Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| IF-2B | PF01008 | 34 - 111 | 5.7e-18 | Initiation factor 2 subunit family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 110 |
| AciI | CCGC | 1 cut(s) | 108 |
| AcoI | YGGCCR | 1 cut(s) | 347 |
| AcsI | RAATTY | 1 cut(s) | 155 |
| AfaI | GTAC | 1 cut(s) | 150 |
| AfeI | AGCGCT | 1 cut(s) | 279 |
| AgsI | TTSAA | 1 cut(s) | 141 |
| AluBI | AGCT | 2 cut(s) | 51, 218 |
| AluI | AGCT | 2 cut(s) | 51, 218 |
| Alw21I | GWGCWC | 3 cut(s) | 105, 220, 336 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 54 |
| Aor51HI | AGCGCT | 1 cut(s) | 279 |
| AoxI | GGCC | 1 cut(s) | 347 |
| ApeKI | GCWGC | 3 cut(s) | 48, 51, 167 |
| ApoI | RAATTY | 1 cut(s) | 155 |
| AspLEI | GCGC | 1 cut(s) | 280 |
| AxyI | CCTNAGG | 1 cut(s) | 114 |
| BalI | TGGCCA | 1 cut(s) | 349 |
| BanII | GRGCYC | 1 cut(s) | 220 |
| Bbv12I | GWGCWC | 3 cut(s) | 105, 220, 336 |
| BbvI | GCAGC | 3 cut(s) | 38, 60, 154 |
| BclI | TGATCA | 1 cut(s) | 321 |
| BfaI | CTAG | 1 cut(s) | 131 |
| BfoI | RGCGCY | 1 cut(s) | 281 |
| BisI | GCNGC | 3 cut(s) | 49, 52, 168 |
| BlsI | GCNGC | 3 cut(s) | 50, 53, 169 |
| BmsI | GCATC | 1 cut(s) | 244 |
| BpuEI | CTTGAG | 1 cut(s) | 300 |
| BsaJI | CCNNGG | 1 cut(s) | 221 |
| Bse21I | CCTNAGG | 1 cut(s) | 114 |
| Bse3DI | GCAATG | 2 cut(s) | 92, 97 |
| BseDI | CCNNGG | 1 cut(s) | 221 |
| BseGI | GGATG | 2 cut(s) | 39, 72 |
| BseMI | GCAATG | 2 cut(s) | 92, 97 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BseRI | GAGGAG | 1 cut(s) | 19 |
| BseXI | GCAGC | 3 cut(s) | 38, 60, 154 |
| BseYI | CCCAGC | 1 cut(s) | 54 |
| BshFI | GGCC | 1 cut(s) | 349 |
| BsiHKAI | GWGCWC | 3 cut(s) | 105, 220, 336 |
| BsnI | GGCC | 1 cut(s) | 349 |
| Bsp1286I | GDGCHC | 3 cut(s) | 105, 220, 336 |
| Bsp143I | GATC | 2 cut(s) | 188, 321 |
| BspACI | CCGC | 1 cut(s) | 108 |
| BspANI | GGCC | 1 cut(s) | 349 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BsrBI | CCGCTC | 1 cut(s) | 110 |
| BsrDI | GCAATG | 2 cut(s) | 92, 97 |
| BssECI | CCNNGG | 1 cut(s) | 221 |
| BssMI | GATC | 2 cut(s) | 188, 321 |
| BssT1I | CCWWGG | 1 cut(s) | 221 |
| Bst4CI | ACNGT | 1 cut(s) | 148 |
| Bst6I | CTCTTC | 1 cut(s) | 256 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 302 |
| BstDEI | CTNAG | 1 cut(s) | 114 |
| BstF5I | GGATG | 2 cut(s) | 39, 72 |
| BstH2I | RGCGCY | 1 cut(s) | 281 |
| BstHHI | GCGC | 1 cut(s) | 280 |
| BstKTI | GATC | 2 cut(s) | 191, 324 |
| BstMBI | GATC | 2 cut(s) | 188, 321 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 215, 302, 346 |
| BstNSI | RCATGY | 1 cut(s) | 48 |
| BstV1I | GCAGC | 3 cut(s) | 38, 60, 154 |
| Bsu36I | CCTNAGG | 1 cut(s) | 114 |
| BsuRI | GGCC | 1 cut(s) | 349 |
| BtsCI | GGATG | 2 cut(s) | 39, 72 |
| BtsIMutI | CAGTG | 1 cut(s) | 105 |
| CaiI | CAGNNNCTG | 1 cut(s) | 54 |
| CfoI | GCGC | 1 cut(s) | 280 |
| Csp6I | GTAC | 1 cut(s) | 149 |
| CviAII | CATG | 4 cut(s) | 45, 325, 337, 345 |
| CviJI | RGCY | 4 cut(s) | 51, 218, 257, 349 |
| CviKI_1 | RGCY | 4 cut(s) | 51, 218, 257, 349 |
| CviQI | GTAC | 1 cut(s) | 149 |
| DdeI | CTNAG | 1 cut(s) | 114 |
| DpnI | GATC | 2 cut(s) | 190, 323 |
| DpnII | GATC | 2 cut(s) | 188, 321 |
| EaeI | YGGCCR | 1 cut(s) | 347 |
| Eam1104I | CTCTTC | 1 cut(s) | 256 |
| EarI | CTCTTC | 1 cut(s) | 256 |
| Ecl136II | GAGCTC | 1 cut(s) | 218 |
| Eco130I | CCWWGG | 1 cut(s) | 221 |
| Eco24I | GRGCYC | 1 cut(s) | 220 |
| Eco32I | GATATC | 1 cut(s) | 312 |
| Eco47III | AGCGCT | 1 cut(s) | 279 |
| Eco53kI | GAGCTC | 1 cut(s) | 218 |
| Eco81I | CCTNAGG | 1 cut(s) | 114 |
| EcoICRI | GAGCTC | 1 cut(s) | 218 |
| EcoRI | GAATTC | 1 cut(s) | 155 |
| EcoRV | GATATC | 1 cut(s) | 312 |
| EcoT14I | CCWWGG | 1 cut(s) | 221 |
| EcoT38I | GRGCYC | 1 cut(s) | 220 |
| ErhI | CCWWGG | 1 cut(s) | 221 |
| FaeI | CATG | 4 cut(s) | 48, 328, 340, 348 |
| FaiI | YATR | 8 cut(s) | 26, 46, 122, 308, 326, 338, 346, 364 |
| FatI | CATG | 4 cut(s) | 44, 324, 336, 344 |
| FbaI | TGATCA | 1 cut(s) | 321 |
| Fnu4HI | GCNGC | 3 cut(s) | 49, 52, 168 |
| FokI | GGATG | 2 cut(s) | 46, 59 |
| FriOI | GRGCYC | 1 cut(s) | 220 |
| Fsp4HI | GCNGC | 3 cut(s) | 49, 52, 168 |
| FspBI | CTAG | 1 cut(s) | 131 |
| GlaI | GCGC | 1 cut(s) | 279 |
| GluI | GCNGC | 3 cut(s) | 49, 52, 168 |
| GsaI | CCCAGC | 1 cut(s) | 58 |
| HaeII | RGCGCY | 1 cut(s) | 281 |
| HaeIII | GGCC | 1 cut(s) | 349 |
| HhaI | GCGC | 1 cut(s) | 280 |
| Hin1II | CATG | 4 cut(s) | 48, 328, 340, 348 |
| Hin6I | GCGC | 1 cut(s) | 278 |
| HinP1I | GCGC | 1 cut(s) | 278 |
| HinfI | GANTC | 2 cut(s) | 95, 290 |
| Hpy166II | GTNNAC | 2 cut(s) | 42, 269 |
| Hpy188III | TCNNGA | 1 cut(s) | 113 |
| Hpy8I | GTNNAC | 2 cut(s) | 42, 269 |
| HpyCH4III | ACNGT | 1 cut(s) | 148 |
| HpyCH4V | TGCA | 7 cut(s) | 48, 85, 90, 170, 209, 245, 296 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 215, 302, 346 |
| HpyF3I | CTNAG | 1 cut(s) | 114 |
| Hsp92II | CATG | 4 cut(s) | 48, 328, 340, 348 |
| HspAI | GCGC | 1 cut(s) | 278 |
| Ksp22I | TGATCA | 1 cut(s) | 321 |
| Kzo9I | GATC | 2 cut(s) | 188, 321 |
| LmnI | GCTCC | 3 cut(s) | 115, 215, 223 |
| LpnPI | CCDG | 6 cut(s) | 15, 40, 126, 137, 215, 243 |
| Lsp1109I | GCAGC | 3 cut(s) | 38, 60, 154 |
| LweI | GCATC | 1 cut(s) | 244 |
| MaeI | CTAG | 1 cut(s) | 131 |
| MalI | GATC | 2 cut(s) | 190, 323 |
| MbiI | CCGCTC | 1 cut(s) | 110 |
| MboI | GATC | 2 cut(s) | 188, 321 |
| MboII | GAAGA | 2 cut(s) | 230, 273 |
| MhlI | GDGCHC | 3 cut(s) | 105, 220, 336 |
| MlsI | TGGCCA | 1 cut(s) | 349 |
| MluCI | AATT | 3 cut(s) | 155, 251, 297 |
| MluNI | TGGCCA | 1 cut(s) | 349 |
| MnlI | CCTC | 5 cut(s) | 30, 86, 109, 205, 257 |
| Mox20I | TGGCCA | 1 cut(s) | 349 |
| MscI | TGGCCA | 1 cut(s) | 349 |
| MseI | TTAA | 1 cut(s) | 125 |
| MslI | CAYNNNNRTG | 1 cut(s) | 329 |
| Msp20I | TGGCCA | 1 cut(s) | 349 |
| MspA1I | CMGCKG | 1 cut(s) | 51 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 215, 302, 346 |
| NdeII | GATC | 2 cut(s) | 188, 321 |
| NlaIII | CATG | 4 cut(s) | 48, 328, 340, 348 |
| NspI | RCATGY | 1 cut(s) | 48 |
| PfeI | GAWTC | 2 cut(s) | 95, 290 |
| PkrI | GCNGC | 3 cut(s) | 50, 53, 169 |
| Psp124BI | GAGCTC | 1 cut(s) | 220 |
| PspFI | CCCAGC | 1 cut(s) | 54 |
| PstNI | CAGNNNCTG | 1 cut(s) | 54 |
| PvuII | CAGCTG | 1 cut(s) | 51 |
| RsaI | GTAC | 1 cut(s) | 150 |
| RsaNI | GTAC | 1 cut(s) | 149 |
| RseI | CAYNNNNRTG | 1 cut(s) | 329 |
| SacI | GAGCTC | 1 cut(s) | 220 |
| SaqAI | TTAA | 1 cut(s) | 125 |
| SatI | GCNGC | 3 cut(s) | 49, 52, 168 |
| Sau3AI | GATC | 2 cut(s) | 188, 321 |
| SduI | GDGCHC | 3 cut(s) | 105, 220, 336 |
| SetI | ASST | 6 cut(s) | 41, 53, 120, 220, 227, 268 |
| SfaNI | GCATC | 1 cut(s) | 244 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 329 |
| SmlI | CTYRAG | 1 cut(s) | 315 |
| SmoI | CTYRAG | 1 cut(s) | 315 |
| Sse9I | AATT | 3 cut(s) | 155, 251, 297 |
| SsiI | CCGC | 1 cut(s) | 108 |
| SspMI | CTAG | 1 cut(s) | 131 |
| SstI | GAGCTC | 1 cut(s) | 220 |
| StyI | CCWWGG | 1 cut(s) | 221 |
| TaaI | ACNGT | 1 cut(s) | 148 |
| TasI | AATT | 3 cut(s) | 155, 251, 297 |
| TatI | WGTACW | 1 cut(s) | 148 |
| TfiI | GAWTC | 2 cut(s) | 95, 290 |
| Tru1I | TTAA | 1 cut(s) | 125 |
| Tru9I | TTAA | 1 cut(s) | 125 |
| TscAI | CASTG | 1 cut(s) | 105 |
| TseI | GCWGC | 3 cut(s) | 48, 51, 167 |
| TspDTI | ATGAA | 1 cut(s) | 61 |
| TspRI | CASTG | 1 cut(s) | 105 |
| XapI | RAATTY | 1 cut(s) | 155 |
| XceI | RCATGY | 1 cut(s) | 48 |
| XspI | CTAG | 1 cut(s) | 131 |