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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 535 |
| AciI | CCGC | 3 cut(s) | 204, 207, 665 |
| AclWI | GGATC | 2 cut(s) | 467, 480 |
| AcsI | RAATTY | 1 cut(s) | 16 |
| AdeI | CACNNNGTG | 1 cut(s) | 462 |
| AfaI | GTAC | 3 cut(s) | 455, 538, 824 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 482, 521, 732, 853 |
| AgsI | TTSAA | 1 cut(s) | 47 |
| AluBI | AGCT | 8 cut(s) | 28, 74, 131, 140, 164, 322, 788, 808 |
| AluI | AGCT | 8 cut(s) | 28, 74, 131, 140, 164, 322, 788, 808 |
| Alw21I | GWGCWC | 1 cut(s) | 592 |
| Alw26I | GTCTC | 1 cut(s) | 636 |
| AlwI | GGATC | 2 cut(s) | 467, 480 |
| Ama87I | CYCGRG | 2 cut(s) | 760, 781 |
| ApeKI | GCWGC | 2 cut(s) | 74, 161 |
| ApoI | RAATTY | 1 cut(s) | 16 |
| AsiSI | GCGATCGC | 1 cut(s) | 533 |
| AspLEI | GCGC | 2 cut(s) | 328, 719 |
| AsuC2I | CCSGG | 4 cut(s) | 477, 575, 782, 783 |
| AsuHPI | GGTGA | 2 cut(s) | 68, 683 |
| AvaI | CYCGRG | 2 cut(s) | 760, 781 |
| BamHI | GGATCC | 1 cut(s) | 472 |
| BbsI | GAAGAC | 2 cut(s) | 96, 300 |
| Bbv12I | GWGCWC | 1 cut(s) | 592 |
| BbvI | GCAGC | 2 cut(s) | 61, 173 |
| BccI | CCATC | 5 cut(s) | 53, 283, 299, 627, 632 |
| BceAI | ACGGC | 1 cut(s) | 542 |
| BcnI | CCSGG | 4 cut(s) | 477, 575, 782, 783 |
| BcoDI | GTCTC | 1 cut(s) | 636 |
| BfaI | CTAG | 2 cut(s) | 128, 186 |
| BfoI | RGCGCY | 1 cut(s) | 720 |
| BisI | GCNGC | 3 cut(s) | 75, 162, 205 |
| BlpI | GCTNAGC | 1 cut(s) | 29 |
| BlsI | GCNGC | 3 cut(s) | 76, 163, 206 |
| Bme1390I | CCNGG | 4 cut(s) | 477, 575, 782, 783 |
| BmeT110I | CYCGRG | 2 cut(s) | 760, 781 |
| BmiI | GGNNCC | 2 cut(s) | 235, 474 |
| BmrFI | CCNGG | 4 cut(s) | 477, 575, 782, 783 |
| BmsI | GCATC | 2 cut(s) | 286, 574 |
| BpiI | GAAGAC | 2 cut(s) | 96, 300 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 29 |
| BpuMI | CCSGG | 4 cut(s) | 477, 575, 782, 783 |
| Bsa29I | ATCGAT | 1 cut(s) | 303 |
| BsaBI | GATNNNNATC | 1 cut(s) | 776 |
| BsaJI | CCNNGG | 4 cut(s) | 229, 593, 711, 781 |
| BsaWI | WCCGGW | 1 cut(s) | 521 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 218, 248, 731, 761 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 482, 521, 732, 853 |
| Bse118I | RCCGGY | 1 cut(s) | 621 |
| Bse1I | ACTGG | 1 cut(s) | 650 |
| Bse8I | GATNNNNATC | 1 cut(s) | 776 |
| BseCI | ATCGAT | 1 cut(s) | 303 |
| BseDI | CCNNGG | 4 cut(s) | 229, 593, 711, 781 |
| BseGI | GGATG | 2 cut(s) | 10, 643 |
| BseJI | GATNNNNATC | 1 cut(s) | 776 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 482, 521, 732, 853 |
| BseMII | CTCAG | 1 cut(s) | 43 |
| BseNI | ACTGG | 1 cut(s) | 650 |
| BseRI | GAGGAG | 1 cut(s) | 353 |
| BseXI | GCAGC | 2 cut(s) | 61, 173 |
| Bsh1236I | CGCG | 1 cut(s) | 535 |
| Bsh1285I | CGRYCG | 2 cut(s) | 533, 669 |
| BshVI | ATCGAT | 1 cut(s) | 303 |
| BsiEI | CGRYCG | 2 cut(s) | 533, 669 |
| BsiHKAI | GWGCWC | 1 cut(s) | 592 |
| BsiHKCI | CYCGRG | 2 cut(s) | 760, 781 |
| BsiSI | CCGG | 5 cut(s) | 477, 522, 574, 622, 782 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 482, 521, 732, 853 |
| BsmAI | GTCTC | 1 cut(s) | 636 |
| BsoBI | CYCGRG | 2 cut(s) | 760, 781 |
| Bsp1286I | GDGCHC | 1 cut(s) | 592 |
| Bsp143I | GATC | 6 cut(s) | 148, 300, 342, 472, 494, 530 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 29 |
| BspACI | CCGC | 3 cut(s) | 204, 207, 665 |
| BspCNI | CTCAG | 1 cut(s) | 42 |
| BspDI | ATCGAT | 1 cut(s) | 303 |
| BspFNI | CGCG | 1 cut(s) | 535 |
| BspLI | GGNNCC | 2 cut(s) | 235, 474 |
| BspPI | GGATC | 2 cut(s) | 467, 480 |
| BsrFI | RCCGGY | 1 cut(s) | 621 |
| BsrI | ACTGG | 1 cut(s) | 650 |
| BssAI | RCCGGY | 1 cut(s) | 621 |
| BssECI | CCNNGG | 4 cut(s) | 229, 593, 711, 781 |
| BssMI | GATC | 6 cut(s) | 148, 300, 342, 472, 494, 530 |
| BssT1I | CCWWGG | 1 cut(s) | 711 |
| Bst4CI | ACNGT | 2 cut(s) | 414, 594 |
| BstC8I | GCNNGC | 1 cut(s) | 324 |
| BstDEI | CTNAG | 2 cut(s) | 29, 196 |
| BstDSI | CCRYGG | 1 cut(s) | 593 |
| BstF5I | GGATG | 2 cut(s) | 10, 643 |
| BstFNI | CGCG | 1 cut(s) | 535 |
| BstH2I | RGCGCY | 1 cut(s) | 720 |
| BstHHI | GCGC | 2 cut(s) | 328, 719 |
| BstKTI | GATC | 6 cut(s) | 151, 303, 345, 475, 497, 533 |
| BstMAI | GTCTC | 1 cut(s) | 636 |
| BstMBI | GATC | 6 cut(s) | 148, 300, 342, 472, 494, 530 |
| BstMCI | CGRYCG | 2 cut(s) | 533, 669 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 80, 137, 170, 378 |
| BstSCI | CCNGG | 4 cut(s) | 475, 573, 780, 781 |
| BstUI | CGCG | 1 cut(s) | 535 |
| BstV1I | GCAGC | 2 cut(s) | 61, 173 |
| BstV2I | GAAGAC | 2 cut(s) | 96, 300 |
| BstX2I | RGATCY | 1 cut(s) | 472 |
| BstYI | RGATCY | 1 cut(s) | 472 |
| Bsu15I | ATCGAT | 1 cut(s) | 303 |
| BsuTUI | ATCGAT | 1 cut(s) | 303 |
| BtgI | CCRYGG | 1 cut(s) | 593 |
| BtgZI | GCGATG | 1 cut(s) | 374 |
| BtsCI | GGATG | 2 cut(s) | 10, 643 |
| Cac8I | GCNNGC | 1 cut(s) | 324 |
| CfoI | GCGC | 2 cut(s) | 328, 719 |
| Cfr10I | RCCGGY | 1 cut(s) | 621 |
| Cfr9I | CCCGGG | 1 cut(s) | 781 |
| ClaI | ATCGAT | 1 cut(s) | 303 |
| Csp6I | GTAC | 3 cut(s) | 454, 537, 823 |
| CviAII | CATG | 5 cut(s) | 53, 89, 286, 298, 792 |
| CviQI | GTAC | 3 cut(s) | 454, 537, 823 |
| DdeI | CTNAG | 2 cut(s) | 29, 196 |
| DpnI | GATC | 6 cut(s) | 150, 302, 344, 474, 496, 532 |
| DpnII | GATC | 6 cut(s) | 148, 300, 342, 472, 494, 530 |
| DraIII | CACNNNGTG | 1 cut(s) | 462 |
| EciI | GGCGGA | 1 cut(s) | 222 |
| Eco130I | CCWWGG | 1 cut(s) | 711 |
| Eco88I | CYCGRG | 2 cut(s) | 760, 781 |
| EcoT14I | CCWWGG | 1 cut(s) | 711 |
| ErhI | CCWWGG | 1 cut(s) | 711 |
| FaeI | CATG | 5 cut(s) | 56, 92, 289, 301, 795 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 599, 631 |
| FatI | CATG | 5 cut(s) | 52, 88, 285, 297, 791 |
| FauNDI | CATATG | 1 cut(s) | 601 |
| Fnu4HI | GCNGC | 3 cut(s) | 75, 162, 205 |
| FokI | GGATG | 2 cut(s) | 17, 650 |
| Fsp4HI | GCNGC | 3 cut(s) | 75, 162, 205 |
| FspBI | CTAG | 2 cut(s) | 128, 186 |
| GlaI | GCGC | 2 cut(s) | 327, 718 |
| GluI | GCNGC | 3 cut(s) | 75, 162, 205 |
| HaeII | RGCGCY | 1 cut(s) | 720 |
| HapII | CCGG | 5 cut(s) | 477, 522, 574, 622, 782 |
| HhaI | GCGC | 2 cut(s) | 328, 719 |
| Hin1II | CATG | 5 cut(s) | 56, 92, 289, 301, 795 |
| Hin6I | GCGC | 2 cut(s) | 326, 717 |
| HinP1I | GCGC | 2 cut(s) | 326, 717 |
| HincII | GTYRAC | 2 cut(s) | 417, 519 |
| HindII | GTYRAC | 2 cut(s) | 417, 519 |
| HindIII | AAGCTT | 1 cut(s) | 320 |
| HinfI | GANTC | 2 cut(s) | 440, 480 |
| HpaI | GTTAAC | 1 cut(s) | 417 |
| HpaII | CCGG | 5 cut(s) | 477, 522, 574, 622, 782 |
| HphI | GGTGA | 2 cut(s) | 68, 683 |
| Hpy166II | GTNNAC | 3 cut(s) | 417, 456, 519 |
| Hpy188I | TCNGA | 3 cut(s) | 222, 318, 727 |
| Hpy188III | TCNNGA | 2 cut(s) | 750, 760 |
| Hpy8I | GTNNAC | 3 cut(s) | 417, 456, 519 |
| Hpy99I | CGWCG | 1 cut(s) | 334 |
| HpyAV | CCTTC | 4 cut(s) | 328, 601, 685, 760 |
| HpyCH4III | ACNGT | 2 cut(s) | 414, 594 |
| HpyCH4V | TGCA | 4 cut(s) | 83, 173, 285, 619 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 80, 137, 170, 378 |
| HpyF3I | CTNAG | 2 cut(s) | 29, 196 |
| Hsp92II | CATG | 5 cut(s) | 56, 92, 289, 301, 795 |
| HspAI | GCGC | 2 cut(s) | 326, 717 |
| KspAI | GTTAAC | 1 cut(s) | 417 |
| Kzo9I | GATC | 6 cut(s) | 148, 300, 342, 472, 494, 530 |
| LmnI | GCTCC | 2 cut(s) | 239, 785 |
| LpnPI | CCDG | 9 cut(s) | 126, 490, 535, 587, 631, 635, 636, 672, 795 |
| Lsp1109I | GCAGC | 2 cut(s) | 61, 173 |
| LweI | GCATC | 2 cut(s) | 286, 574 |
| MaeI | CTAG | 2 cut(s) | 128, 186 |
| MaeIII | GTNAC | 1 cut(s) | 671 |
| MalI | GATC | 6 cut(s) | 150, 302, 344, 474, 496, 532 |
| MboI | GATC | 6 cut(s) | 148, 300, 342, 472, 494, 530 |
| MboII | GAAGA | 2 cut(s) | 96, 305 |
| MfeI | CAATTG | 1 cut(s) | 116 |
| MflI | RGATCY | 1 cut(s) | 472 |
| MhlI | GDGCHC | 1 cut(s) | 592 |
| MluCI | AATT | 3 cut(s) | 16, 116, 168 |
| MmeI | TCCRAC | 2 cut(s) | 296, 798 |
| MnlI | CCTC | 9 cut(s) | 239, 248, 331, 343, 372, 571, 733, 756, 767 |
| MseI | TTAA | 6 cut(s) | 23, 251, 416, 446, 581, 859 |
| MslI | CAYNNNNRTG | 1 cut(s) | 57 |
| MspI | CCGG | 5 cut(s) | 477, 522, 574, 622, 782 |
| MspR9I | CCNGG | 4 cut(s) | 477, 575, 782, 783 |
| MunI | CAATTG | 1 cut(s) | 116 |
| MvnI | CGCG | 1 cut(s) | 535 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 80, 137, 170, 378 |
| NciI | CCSGG | 4 cut(s) | 477, 575, 782, 783 |
| NdeI | CATATG | 1 cut(s) | 601 |
| NdeII | GATC | 6 cut(s) | 148, 300, 342, 472, 494, 530 |
| NlaIII | CATG | 5 cut(s) | 56, 92, 289, 301, 795 |
| NlaIV | GGNNCC | 2 cut(s) | 235, 474 |
| NmeAIII | GCCGAG | 1 cut(s) | 210 |
| NmuCI | GTSAC | 1 cut(s) | 671 |
| PaeR7I | CTCGAG | 1 cut(s) | 760 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 532, 539 |
| PfeI | GAWTC | 2 cut(s) | 440, 480 |
| PflFI | GACNNNGTC | 1 cut(s) | 677 |
| PfoI | TCCNGGA | 1 cut(s) | 475 |
| PkrI | GCNGC | 3 cut(s) | 76, 163, 206 |
| Ple19I | CGATCG | 1 cut(s) | 533 |
| PspN4I | GGNNCC | 2 cut(s) | 235, 474 |
| PsuI | RGATCY | 1 cut(s) | 472 |
| PsyI | GACNNNGTC | 1 cut(s) | 677 |
| PvuI | CGATCG | 1 cut(s) | 533 |
| RgaI | GCGATCGC | 1 cut(s) | 533 |
| RsaI | GTAC | 3 cut(s) | 455, 538, 824 |
| RsaNI | GTAC | 3 cut(s) | 454, 537, 823 |
| RseI | CAYNNNNRTG | 1 cut(s) | 57 |
| SaqAI | TTAA | 6 cut(s) | 23, 251, 416, 446, 581, 859 |
| SatI | GCNGC | 3 cut(s) | 75, 162, 205 |
| Sau3AI | GATC | 6 cut(s) | 148, 300, 342, 472, 494, 530 |
| ScrFI | CCNGG | 4 cut(s) | 477, 575, 782, 783 |
| SduI | GDGCHC | 1 cut(s) | 592 |
| SfaAI | GCGATCGC | 1 cut(s) | 533 |
| SfaNI | GCATC | 2 cut(s) | 286, 574 |
| Sfr274I | CTCGAG | 1 cut(s) | 760 |
| SgfI | GCGATCGC | 1 cut(s) | 533 |
| SgrAI | CRCCGGYG | 1 cut(s) | 621 |
| SlaI | CTCGAG | 1 cut(s) | 760 |
| SmaI | CCCGGG | 1 cut(s) | 783 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 57 |
| SmlI | CTYRAG | 1 cut(s) | 760 |
| SmoI | CTYRAG | 1 cut(s) | 760 |
| Sse9I | AATT | 3 cut(s) | 16, 116, 168 |
| SsiI | CCGC | 3 cut(s) | 204, 207, 665 |
| SspMI | CTAG | 2 cut(s) | 128, 186 |
| StyD4I | CCNGG | 4 cut(s) | 475, 573, 780, 781 |
| StyI | CCWWGG | 1 cut(s) | 711 |
| TaaI | ACNGT | 2 cut(s) | 414, 594 |
| TaqI | TCGA | 4 cut(s) | 303, 364, 749, 761 |
| TasI | AATT | 3 cut(s) | 16, 116, 168 |
| TatI | WGTACW | 1 cut(s) | 453 |
| TauI | GCSGC | 1 cut(s) | 207 |
| TfiI | GAWTC | 2 cut(s) | 440, 480 |
| Tru1I | TTAA | 6 cut(s) | 23, 251, 416, 446, 581, 859 |
| Tru9I | TTAA | 6 cut(s) | 23, 251, 416, 446, 581, 859 |
| TseFI | GTSAC | 1 cut(s) | 671 |
| TseI | GCWGC | 2 cut(s) | 74, 161 |
| Tsp45I | GTSAC | 1 cut(s) | 671 |
| TspDTI | ATGAA | 1 cut(s) | 780 |
| TspGWI | ACGGA | 3 cut(s) | 452, 504, 836 |
| TspMI | CCCGGG | 1 cut(s) | 781 |
| Tth111I | GACNNNGTC | 1 cut(s) | 677 |
| XapI | RAATTY | 1 cut(s) | 16 |
| XhoI | CTCGAG | 1 cut(s) | 760 |
| XmaI | CCCGGG | 1 cut(s) | 781 |
| XspI | CTAG | 2 cut(s) | 128, 186 |