Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 56 - 136 | 4.8e-13 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 282 |
| AciI | CCGC | 2 cut(s) | 113, 320 |
| AclWI | GGATC | 2 cut(s) | 248, 398 |
| AcsI | RAATTY | 2 cut(s) | 283, 333 |
| AfaI | GTAC | 4 cut(s) | 7, 170, 229, 417 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 127 |
| AflII | CTTAAG | 1 cut(s) | 122 |
| AgsI | TTSAA | 4 cut(s) | 208, 267, 275, 412 |
| Alw26I | GTCTC | 2 cut(s) | 162, 178 |
| AlwI | GGATC | 2 cut(s) | 248, 398 |
| ApeKI | GCWGC | 1 cut(s) | 345 |
| ApoI | RAATTY | 2 cut(s) | 283, 333 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 203 |
| AspS9I | GGNCC | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 2 cut(s) | 88, 269 |
| AsuII | TTCGAA | 1 cut(s) | 197 |
| AvaII | GGWCC | 1 cut(s) | 118 |
| BbvI | GCAGC | 1 cut(s) | 357 |
| BccI | CCATC | 2 cut(s) | 58, 386 |
| BcoDI | GTCTC | 2 cut(s) | 162, 178 |
| BfrI | CTTAAG | 1 cut(s) | 122 |
| BfuAI | ACCTGC | 1 cut(s) | 282 |
| BisI | GCNGC | 1 cut(s) | 346 |
| BlsI | GCNGC | 1 cut(s) | 347 |
| BmcAI | AGTACT | 2 cut(s) | 170, 229 |
| Bme18I | GGWCC | 1 cut(s) | 118 |
| BmgT120I | GGNCC | 1 cut(s) | 118 |
| BmsI | GCATC | 1 cut(s) | 307 |
| Bpu14I | TTCGAA | 1 cut(s) | 197 |
| BpuEI | CTTGAG | 1 cut(s) | 146 |
| BsaJI | CCNNGG | 1 cut(s) | 350 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 140, 170 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 127 |
| Bse1I | ACTGG | 2 cut(s) | 102, 176 |
| BseDI | CCNNGG | 1 cut(s) | 350 |
| BseGI | GGATG | 1 cut(s) | 397 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 127 |
| BseNI | ACTGG | 2 cut(s) | 102, 176 |
| BseXI | GCAGC | 1 cut(s) | 357 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 127 |
| BsmAI | GTCTC | 2 cut(s) | 162, 178 |
| Bsp119I | TTCGAA | 1 cut(s) | 197 |
| Bsp143I | GATC | 2 cut(s) | 240, 403 |
| Bsp19I | CCATGG | 1 cut(s) | 350 |
| BspACI | CCGC | 2 cut(s) | 113, 320 |
| BspMI | ACCTGC | 1 cut(s) | 282 |
| BspPI | GGATC | 2 cut(s) | 248, 398 |
| BspT104I | TTCGAA | 1 cut(s) | 197 |
| BspTI | CTTAAG | 1 cut(s) | 122 |
| BsrI | ACTGG | 2 cut(s) | 102, 176 |
| BssECI | CCNNGG | 1 cut(s) | 350 |
| BssMI | GATC | 2 cut(s) | 240, 403 |
| BssT1I | CCWWGG | 1 cut(s) | 350 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 230 |
| BstAFI | CTTAAG | 1 cut(s) | 122 |
| BstBI | TTCGAA | 1 cut(s) | 197 |
| BstDEI | CTNAG | 1 cut(s) | 338 |
| BstDSI | CCRYGG | 1 cut(s) | 350 |
| BstF5I | GGATG | 1 cut(s) | 397 |
| BstKTI | GATC | 2 cut(s) | 243, 406 |
| BstMAI | GTCTC | 2 cut(s) | 162, 178 |
| BstMBI | GATC | 2 cut(s) | 240, 403 |
| BstV1I | GCAGC | 1 cut(s) | 357 |
| BstX2I | RGATCY | 1 cut(s) | 240 |
| BstYI | RGATCY | 1 cut(s) | 240 |
| BtgI | CCRYGG | 1 cut(s) | 350 |
| BtsCI | GGATG | 1 cut(s) | 397 |
| BveI | ACCTGC | 1 cut(s) | 282 |
| Cfr13I | GGNCC | 1 cut(s) | 118 |
| Csp6I | GTAC | 4 cut(s) | 6, 169, 228, 416 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 24, 59 |
| CviAII | CATG | 1 cut(s) | 351 |
| CviJI | RGCY | 3 cut(s) | 19, 348, 386 |
| CviKI_1 | RGCY | 3 cut(s) | 19, 348, 386 |
| CviQI | GTAC | 4 cut(s) | 6, 169, 228, 416 |
| DdeI | CTNAG | 1 cut(s) | 338 |
| DpnI | GATC | 2 cut(s) | 242, 405 |
| DpnII | GATC | 2 cut(s) | 240, 403 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 230 |
| EarI | CTCTTC | 2 cut(s) | 63, 230 |
| EciI | GGCGGA | 1 cut(s) | 128 |
| Eco130I | CCWWGG | 1 cut(s) | 350 |
| Eco47I | GGWCC | 1 cut(s) | 118 |
| EcoO109I | RGGNCCY | 1 cut(s) | 118 |
| EcoRI | GAATTC | 1 cut(s) | 283 |
| EcoT14I | CCWWGG | 1 cut(s) | 350 |
| ErhI | CCWWGG | 1 cut(s) | 350 |
| FaeI | CATG | 1 cut(s) | 354 |
| FaiI | YATR | 6 cut(s) | 13, 155, 233, 249, 352, 389 |
| FatI | CATG | 1 cut(s) | 350 |
| Fnu4HI | GCNGC | 1 cut(s) | 346 |
| FokI | GGATG | 1 cut(s) | 404 |
| Fsp4HI | GCNGC | 1 cut(s) | 346 |
| GluI | GCNGC | 1 cut(s) | 346 |
| Hin1II | CATG | 1 cut(s) | 354 |
| HinfI | GANTC | 1 cut(s) | 215 |
| HphI | GGTGA | 2 cut(s) | 88, 269 |
| Hpy188I | TCNGA | 3 cut(s) | 109, 225, 403 |
| Hpy188III | TCNNGA | 1 cut(s) | 163 |
| HpyF3I | CTNAG | 1 cut(s) | 338 |
| Hsp92II | CATG | 1 cut(s) | 354 |
| Kzo9I | GATC | 2 cut(s) | 240, 403 |
| LpnPI | CCDG | 6 cut(s) | 5, 83, 157, 229, 273, 277 |
| Lsp1109I | GCAGC | 1 cut(s) | 357 |
| LweI | GCATC | 1 cut(s) | 307 |
| MaeIII | GTNAC | 1 cut(s) | 216 |
| MalI | GATC | 2 cut(s) | 242, 405 |
| MboI | GATC | 2 cut(s) | 240, 403 |
| MboII | GAAGA | 3 cut(s) | 73, 80, 247 |
| MflI | RGATCY | 1 cut(s) | 240 |
| MluCI | AATT | 5 cut(s) | 102, 192, 267, 283, 333 |
| MlyI | GAGTC | 1 cut(s) | 224 |
| MnlI | CCTC | 8 cut(s) | 64, 103, 109, 142, 231, 253, 321, 335 |
| MroXI | GAANNNNTTC | 1 cut(s) | 203 |
| MseI | TTAA | 3 cut(s) | 123, 132, 252 |
| MspCI | CTTAAG | 1 cut(s) | 122 |
| NcoI | CCATGG | 1 cut(s) | 350 |
| NdeII | GATC | 2 cut(s) | 240, 403 |
| NlaIII | CATG | 1 cut(s) | 354 |
| NmeAIII | GCCGAG | 1 cut(s) | 362 |
| NmuCI | GTSAC | 1 cut(s) | 216 |
| NspV | TTCGAA | 1 cut(s) | 197 |
| PdmI | GAANNNNTTC | 1 cut(s) | 203 |
| PkrI | GCNGC | 1 cut(s) | 347 |
| PleI | GAGTC | 1 cut(s) | 223 |
| PpsI | GAGTC | 1 cut(s) | 223 |
| PpuMI | RGGWCCY | 1 cut(s) | 118 |
| Psp5II | RGGWCCY | 1 cut(s) | 118 |
| PspPI | GGNCC | 1 cut(s) | 118 |
| PspPPI | RGGWCCY | 1 cut(s) | 118 |
| PsuI | RGATCY | 1 cut(s) | 240 |
| RsaI | GTAC | 4 cut(s) | 7, 170, 229, 417 |
| RsaNI | GTAC | 4 cut(s) | 6, 169, 228, 416 |
| SaqAI | TTAA | 3 cut(s) | 123, 132, 252 |
| SatI | GCNGC | 1 cut(s) | 346 |
| Sau3AI | GATC | 2 cut(s) | 240, 403 |
| Sau96I | GGNCC | 1 cut(s) | 118 |
| ScaI | AGTACT | 2 cut(s) | 170, 229 |
| SchI | GAGTC | 1 cut(s) | 224 |
| SetI | ASST | 8 cut(s) | 75, 123, 129, 205, 259, 264, 296, 421 |
| SfaNI | GCATC | 1 cut(s) | 307 |
| SfuI | TTCGAA | 1 cut(s) | 197 |
| SinI | GGWCC | 1 cut(s) | 118 |
| SmlI | CTYRAG | 2 cut(s) | 122, 161 |
| SmoI | CTYRAG | 2 cut(s) | 122, 161 |
| Sse9I | AATT | 5 cut(s) | 102, 192, 267, 283, 333 |
| SsiI | CCGC | 2 cut(s) | 113, 320 |
| StyI | CCWWGG | 1 cut(s) | 350 |
| TaqI | TCGA | 1 cut(s) | 197 |
| TasI | AATT | 5 cut(s) | 102, 192, 267, 283, 333 |
| TatI | WGTACW | 2 cut(s) | 168, 227 |
| Tru1I | TTAA | 3 cut(s) | 123, 132, 252 |
| Tru9I | TTAA | 3 cut(s) | 123, 132, 252 |
| TseFI | GTSAC | 1 cut(s) | 216 |
| TseI | GCWGC | 1 cut(s) | 345 |
| Tsp45I | GTSAC | 1 cut(s) | 216 |
| TspDTI | ATGAA | 1 cut(s) | 248 |
| Vha464I | CTTAAG | 1 cut(s) | 122 |
| VpaK11BI | GGWCC | 1 cut(s) | 118 |
| XapI | RAATTY | 2 cut(s) | 283, 333 |
| XmnI | GAANNNNTTC | 1 cut(s) | 203 |
| ZrmI | AGTACT | 2 cut(s) | 170, 229 |