | GGTCTC | 1 cut(s) | 223 |
| Eco47I | GGWCC | 1 cut(s) | 85 |
| Eco47III | AGCGCT | 1 cut(s) | 156 |
| Eco57I | CTGAAG | 1 cut(s) | 209 |
| EcoRII | CCWGG | 1 cut(s) | 12 |
| EcoT14I | CCWWGG | 1 cut(s) | 212 |
| ErhI | CCWWGG | 1 cut(s) | 212 |
| FaeI | CATG | 4 cut(s) | 272, 430, 465, 484 |
| FaiI | YATR | 6 cut(s) | 149, 270, 295, 428, 463, 482 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 92, 124 |
| FatI | CATG | 4 cut(s) | 268, 426, 461, 480 |
| Fnu4HI | GCNGC | 2 cut(s) | 339, 490 |
| FokI | GGATG | 1 cut(s) | 359 |
| Fsp4HI | GCNGC | 2 cut(s) | 339, 490 |
| FspBI | CTAG | 2 cut(s) | 213, 233 |
| GlaI | GCGC | 2 cut(s) | 57, 156 |
| GluI | GCNGC | 2 cut(s) | 339, 490 |
| HaeII | RGCGCY | 1 cut(s) | 158 |
| HapII | CCGG | 3 cut(s) | 83, 306, 400 |
| HhaI | GCGC | 2 cut(s) | 58, 157 |
| Hin1II | CATG | 4 cut(s) | 272, 430, 465, 484 |
| Hin6I | GCGC | 2 cut(s) | 56, 155 |
| HinP1I | GCGC | 2 cut(s) | 56, 155 |
| HpaII | CCGG | 3 cut(s) | 83, 306, 400 |
| HphI | GGTGA | 1 cut(s) | 256 |
| Hpy166II | GTNNAC | 3 cut(s) | 183, 230, 264 |
| Hpy188I | TCNGA | 2 cut(s) | 42, 447 |
| Hpy188III | TCNNGA | 2 cut(s) | 83, 109 |
| Hpy8I | GTNNAC | 3 cut(s) | 183, 230, 264 |
| HpyAV | CCTTC | 2 cut(s) | 190, 374 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 329, 338 |
| HpyF3I | CTNAG | 2 cut(s) | 220, 377 |
| Hsp92II | CATG | 4 cut(s) | 272, 430, 465, 484 |
| HspAI | GCGC | 2 cut(s) | 56, 155 |
| Kpn2I | TCCGGA | 1 cut(s) | 82 |
| Kzo9I | GATC | 3 cut(s) | 79, 358, 396 |
| Lsp1109I | GCAGC | 1 cut(s) | 325 |
| MaeI | CTAG | 2 cut(s) | 213, 233 |
| MaeIII | GTNAC | 1 cut(s) | 242 |
| MalI | GATC | 3 cut(s) | 81, 360, 398 |
| MboI | GATC | 3 cut(s) | 79, 358, 396 |
| MboII | GAAGA | 4 cut(s) | 112, 202, 205, 446 |
| MflI | RGATCY | 2 cut(s) | 358, 396 |
| MluCI | AATT | 3 cut(s) | 369, 386, 450 |
| MnlI | CCTC | 7 cut(s) | 11, 40, 43, 46, 165, 349, 424 |
| MroI | TCCGGA | 1 cut(s) | 82 |
| MroXI | GAANNNNTTC | 1 cut(s) | 104 |
| MspI | CCGG | 3 cut(s) | 83, 306, 400 |
| MspR9I | CCNGG | 3 cut(s) | 14, 306, 401 |
| Mva1269I | GAATGC | 1 cut(s) | 411 |
| MvaI | CCWGG | 1 cut(s) | 14 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 329, 338 |
| NciI | CCSGG | 2 cut(s) | 306, 401 |
| NdeII | GATC | 3 cut(s) | 79, 358, 396 |
| NlaIII | CATG | 4 cut(s) | 272, 430, 465, 484 |
| NlaIV | GGNNCC | 1 cut(s) | 398 |
| NmuCI | GTSAC | 1 cut(s) | 242 |
| NspI | RCATGY | 1 cut(s) | 484 |
| NspV | TTCGAA | 1 cut(s) | 367 |
| PctI | GAATGC | 1 cut(s) | 411 |
| PdmI | GAANNNNTTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 2 cut(s) | 340, 491 |
| Psp6I | CCWGG | 1 cut(s) | 12 |
| PspGI | CCWGG | 1 cut(s) | 12 |
| PspN4I | GGNNCC | 1 cut(s) | 398 |
| PspPI | GGNCC | 1 cut(s) | 85 |
| PsuI | RGATCY | 2 cut(s) | 358, 396 |
| RsaI | GTAC | 2 cut(s) | 231, 275 |
| RsaNI | GTAC | 2 cut(s) | 230, 274 |
| SatI | GCNGC | 2 cut(s) | 339, 490 |
| Sau3AI | GATC | 3 cut(s) | 79, 358, 396 |
| Sau96I | GGNCC | 1 cut(s) | 85 |
| ScrFI | CCNGG | 3 cut(s) | 14, 306, 401 |
| SetI | ASST | 5 cut(s) | 15, 22, 201, 378, 494 |
| SfuI | TTCGAA | 1 cut(s) | 367 |
| SinI | GGWCC | 1 cut(s) | 85 |
| Sse9I | AATT | 3 cut(s) | 369, 386, 450 |
| SsiI | CCGC | 2 cut(s) | 280, 416 |
| SspMI | CTAG | 2 cut(s) | 213, 233 |
| StyD4I | CCNGG | 3 cut(s) | 12, 304, 399 |
| StyI | CCWWGG | 1 cut(s) | 212 |
| TaqI | TCGA | 1 cut(s) | 367 |
| TasI | AATT | 3 cut(s) | 369, 386, 450 |
| TatI | WGTACW | 1 cut(s) | 229 |
| TscAI | CASTG | 2 cut(s) | 95, 192 |
| TseFI | GTSAC | 1 cut(s) | 242 |
| TseI | GCWGC | 2 cut(s) | 338, 489 |
| Tsp45I | GTSAC | 1 cut(s) | 242 |
| TspGWI | ACGGA | 1 cut(s) | 359 |
| TspRI | CASTG | 2 cut(s) | 95, 192 |
| VpaK11BI | GGWCC | 1 cut(s) | 85 |
| XceI | RCATGY | 1 cut(s) | 484 |
| XmaJI | CCTAGG | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 104 |
| XspI | CTAG | 2 cut(s) | 213, 233 |