Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 30 |
| AccI | GTMKAC | 1 cut(s) | 735 |
| AccII | CGCG | 1 cut(s) | 404 |
| AciI | CCGC | 1 cut(s) | 402 |
| AclWI | GGATC | 6 cut(s) | 74, 267, 335, 527, 654, 765 |
| AcuI | CTGAAG | 1 cut(s) | 542 |
| AcyI | GRCGYC | 1 cut(s) | 31 |
| AfaI | GTAC | 1 cut(s) | 843 |
| AflIII | ACRYGT | 1 cut(s) | 844 |
| AgsI | TTSAA | 3 cut(s) | 160, 247, 565 |
| AluBI | AGCT | 5 cut(s) | 199, 222, 498, 592, 760 |
| AluI | AGCT | 5 cut(s) | 199, 222, 498, 592, 760 |
| Alw21I | GWGCWC | 2 cut(s) | 224, 612 |
| Alw26I | GTCTC | 1 cut(s) | 565 |
| AlwI | GGATC | 6 cut(s) | 74, 267, 335, 527, 654, 765 |
| Ama87I | CYCGRG | 1 cut(s) | 568 |
| AoxI | GGCC | 1 cut(s) | 778 |
| AspLEI | GCGC | 2 cut(s) | 33, 406 |
| AsuC2I | CCSGG | 1 cut(s) | 345 |
| AsuHPI | GGTGA | 2 cut(s) | 29, 526 |
| AsuII | TTCGAA | 1 cut(s) | 600 |
| AvaI | CYCGRG | 1 cut(s) | 568 |
| BanI | GGYRCC | 1 cut(s) | 30 |
| BanII | GRGCYC | 2 cut(s) | 224, 817 |
| BbsI | GAAGAC | 3 cut(s) | 229, 548, 722 |
| Bbv12I | GWGCWC | 2 cut(s) | 224, 612 |
| BccI | CCATC | 4 cut(s) | 248, 323, 479, 860 |
| BcnI | CCSGG | 1 cut(s) | 345 |
| BcoDI | GTCTC | 1 cut(s) | 565 |
| BfaI | CTAG | 1 cut(s) | 132 |
| BfoI | RGCGCY | 1 cut(s) | 34 |
| Bme1390I | CCNGG | 1 cut(s) | 345 |
| BmeT110I | CYCGRG | 1 cut(s) | 568 |
| BmiI | GGNNCC | 1 cut(s) | 32 |
| BmrFI | CCNGG | 1 cut(s) | 345 |
| BpiI | GAAGAC | 3 cut(s) | 229, 548, 722 |
| BpmI | CTGGAG | 2 cut(s) | 80, 501 |
| Bpu14I | TTCGAA | 1 cut(s) | 600 |
| BpuEI | CTTGAG | 1 cut(s) | 839 |
| BpuMI | CCSGG | 1 cut(s) | 345 |
| BsaAI | YACGTR | 2 cut(s) | 663, 845 |
| BsaBI | GATNNNNATC | 1 cut(s) | 258 |
| BsaHI | GRCGYC | 1 cut(s) | 31 |
| BsaJI | CCNNGG | 2 cut(s) | 287, 344 |
| Bse1I | ACTGG | 1 cut(s) | 484 |
| Bse3DI | GCAATG | 1 cut(s) | 673 |
| Bse8I | GATNNNNATC | 1 cut(s) | 258 |
| BseDI | CCNNGG | 2 cut(s) | 287, 344 |
| BseGI | GGATG | 3 cut(s) | 82, 880, 889 |
| BseJI | GATNNNNATC | 1 cut(s) | 258 |
| BseMI | GCAATG | 1 cut(s) | 673 |
| BseMII | CTCAG | 3 cut(s) | 90, 530, 684 |
| BseNI | ACTGG | 1 cut(s) | 484 |
| BseRI | GAGGAG | 1 cut(s) | 209 |
| Bsh1236I | CGCG | 1 cut(s) | 404 |
| BshFI | GGCC | 1 cut(s) | 780 |
| BshNI | GGYRCC | 1 cut(s) | 30 |
| BsiHKAI | GWGCWC | 2 cut(s) | 224, 612 |
| BsiHKCI | CYCGRG | 1 cut(s) | 568 |
| BsiSI | CCGG | 1 cut(s) | 344 |
| BsmAI | GTCTC | 1 cut(s) | 565 |
| BsnI | GGCC | 1 cut(s) | 780 |
| BsoBI | CYCGRG | 1 cut(s) | 568 |
| Bsp119I | TTCGAA | 1 cut(s) | 600 |
| Bsp1286I | GDGCHC | 3 cut(s) | 224, 612, 817 |
| Bsp143I | GATC | 8 cut(s) | 55, 79, 259, 340, 532, 646, 770, 822 |
| BspACI | CCGC | 1 cut(s) | 402 |
| BspANI | GGCC | 1 cut(s) | 780 |
| BspCNI | CTCAG | 3 cut(s) | 91, 531, 685 |
| BspFNI | CGCG | 1 cut(s) | 404 |
| BspLI | GGNNCC | 1 cut(s) | 32 |
| BspPI | GGATC | 6 cut(s) | 74, 267, 335, 527, 654, 765 |
| BspT104I | TTCGAA | 1 cut(s) | 600 |
| BspT107I | GGYRCC | 1 cut(s) | 30 |
| BsrDI | GCAATG | 1 cut(s) | 673 |
| BsrI | ACTGG | 1 cut(s) | 484 |
| BssECI | CCNNGG | 2 cut(s) | 287, 344 |
| BssMI | GATC | 8 cut(s) | 55, 79, 259, 340, 532, 646, 770, 822 |
| BssNI | GRCGYC | 1 cut(s) | 31 |
| Bst4CI | ACNGT | 4 cut(s) | 73, 582, 707, 829 |
| BstACI | GRCGYC | 1 cut(s) | 31 |
| BstBAI | YACGTR | 2 cut(s) | 663, 845 |
| BstBI | TTCGAA | 1 cut(s) | 600 |
| BstC8I | GCNNGC | 3 cut(s) | 312, 551, 590 |
| BstDEI | CTNAG | 3 cut(s) | 99, 539, 693 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstF5I | GGATG | 3 cut(s) | 82, 880, 889 |
| BstFNI | CGCG | 1 cut(s) | 404 |
| BstH2I | RGCGCY | 1 cut(s) | 34 |
| BstHHI | GCGC | 2 cut(s) | 33, 406 |
| BstKTI | GATC | 8 cut(s) | 58, 82, 262, 343, 535, 649, 773, 825 |
| BstMAI | GTCTC | 1 cut(s) | 565 |
| BstMBI | GATC | 8 cut(s) | 55, 79, 259, 340, 532, 646, 770, 822 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 403, 766 |
| BstNSI | RCATGY | 1 cut(s) | 553 |
| BstSCI | CCNGG | 1 cut(s) | 343 |
| BstUI | CGCG | 1 cut(s) | 404 |
| BstV2I | GAAGAC | 3 cut(s) | 229, 548, 722 |
| BsuRI | GGCC | 1 cut(s) | 780 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtsCI | GGATG | 3 cut(s) | 82, 880, 889 |
| BtsIMutI | CAGTG | 2 cut(s) | 78, 825 |
| Cac8I | GCNNGC | 3 cut(s) | 312, 551, 590 |
| CfoI | GCGC | 2 cut(s) | 33, 406 |
| CseI | GACGC | 2 cut(s) | 542, 727 |
| Csp6I | GTAC | 1 cut(s) | 842 |
| CviAII | CATG | 4 cut(s) | 421, 550, 650, 764 |
| CviQI | GTAC | 1 cut(s) | 842 |
| DdeI | CTNAG | 3 cut(s) | 99, 539, 693 |
| DinI | GGCGCC | 1 cut(s) | 32 |
| DpnI | GATC | 8 cut(s) | 57, 81, 261, 342, 534, 648, 772, 824 |
| DpnII | GATC | 8 cut(s) | 55, 79, 259, 340, 532, 646, 770, 822 |
| Ecl136II | GAGCTC | 1 cut(s) | 222 |
| Eco24I | GRGCYC | 2 cut(s) | 224, 817 |
| Eco53kI | GAGCTC | 1 cut(s) | 222 |
| Eco57I | CTGAAG | 1 cut(s) | 542 |
| Eco88I | CYCGRG | 1 cut(s) | 568 |
| EcoICRI | GAGCTC | 1 cut(s) | 222 |
| EcoT38I | GRGCYC | 2 cut(s) | 224, 817 |
| EgeI | GGCGCC | 1 cut(s) | 32 |
| EheI | GGCGCC | 1 cut(s) | 32 |
| FaeI | CATG | 4 cut(s) | 424, 553, 653, 767 |
| FatI | CATG | 4 cut(s) | 420, 549, 649, 763 |
| FblI | GTMKAC | 1 cut(s) | 735 |
| FokI | GGATG | 3 cut(s) | 89, 887, 896 |
| FriOI | GRGCYC | 2 cut(s) | 224, 817 |
| FspBI | CTAG | 1 cut(s) | 132 |
| GlaI | GCGC | 2 cut(s) | 32, 405 |
| GsuI | CTGGAG | 2 cut(s) | 80, 501 |
| HaeII | RGCGCY | 1 cut(s) | 34 |
| HaeIII | GGCC | 1 cut(s) | 780 |
| HapII | CCGG | 1 cut(s) | 344 |
| HgaI | GACGC | 2 cut(s) | 542, 727 |
| HhaI | GCGC | 2 cut(s) | 33, 406 |
| Hin1I | GRCGYC | 1 cut(s) | 31 |
| Hin1II | CATG | 4 cut(s) | 424, 553, 653, 767 |
| Hin6I | GCGC | 2 cut(s) | 31, 404 |
| HinP1I | GCGC | 2 cut(s) | 31, 404 |
| HincII | GTYRAC | 4 cut(s) | 186, 355, 411, 462 |
| HindII | GTYRAC | 4 cut(s) | 186, 355, 411, 462 |
| HinfI | GANTC | 3 cut(s) | 152, 264, 467 |
| HpaII | CCGG | 1 cut(s) | 344 |
| HphI | GGTGA | 2 cut(s) | 29, 526 |
| Hpy166II | GTNNAC | 6 cut(s) | 186, 355, 411, 462, 638, 736 |
| Hpy188I | TCNGA | 5 cut(s) | 226, 253, 269, 532, 540 |
| Hpy188III | TCNNGA | 2 cut(s) | 44, 59 |
| Hpy8I | GTNNAC | 6 cut(s) | 186, 355, 411, 462, 638, 736 |
| Hpy99I | CGWCG | 2 cut(s) | 53, 56 |
| HpyAV | CCTTC | 5 cut(s) | 253, 408, 420, 674, 678 |
| HpyCH4III | ACNGT | 4 cut(s) | 73, 582, 707, 829 |
| HpyCH4IV | ACGT | 3 cut(s) | 147, 662, 844 |
| HpyCH4V | TGCA | 2 cut(s) | 666, 671 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 403, 766 |
| HpyF3I | CTNAG | 3 cut(s) | 99, 539, 693 |
| HpySE526I | ACGT | 3 cut(s) | 147, 662, 844 |
| Hsp92I | GRCGYC | 1 cut(s) | 31 |
| Hsp92II | CATG | 4 cut(s) | 424, 553, 653, 767 |
| HspAI | GCGC | 2 cut(s) | 31, 404 |
| KasI | GGCGCC | 1 cut(s) | 30 |
| Kzo9I | GATC | 8 cut(s) | 55, 79, 259, 340, 532, 646, 770, 822 |
| LmnI | GCTCC | 3 cut(s) | 196, 226, 495 |
| LpnPI | CCDG | 6 cut(s) | 29, 44, 101, 296, 357, 465 |
| MaeI | CTAG | 1 cut(s) | 132 |
| MaeII | ACGT | 3 cut(s) | 147, 662, 844 |
| MaeIII | GTNAC | 1 cut(s) | 17 |
| MalI | GATC | 8 cut(s) | 57, 81, 261, 342, 534, 648, 772, 824 |
| MboI | GATC | 8 cut(s) | 55, 79, 259, 340, 532, 646, 770, 822 |
| MboII | GAAGA | 6 cut(s) | 151, 187, 229, 548, 727, 875 |
| MfeI | CAATTG | 1 cut(s) | 741 |
| MhlI | GDGCHC | 3 cut(s) | 224, 612, 817 |
| MluCI | AATT | 4 cut(s) | 93, 301, 432, 741 |
| Mly113I | GGCGCC | 1 cut(s) | 31 |
| MlyI | GAGTC | 1 cut(s) | 258 |
| MseI | TTAA | 4 cut(s) | 92, 144, 380, 584 |
| MslI | CAYNNNNRTG | 2 cut(s) | 71, 654 |
| MspI | CCGG | 1 cut(s) | 344 |
| MspR9I | CCNGG | 1 cut(s) | 345 |
| MunI | CAATTG | 1 cut(s) | 741 |
| MvnI | CGCG | 1 cut(s) | 404 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 403, 766 |
| NarI | GGCGCC | 1 cut(s) | 31 |
| NciI | CCSGG | 1 cut(s) | 345 |
| NdeII | GATC | 8 cut(s) | 55, 79, 259, 340, 532, 646, 770, 822 |
| NlaIII | CATG | 4 cut(s) | 424, 553, 653, 767 |
| NlaIV | GGNNCC | 1 cut(s) | 32 |
| NmeAIII | GCCGAG | 1 cut(s) | 7 |
| NmuCI | GTSAC | 1 cut(s) | 17 |
| NspI | RCATGY | 1 cut(s) | 553 |
| NspV | TTCGAA | 1 cut(s) | 600 |
| PaeI | GCATGC | 1 cut(s) | 553 |
| PfeI | GAWTC | 2 cut(s) | 152, 467 |
| PflFI | GACNNNGTC | 1 cut(s) | 721 |
| PleI | GAGTC | 1 cut(s) | 258 |
| PluTI | GGCGCC | 1 cut(s) | 34 |
| PpsI | GAGTC | 1 cut(s) | 258 |
| Ppu21I | YACGTR | 2 cut(s) | 663, 845 |
| Psp124BI | GAGCTC | 1 cut(s) | 224 |
| PspN4I | GGNNCC | 1 cut(s) | 32 |
| PsyI | GACNNNGTC | 1 cut(s) | 721 |
| RsaI | GTAC | 1 cut(s) | 843 |
| RsaNI | GTAC | 1 cut(s) | 842 |
| RseI | CAYNNNNRTG | 2 cut(s) | 71, 654 |
| SacI | GAGCTC | 1 cut(s) | 224 |
| SaqAI | TTAA | 4 cut(s) | 92, 144, 380, 584 |
| Sau3AI | GATC | 8 cut(s) | 55, 79, 259, 340, 532, 646, 770, 822 |
| SchI | GAGTC | 1 cut(s) | 258 |
| ScrFI | CCNGG | 1 cut(s) | 345 |
| SduI | GDGCHC | 3 cut(s) | 224, 612, 817 |
| SfoI | GGCGCC | 1 cut(s) | 32 |
| SfuI | TTCGAA | 1 cut(s) | 600 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 71, 654 |
| SmlI | CTYRAG | 1 cut(s) | 818 |
| SmoI | CTYRAG | 1 cut(s) | 818 |
| SphI | GCATGC | 1 cut(s) | 553 |
| Sse9I | AATT | 4 cut(s) | 93, 301, 432, 741 |
| SsiI | CCGC | 1 cut(s) | 402 |
| SspDI | GGCGCC | 1 cut(s) | 30 |
| SspMI | CTAG | 1 cut(s) | 132 |
| SstI | GAGCTC | 1 cut(s) | 224 |
| StyD4I | CCNGG | 1 cut(s) | 343 |
| TaaI | ACNGT | 4 cut(s) | 73, 582, 707, 829 |
| TaiI | ACGT | 3 cut(s) | 150, 665, 847 |
| TaqI | TCGA | 3 cut(s) | 262, 339, 600 |
| TasI | AATT | 4 cut(s) | 93, 301, 432, 741 |
| TfiI | GAWTC | 2 cut(s) | 152, 467 |
| Tru1I | TTAA | 4 cut(s) | 92, 144, 380, 584 |
| Tru9I | TTAA | 4 cut(s) | 92, 144, 380, 584 |
| TscAI | CASTG | 2 cut(s) | 78, 832 |
| TseFI | GTSAC | 1 cut(s) | 17 |
| Tsp45I | GTSAC | 1 cut(s) | 17 |
| TspDTI | ATGAA | 1 cut(s) | 900 |
| TspGWI | ACGGA | 3 cut(s) | 178, 276, 479 |
| TspRI | CASTG | 2 cut(s) | 78, 832 |
| Tth111I | GACNNNGTC | 1 cut(s) | 721 |
| XceI | RCATGY | 1 cut(s) | 553 |
| XmiI | GTMKAC | 1 cut(s) | 735 |
| XspI | CTAG | 1 cut(s) | 132 |