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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 562 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 573 |
| AccII | CGCG | 1 cut(s) | 585 |
| AciI | CCGC | 2 cut(s) | 81, 657 |
| AcsI | RAATTY | 1 cut(s) | 64 |
| AcuI | CTGAAG | 2 cut(s) | 178, 381 |
| AcyI | GRCGYC | 1 cut(s) | 254 |
| AfaI | GTAC | 1 cut(s) | 142 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 411, 573, 623 |
| AgsI | TTSAA | 2 cut(s) | 250, 666 |
| AjnI | CCWGG | 3 cut(s) | 293, 501, 616 |
| Alw26I | GTCTC | 1 cut(s) | 464 |
| AoxI | GGCC | 2 cut(s) | 614, 637 |
| ApoI | RAATTY | 1 cut(s) | 64 |
| AseI | ATTAAT | 1 cut(s) | 18 |
| AspLEI | GCGC | 2 cut(s) | 411, 587 |
| AspS9I | GGNCC | 6 cut(s) | 91, 243, 325, 555, 614, 637 |
| AsuHPI | GGTGA | 1 cut(s) | 494 |
| AsuII | TTCGAA | 2 cut(s) | 13, 518 |
| AvaII | GGWCC | 4 cut(s) | 91, 243, 325, 555 |
| BaeGI | GKGCMC | 1 cut(s) | 466 |
| BanII | GRGCYC | 1 cut(s) | 228 |
| BauI | CACGAG | 1 cut(s) | 336 |
| BccI | CCATC | 2 cut(s) | 304, 424 |
| BciT130I | CCWGG | 3 cut(s) | 295, 503, 618 |
| BcoDI | GTCTC | 1 cut(s) | 464 |
| BfoI | RGCGCY | 1 cut(s) | 412 |
| Bme1390I | CCNGG | 3 cut(s) | 295, 503, 618 |
| Bme18I | GGWCC | 4 cut(s) | 91, 243, 325, 555 |
| BmgT120I | GGNCC | 6 cut(s) | 91, 243, 325, 555, 614, 637 |
| BmiI | GGNNCC | 1 cut(s) | 556 |
| BmrFI | CCNGG | 3 cut(s) | 295, 503, 618 |
| Bpu14I | TTCGAA | 2 cut(s) | 13, 518 |
| BpuEI | CTTGAG | 1 cut(s) | 187 |
| BsaHI | GRCGYC | 1 cut(s) | 254 |
| BsaJI | CCNNGG | 2 cut(s) | 294, 502 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 411, 573, 623 |
| Bse1I | ACTGG | 1 cut(s) | 151 |
| BseBI | CCWGG | 3 cut(s) | 295, 503, 618 |
| BseDI | CCNNGG | 2 cut(s) | 294, 502 |
| BseGI | GGATG | 1 cut(s) | 388 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 411, 573, 623 |
| BseNI | ACTGG | 1 cut(s) | 151 |
| BseSI | GKGCMC | 1 cut(s) | 466 |
| BseYI | CCCAGC | 1 cut(s) | 437 |
| Bsh1236I | CGCG | 1 cut(s) | 585 |
| BshFI | GGCC | 2 cut(s) | 616, 639 |
| BsiSI | CCGG | 1 cut(s) | 412 |
| BslFI | GGGAC | 3 cut(s) | 457, 568, 705 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 411, 573, 623 |
| BsmAI | GTCTC | 1 cut(s) | 464 |
| BsmFI | GGGAC | 3 cut(s) | 457, 568, 705 |
| BsnI | GGCC | 2 cut(s) | 616, 639 |
| Bsp119I | TTCGAA | 2 cut(s) | 13, 518 |
| Bsp1286I | GDGCHC | 2 cut(s) | 228, 466 |
| BspACI | CCGC | 2 cut(s) | 81, 657 |
| BspANI | GGCC | 2 cut(s) | 616, 639 |
| BspFNI | CGCG | 1 cut(s) | 585 |
| BspLI | GGNNCC | 1 cut(s) | 556 |
| BspT104I | TTCGAA | 2 cut(s) | 13, 518 |
| BsrI | ACTGG | 1 cut(s) | 151 |
| BssECI | CCNNGG | 2 cut(s) | 294, 502 |
| BssNI | GRCGYC | 1 cut(s) | 254 |
| BssSI | CACGAG | 1 cut(s) | 336 |
| Bst2BI | CACGAG | 1 cut(s) | 336 |
| Bst2UI | CCWGG | 3 cut(s) | 295, 503, 618 |
| Bst4CI | ACNGT | 1 cut(s) | 286 |
| Bst6I | CTCTTC | 1 cut(s) | 706 |
| BstACI | GRCGYC | 1 cut(s) | 254 |
| BstBI | TTCGAA | 2 cut(s) | 13, 518 |
| BstC8I | GCNNGC | 1 cut(s) | 583 |
| BstF5I | GGATG | 1 cut(s) | 388 |
| BstFNI | CGCG | 1 cut(s) | 585 |
| BstH2I | RGCGCY | 1 cut(s) | 412 |
| BstHHI | GCGC | 2 cut(s) | 411, 587 |
| BstMAI | GTCTC | 1 cut(s) | 464 |
| BstNI | CCWGG | 3 cut(s) | 295, 503, 618 |
| BstSCI | CCNGG | 3 cut(s) | 293, 501, 616 |
| BstSLI | GKGCMC | 1 cut(s) | 466 |
| BstUI | CGCG | 1 cut(s) | 585 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 551 |
| BsuRI | GGCC | 2 cut(s) | 616, 639 |
| BtsCI | GGATG | 1 cut(s) | 388 |
| BtsIMutI | CAGTG | 1 cut(s) | 291 |
| Cac8I | GCNNGC | 1 cut(s) | 583 |
| CfoI | GCGC | 2 cut(s) | 411, 587 |
| Cfr13I | GGNCC | 6 cut(s) | 91, 243, 325, 555, 614, 637 |
| CseI | GACGC | 1 cut(s) | 243 |
| Csp6I | GTAC | 1 cut(s) | 141 |
| CviAII | CATG | 6 cut(s) | 95, 179, 229, 240, 366, 467 |
| CviJI | RGCY | 8 cut(s) | 58, 226, 318, 437, 515, 616, 639, 669 |
| CviKI_1 | RGCY | 8 cut(s) | 58, 226, 318, 437, 515, 616, 639, 669 |
| CviQI | GTAC | 1 cut(s) | 141 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 562 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 562 |
| Eam1104I | CTCTTC | 1 cut(s) | 706 |
| EarI | CTCTTC | 1 cut(s) | 706 |
| Eco24I | GRGCYC | 1 cut(s) | 228 |
| Eco32I | GATATC | 1 cut(s) | 609 |
| Eco47I | GGWCC | 4 cut(s) | 91, 243, 325, 555 |
| Eco57I | CTGAAG | 2 cut(s) | 178, 381 |
| EcoRII | CCWGG | 3 cut(s) | 293, 501, 616 |
| EcoRV | GATATC | 1 cut(s) | 609 |
| EcoT22I | ATGCAT | 1 cut(s) | 371 |
| EcoT38I | GRGCYC | 1 cut(s) | 228 |
| FaeI | CATG | 6 cut(s) | 98, 182, 232, 243, 369, 470 |
| FaqI | GGGAC | 3 cut(s) | 457, 568, 705 |
| FatI | CATG | 6 cut(s) | 94, 178, 228, 239, 365, 466 |
| FauI | CCCGC | 1 cut(s) | 650 |
| FokI | GGATG | 1 cut(s) | 395 |
| FriOI | GRGCYC | 1 cut(s) | 228 |
| GlaI | GCGC | 2 cut(s) | 410, 586 |
| GsaI | CCCAGC | 1 cut(s) | 441 |
| HaeII | RGCGCY | 1 cut(s) | 412 |
| HaeIII | GGCC | 2 cut(s) | 616, 639 |
| HapII | CCGG | 1 cut(s) | 412 |
| HgaI | GACGC | 1 cut(s) | 243 |
| HhaI | GCGC | 2 cut(s) | 411, 587 |
| Hin1I | GRCGYC | 1 cut(s) | 254 |
| Hin1II | CATG | 6 cut(s) | 98, 182, 232, 243, 369, 470 |
| Hin6I | GCGC | 2 cut(s) | 409, 585 |
| HinP1I | GCGC | 2 cut(s) | 409, 585 |
| HinfI | GANTC | 5 cut(s) | 10, 136, 332, 344, 593 |
| HpaII | CCGG | 1 cut(s) | 412 |
| HphI | GGTGA | 1 cut(s) | 494 |
| Hpy166II | GTNNAC | 1 cut(s) | 685 |
| Hpy188I | TCNGA | 7 cut(s) | 158, 197, 259, 281, 349, 499, 598 |
| Hpy188III | TCNNGA | 2 cut(s) | 7, 166 |
| Hpy8I | GTNNAC | 1 cut(s) | 685 |
| Hpy99I | CGWCG | 1 cut(s) | 259 |
| HpyAV | CCTTC | 3 cut(s) | 176, 244, 530 |
| HpyCH4III | ACNGT | 1 cut(s) | 286 |
| HpyCH4V | TGCA | 3 cut(s) | 114, 369, 722 |
| Hsp92I | GRCGYC | 1 cut(s) | 254 |
| Hsp92II | CATG | 6 cut(s) | 98, 182, 232, 243, 369, 470 |
| HspAI | GCGC | 2 cut(s) | 409, 585 |
| MaeIII | GTNAC | 2 cut(s) | 391, 400 |
| MboII | GAAGA | 6 cut(s) | 145, 184, 311, 538, 545, 723 |
| MhlI | GDGCHC | 2 cut(s) | 228, 466 |
| MluCI | AATT | 3 cut(s) | 15, 64, 417 |
| MlyI | GAGTC | 1 cut(s) | 602 |
| MmeI | TCCRAC | 3 cut(s) | 237, 259, 568 |
| MnlI | CCTC | 5 cut(s) | 48, 162, 373, 415, 694 |
| Mph1103I | ATGCAT | 1 cut(s) | 371 |
| MseI | TTAA | 1 cut(s) | 18 |
| MspI | CCGG | 1 cut(s) | 412 |
| MspR9I | CCNGG | 3 cut(s) | 295, 503, 618 |
| MvaI | CCWGG | 3 cut(s) | 295, 503, 618 |
| MvnI | CGCG | 1 cut(s) | 585 |
| NlaIII | CATG | 6 cut(s) | 98, 182, 232, 243, 369, 470 |
| NlaIV | GGNNCC | 1 cut(s) | 556 |
| NmuCI | GTSAC | 1 cut(s) | 391 |
| NsiI | ATGCAT | 1 cut(s) | 371 |
| NspV | TTCGAA | 2 cut(s) | 13, 518 |
| PfeI | GAWTC | 4 cut(s) | 10, 136, 332, 344 |
| PflFI | GACNNNGTC | 2 cut(s) | 241, 263 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 573 |
| PleI | GAGTC | 1 cut(s) | 601 |
| PpsI | GAGTC | 1 cut(s) | 601 |
| PshBI | ATTAAT | 1 cut(s) | 18 |
| Psp6I | CCWGG | 3 cut(s) | 293, 501, 616 |
| PspFI | CCCAGC | 1 cut(s) | 437 |
| PspGI | CCWGG | 3 cut(s) | 293, 501, 616 |
| PspN4I | GGNNCC | 1 cut(s) | 556 |
| PspPI | GGNCC | 6 cut(s) | 91, 243, 325, 555, 614, 637 |
| PsyI | GACNNNGTC | 2 cut(s) | 241, 263 |
| RsaI | GTAC | 1 cut(s) | 142 |
| RsaNI | GTAC | 1 cut(s) | 141 |
| SaqAI | TTAA | 1 cut(s) | 18 |
| Sau96I | GGNCC | 6 cut(s) | 91, 243, 325, 555, 614, 637 |
| SchI | GAGTC | 1 cut(s) | 602 |
| ScrFI | CCNGG | 3 cut(s) | 295, 503, 618 |
| SduI | GDGCHC | 2 cut(s) | 228, 466 |
| SetI | ASST | 5 cut(s) | 44, 504, 541, 550, 682 |
| SfuI | TTCGAA | 2 cut(s) | 13, 518 |
| SinI | GGWCC | 4 cut(s) | 91, 243, 325, 555 |
| SmlI | CTYRAG | 2 cut(s) | 5, 166 |
| SmoI | CTYRAG | 2 cut(s) | 5, 166 |
| Sse9I | AATT | 3 cut(s) | 15, 64, 417 |
| SsiI | CCGC | 2 cut(s) | 81, 657 |
| StyD4I | CCNGG | 3 cut(s) | 293, 501, 616 |
| TaaI | ACNGT | 1 cut(s) | 286 |
| TaqI | TCGA | 4 cut(s) | 13, 236, 267, 518 |
| TasI | AATT | 3 cut(s) | 15, 64, 417 |
| TfiI | GAWTC | 4 cut(s) | 10, 136, 332, 344 |
| Tru1I | TTAA | 1 cut(s) | 18 |
| Tru9I | TTAA | 1 cut(s) | 18 |
| TscAI | CASTG | 1 cut(s) | 291 |
| TseFI | GTSAC | 1 cut(s) | 391 |
| Tsp45I | GTSAC | 1 cut(s) | 391 |
| TspDTI | ATGAA | 2 cut(s) | 195, 245 |
| TspRI | CASTG | 1 cut(s) | 291 |
| Tth111I | GACNNNGTC | 2 cut(s) | 241, 263 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 573 |
| VpaK11BI | GGWCC | 4 cut(s) | 91, 243, 325, 555 |
| VspI | ATTAAT | 1 cut(s) | 18 |
| XapI | RAATTY | 1 cut(s) | 64 |
| Zsp2I | ATGCAT | 1 cut(s) | 371 |