ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 184 - 205 | 4.2e-06 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 251, 788 |
| AclWI | GGATC | 1 cut(s) | 20 |
| AcsI | RAATTY | 1 cut(s) | 290 |
| AcuI | CTGAAG | 2 cut(s) | 25, 270 |
| AdeI | CACNNNGTG | 1 cut(s) | 698 |
| AfaI | GTAC | 2 cut(s) | 511, 554 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 125, 184, 533, 794 |
| AflIII | ACRYGT | 2 cut(s) | 710, 813 |
| AgsI | TTSAA | 2 cut(s) | 467, 619 |
| AhlI | ACTAGT | 1 cut(s) | 130 |
| AjnI | CCWGG | 1 cut(s) | 747 |
| AluBI | AGCT | 4 cut(s) | 169, 284, 625, 677 |
| AluI | AGCT | 4 cut(s) | 169, 284, 625, 677 |
| Alw26I | GTCTC | 1 cut(s) | 499 |
| AlwI | GGATC | 1 cut(s) | 20 |
| AoxI | GGCC | 1 cut(s) | 206 |
| ApeKI | GCWGC | 4 cut(s) | 115, 166, 281, 356 |
| ApoI | RAATTY | 1 cut(s) | 290 |
| AseI | ATTAAT | 1 cut(s) | 200 |
| AsuHPI | GGTGA | 1 cut(s) | 229 |
| AsuNHI | GCTAGC | 1 cut(s) | 253 |
| BauI | CACGAG | 1 cut(s) | 604 |
| BbsI | GAAGAC | 1 cut(s) | 713 |
| BbvI | GCAGC | 4 cut(s) | 127, 178, 293, 343 |
| BccI | CCATC | 3 cut(s) | 422, 586, 745 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 223, 257 |
| BciT130I | CCWGG | 1 cut(s) | 749 |
| BcoDI | GTCTC | 1 cut(s) | 499 |
| BcuI | ACTAGT | 1 cut(s) | 130 |
| BfaI | CTAG | 3 cut(s) | 59, 131, 254 |
| BisI | GCNGC | 4 cut(s) | 116, 167, 282, 357 |
| BlsI | GCNGC | 4 cut(s) | 117, 168, 283, 358 |
| Bme1390I | CCNGG | 1 cut(s) | 749 |
| BmiI | GGNNCC | 1 cut(s) | 433 |
| BmrFI | CCNGG | 1 cut(s) | 749 |
| BmsI | GCATC | 2 cut(s) | 73, 343 |
| BmtI | GCTAGC | 1 cut(s) | 257 |
| BoxI | GACNNNNGTC | 1 cut(s) | 739 |
| BpiI | GAAGAC | 1 cut(s) | 713 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 317, 349 |
| Bpu10I | CCTNAGC | 1 cut(s) | 138 |
| BpuEI | CTTGAG | 2 cut(s) | 252, 523 |
| BsaJI | CCNNGG | 1 cut(s) | 747 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 384, 414 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 125, 184, 533, 794 |
| BseBI | CCWGG | 1 cut(s) | 749 |
| BseDI | CCNNGG | 1 cut(s) | 747 |
| BseGI | GGATG | 4 cut(s) | 39, 247, 598, 724 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 125, 184, 533, 794 |
| BseMII | CTCAG | 3 cut(s) | 129, 471, 519 |
| BseRI | GAGGAG | 1 cut(s) | 554 |
| BseXI | GCAGC | 4 cut(s) | 127, 178, 293, 343 |
| BseYI | CCCAGC | 2 cut(s) | 383, 625 |
| BshFI | GGCC | 1 cut(s) | 208 |
| BsiSI | CCGG | 2 cut(s) | 566, 791 |
| BslFI | GGGAC | 1 cut(s) | 609 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 125, 184, 533, 794 |
| BsmAI | GTCTC | 1 cut(s) | 499 |
| BsmBI | CGTCTC | 1 cut(s) | 499 |
| BsmFI | GGGAC | 1 cut(s) | 609 |
| BsmI | GAATGC | 2 cut(s) | 283, 630 |
| BsnI | GGCC | 1 cut(s) | 208 |
| Bsp143I | GATC | 3 cut(s) | 12, 234, 484 |
| BspACI | CCGC | 2 cut(s) | 251, 788 |
| BspANI | GGCC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 3 cut(s) | 130, 470, 520 |
| BspHI | TCATGA | 1 cut(s) | 412 |
| BspLI | GGNNCC | 1 cut(s) | 433 |
| BspOI | GCTAGC | 1 cut(s) | 257 |
| BspPI | GGATC | 1 cut(s) | 20 |
| BssECI | CCNNGG | 1 cut(s) | 747 |
| BssMI | GATC | 3 cut(s) | 12, 234, 484 |
| BssSI | CACGAG | 1 cut(s) | 604 |
| Bst2BI | CACGAG | 1 cut(s) | 604 |
| Bst2UI | CCWGG | 1 cut(s) | 749 |
| Bst4CI | ACNGT | 1 cut(s) | 514 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 278 |
| BstC8I | GCNNGC | 2 cut(s) | 255, 331 |
| BstDEI | CTNAG | 4 cut(s) | 138, 457, 528, 695 |
| BstF5I | GGATG | 4 cut(s) | 39, 247, 598, 724 |
| BstKTI | GATC | 3 cut(s) | 15, 237, 487 |
| BstMAI | GTCTC | 1 cut(s) | 499 |
| BstMBI | GATC | 3 cut(s) | 12, 234, 484 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 70, 250, 269, 278, 458 |
| BstNI | CCWGG | 1 cut(s) | 749 |
| BstNSI | RCATGY | 1 cut(s) | 714 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 739 |
| BstSCI | CCNGG | 1 cut(s) | 747 |
| BstV1I | GCAGC | 4 cut(s) | 127, 178, 293, 343 |
| BstV2I | GAAGAC | 1 cut(s) | 713 |
| BstX2I | RGATCY | 1 cut(s) | 12 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 584 |
| BstYI | RGATCY | 1 cut(s) | 12 |
| BsuRI | GGCC | 1 cut(s) | 208 |
| BtsCI | GGATG | 4 cut(s) | 39, 247, 598, 724 |
| BtsI | GCAGTG | 1 cut(s) | 454 |
| BtsIMutI | CAGTG | 1 cut(s) | 454 |
| Cac8I | GCNNGC | 2 cut(s) | 255, 331 |
| CciI | TCATGA | 1 cut(s) | 412 |
| CseI | GACGC | 1 cut(s) | 678 |
| Csp6I | GTAC | 2 cut(s) | 510, 553 |
| CviAII | CATG | 6 cut(s) | 74, 105, 241, 413, 683, 711 |
| CviQI | GTAC | 2 cut(s) | 510, 553 |
| DdeI | CTNAG | 4 cut(s) | 138, 457, 528, 695 |
| DpnI | GATC | 3 cut(s) | 14, 236, 486 |
| DpnII | GATC | 3 cut(s) | 12, 234, 484 |
| DraIII | CACNNNGTG | 1 cut(s) | 698 |
| EciI | GGCGGA | 1 cut(s) | 777 |
| Eco57I | CTGAAG | 2 cut(s) | 25, 270 |
| EcoRII | CCWGG | 1 cut(s) | 747 |
| Esp3I | CGTCTC | 1 cut(s) | 499 |
| FaeI | CATG | 6 cut(s) | 77, 108, 244, 416, 686, 714 |
| FaqI | GGGAC | 1 cut(s) | 609 |
| FatI | CATG | 6 cut(s) | 73, 104, 240, 412, 682, 710 |
| Fnu4HI | GCNGC | 4 cut(s) | 116, 167, 282, 357 |
| FokI | GGATG | 4 cut(s) | 46, 234, 585, 731 |
| Fsp4HI | GCNGC | 4 cut(s) | 116, 167, 282, 357 |
| FspBI | CTAG | 3 cut(s) | 59, 131, 254 |
| GluI | GCNGC | 4 cut(s) | 116, 167, 282, 357 |
| GsaI | CCCAGC | 2 cut(s) | 387, 629 |
| HaeIII | GGCC | 1 cut(s) | 208 |
| HapII | CCGG | 2 cut(s) | 566, 791 |
| HgaI | GACGC | 1 cut(s) | 678 |
| Hin1II | CATG | 6 cut(s) | 77, 108, 244, 416, 686, 714 |
| HinfI | GANTC | 3 cut(s) | 95, 316, 416 |
| HpaII | CCGG | 2 cut(s) | 566, 791 |
| HphI | GGTGA | 1 cut(s) | 229 |
| Hpy166II | GTNNAC | 1 cut(s) | 655 |
| Hpy188I | TCNGA | 1 cut(s) | 289 |
| Hpy188III | TCNNGA | 7 cut(s) | 137, 413, 502, 527, 619, 716, 724 |
| Hpy8I | GTNNAC | 1 cut(s) | 655 |
| HpyAV | CCTTC | 3 cut(s) | 85, 641, 788 |
| HpyCH4III | ACNGT | 1 cut(s) | 514 |
| HpyCH4IV | ACGT | 2 cut(s) | 508, 813 |
| HpyCH4V | TGCA | 4 cut(s) | 115, 281, 298, 447 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 70, 250, 269, 278, 458 |
| HpyF3I | CTNAG | 4 cut(s) | 138, 457, 528, 695 |
| HpySE526I | ACGT | 2 cut(s) | 508, 813 |
| Hsp92II | CATG | 6 cut(s) | 77, 108, 244, 416, 686, 714 |
| Kzo9I | GATC | 3 cut(s) | 12, 234, 484 |
| LmnI | GCTCC | 2 cut(s) | 77, 431 |
| Lsp1109I | GCAGC | 4 cut(s) | 127, 178, 293, 343 |
| LweI | GCATC | 2 cut(s) | 73, 343 |
| MaeI | CTAG | 3 cut(s) | 59, 131, 254 |
| MaeII | ACGT | 2 cut(s) | 508, 813 |
| MaeIII | GTNAC | 2 cut(s) | 690, 799 |
| MalI | GATC | 3 cut(s) | 14, 236, 486 |
| MboI | GATC | 3 cut(s) | 12, 234, 484 |
| MboII | GAAGA | 4 cut(s) | 31, 164, 656, 718 |
| MflI | RGATCY | 1 cut(s) | 12 |
| MluCI | AATT | 4 cut(s) | 290, 342, 423, 468 |
| MlyI | GAGTC | 3 cut(s) | 89, 325, 410 |
| MmeI | TCCRAC | 1 cut(s) | 106 |
| MseI | TTAA | 3 cut(s) | 6, 200, 345 |
| MslI | CAYNNNNRTG | 1 cut(s) | 32 |
| MspA1I | CMGCKG | 1 cut(s) | 169 |
| MspI | CCGG | 2 cut(s) | 566, 791 |
| MspR9I | CCNGG | 1 cut(s) | 749 |
| Mva1269I | GAATGC | 2 cut(s) | 283, 630 |
| MvaI | CCWGG | 1 cut(s) | 749 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 70, 250, 269, 278, 458 |
| NdeII | GATC | 3 cut(s) | 12, 234, 484 |
| NheI | GCTAGC | 1 cut(s) | 253 |
| NlaIII | CATG | 6 cut(s) | 77, 108, 244, 416, 686, 714 |
| NlaIV | GGNNCC | 1 cut(s) | 433 |
| NmuCI | GTSAC | 1 cut(s) | 690 |
| NspI | RCATGY | 1 cut(s) | 714 |
| PagI | TCATGA | 1 cut(s) | 412 |
| PciI | ACATGT | 1 cut(s) | 710 |
| PctI | GAATGC | 2 cut(s) | 283, 630 |
| PkrI | GCNGC | 4 cut(s) | 117, 168, 283, 358 |
| PleI | GAGTC | 3 cut(s) | 89, 324, 410 |
| PpsI | GAGTC | 3 cut(s) | 89, 324, 410 |
| PscI | ACATGT | 1 cut(s) | 710 |
| PshAI | GACNNNNGTC | 1 cut(s) | 739 |
| PshBI | ATTAAT | 1 cut(s) | 200 |
| Psp6I | CCWGG | 1 cut(s) | 747 |
| PspFI | CCCAGC | 2 cut(s) | 383, 625 |
| PspGI | CCWGG | 1 cut(s) | 747 |
| PspN4I | GGNNCC | 1 cut(s) | 433 |
| PsuI | RGATCY | 1 cut(s) | 12 |
| PvuII | CAGCTG | 1 cut(s) | 169 |
| RsaI | GTAC | 2 cut(s) | 511, 554 |
| RsaNI | GTAC | 2 cut(s) | 510, 553 |
| RseI | CAYNNNNRTG | 1 cut(s) | 32 |
| SaqAI | TTAA | 3 cut(s) | 6, 200, 345 |
| SatI | GCNGC | 4 cut(s) | 116, 167, 282, 357 |
| Sau3AI | GATC | 3 cut(s) | 12, 234, 484 |
| SchI | GAGTC | 3 cut(s) | 89, 325, 410 |
| ScrFI | CCNGG | 1 cut(s) | 749 |
| SfaNI | GCATC | 2 cut(s) | 73, 343 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 32 |
| SmlI | CTYRAG | 2 cut(s) | 267, 502 |
| SmoI | CTYRAG | 2 cut(s) | 267, 502 |
| SpeI | ACTAGT | 1 cut(s) | 130 |
| Sse9I | AATT | 4 cut(s) | 290, 342, 423, 468 |
| SsiI | CCGC | 2 cut(s) | 251, 788 |
| SspMI | CTAG | 3 cut(s) | 59, 131, 254 |
| StyD4I | CCNGG | 1 cut(s) | 747 |
| TaaI | ACNGT | 1 cut(s) | 514 |
| TaiI | ACGT | 2 cut(s) | 511, 816 |
| TaqI | TCGA | 1 cut(s) | 483 |
| TasI | AATT | 4 cut(s) | 290, 342, 423, 468 |
| Tru1I | TTAA | 3 cut(s) | 6, 200, 345 |
| Tru9I | TTAA | 3 cut(s) | 6, 200, 345 |
| TscAI | CASTG | 1 cut(s) | 454 |
| TseFI | GTSAC | 1 cut(s) | 690 |
| TseI | GCWGC | 4 cut(s) | 115, 166, 281, 356 |
| Tsp45I | GTSAC | 1 cut(s) | 690 |
| TspGWI | ACGGA | 1 cut(s) | 46 |
| TspRI | CASTG | 1 cut(s) | 454 |
| VspI | ATTAAT | 1 cut(s) | 200 |
| XapI | RAATTY | 1 cut(s) | 290 |
| XceI | RCATGY | 1 cut(s) | 714 |
| XspI | CTAG | 3 cut(s) | 59, 131, 254 |