Pseudouridine synthase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TruD | PF01142 | 2 - 119 | 5.6e-27 | tRNA pseudouridine synthase D (TruD) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 38 |
| AccB1I | GGYRCC | 2 cut(s) | 38, 952 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 187 |
| AciI | CCGC | 7 cut(s) | 35, 659, 689, 692, 769, 841, 1120 |
| AclWI | GGATC | 3 cut(s) | 238, 907, 1064 |
| AcoI | YGGCCR | 2 cut(s) | 178, 427 |
| AcsI | RAATTY | 1 cut(s) | 809 |
| AcuI | CTGAAG | 3 cut(s) | 255, 426, 717 |
| AcyI | GRCGYC | 1 cut(s) | 953 |
| AfaI | GTAC | 2 cut(s) | 40, 461 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 187, 610, 737, 787, 837, 935 |
| AgsI | TTSAA | 5 cut(s) | 63, 526, 722, 814, 827 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 672 |
| AjnI | CCWGG | 2 cut(s) | 186, 1122 |
| AluBI | AGCT | 4 cut(s) | 107, 344, 387, 424 |
| AluI | AGCT | 4 cut(s) | 107, 344, 387, 424 |
| Alw21I | GWGCWC | 1 cut(s) | 426 |
| Alw26I | GTCTC | 1 cut(s) | 1055 |
| AlwI | GGATC | 3 cut(s) | 238, 907, 1064 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 233 |
| AoxI | GGCC | 5 cut(s) | 178, 427, 661, 1019, 1117 |
| ApeKI | GCWGC | 2 cut(s) | 107, 375 |
| ApoI | RAATTY | 1 cut(s) | 809 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 316, 809 |
| Asp718I | GGTACC | 1 cut(s) | 38 |
| AspLEI | GCGC | 1 cut(s) | 955 |
| AspS9I | GGNCC | 7 cut(s) | 414, 476, 661, 740, 924, 1019, 1117 |
| AsuHPI | GGTGA | 2 cut(s) | 991, 1103 |
| AvaII | GGWCC | 4 cut(s) | 414, 476, 740, 924 |
| AxyI | CCTNAGG | 1 cut(s) | 265 |
| BalI | TGGCCA | 1 cut(s) | 180 |
| BanI | GGYRCC | 2 cut(s) | 38, 952 |
| BanII | GRGCYC | 2 cut(s) | 426, 1004 |
| BbsI | GAAGAC | 1 cut(s) | 854 |
| Bbv12I | GWGCWC | 1 cut(s) | 426 |
| BbvCI | CCTCAGC | 1 cut(s) | 1145 |
| BbvI | GCAGC | 2 cut(s) | 94, 387 |
| BccI | CCATC | 6 cut(s) | 365, 385, 790, 878, 1025, 1063 |
| BceAI | ACGGC | 2 cut(s) | 549, 734 |
| BciT130I | CCWGG | 2 cut(s) | 188, 1124 |
| BciVI | GTATCC | 1 cut(s) | 611 |
| BclI | TGATCA | 1 cut(s) | 855 |
| BcoDI | GTCTC | 1 cut(s) | 1055 |
| BfmI | CTRYAG | 1 cut(s) | 919 |
| BfoI | RGCGCY | 1 cut(s) | 956 |
| BfuI | GTATCC | 1 cut(s) | 611 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1125 |
| BisI | GCNGC | 5 cut(s) | 108, 376, 690, 693, 1120 |
| BlsI | GCNGC | 5 cut(s) | 109, 377, 691, 694, 1121 |
| Bme1390I | CCNGG | 2 cut(s) | 188, 1124 |
| Bme18I | GGWCC | 4 cut(s) | 414, 476, 740, 924 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 672 |
| BmgT120I | GGNCC | 7 cut(s) | 414, 476, 661, 740, 924, 1019, 1117 |
| BmiI | GGNNCC | 6 cut(s) | 40, 741, 742, 926, 954, 1118 |
| BmrFI | CCNGG | 2 cut(s) | 188, 1124 |
| BmrI | ACTGGG | 1 cut(s) | 655 |
| BmsI | GCATC | 1 cut(s) | 260 |
| BmuI | ACTGGG | 1 cut(s) | 655 |
| BpiI | GAAGAC | 1 cut(s) | 854 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 986, 1018 |
| BpmI | CTGGAG | 1 cut(s) | 1125 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1145 |
| BsaBI | GATNNNNATC | 1 cut(s) | 131 |
| BsaHI | GRCGYC | 1 cut(s) | 953 |
| BsaJI | CCNNGG | 4 cut(s) | 17, 42, 187, 1123 |
| BsaWI | WCCGGW | 2 cut(s) | 590, 1088 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 504, 534 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 187, 610, 737, 787, 837, 935 |
| Bse1I | ACTGG | 3 cut(s) | 372, 650, 1108 |
| Bse21I | CCTNAGG | 1 cut(s) | 265 |
| Bse3DI | GCAATG | 1 cut(s) | 744 |
| Bse8I | GATNNNNATC | 1 cut(s) | 131 |
| BseBI | CCWGG | 2 cut(s) | 188, 1124 |
| BseDI | CCNNGG | 4 cut(s) | 17, 42, 187, 1123 |
| BseGI | GGATG | 2 cut(s) | 376, 889 |
| BseJI | GATNNNNATC | 1 cut(s) | 131 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 187, 610, 737, 787, 837, 935 |
| BseMI | GCAATG | 1 cut(s) | 744 |
| BseMII | CTCAG | 1 cut(s) | 1136 |
| BseNI | ACTGG | 3 cut(s) | 372, 650, 1108 |
| BseRI | GAGGAG | 3 cut(s) | 525, 1007, 1025 |
| BseXI | GCAGC | 2 cut(s) | 94, 387 |
| BsgI | GTGCAG | 1 cut(s) | 653 |
| Bsh1285I | CGRYCG | 2 cut(s) | 363, 382 |
| BshFI | GGCC | 5 cut(s) | 180, 429, 663, 1021, 1119 |
| BshNI | GGYRCC | 2 cut(s) | 38, 952 |
| BsiEI | CGRYCG | 2 cut(s) | 363, 382 |
| BsiHKAI | GWGCWC | 1 cut(s) | 426 |
| BsiSI | CCGG | 5 cut(s) | 591, 800, 956, 1022, 1089 |
| BslFI | GGGAC | 2 cut(s) | 474, 753 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 187, 610, 737, 787, 837, 935 |
| BsmAI | GTCTC | 1 cut(s) | 1055 |
| BsmFI | GGGAC | 2 cut(s) | 474, 753 |
| BsnI | GGCC | 5 cut(s) | 180, 429, 663, 1021, 1119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 426, 1004 |
| Bsp143I | GATC | 7 cut(s) | 243, 360, 379, 445, 855, 899, 1056 |
| BspACI | CCGC | 7 cut(s) | 35, 659, 689, 692, 769, 841, 1120 |
| BspANI | GGCC | 5 cut(s) | 180, 429, 663, 1021, 1119 |
| BspCNI | CTCAG | 1 cut(s) | 1137 |
| BspLI | GGNNCC | 6 cut(s) | 40, 741, 742, 926, 954, 1118 |
| BspPI | GGATC | 3 cut(s) | 238, 907, 1064 |
| BspT107I | GGYRCC | 2 cut(s) | 38, 952 |
| BsrDI | GCAATG | 1 cut(s) | 744 |
| BsrI | ACTGG | 3 cut(s) | 372, 650, 1108 |
| BssECI | CCNNGG | 4 cut(s) | 17, 42, 187, 1123 |
| BssMI | GATC | 7 cut(s) | 243, 360, 379, 445, 855, 899, 1056 |
| BssNI | GRCGYC | 1 cut(s) | 953 |
| BssT1I | CCWWGG | 2 cut(s) | 17, 42 |
| Bst2UI | CCWGG | 2 cut(s) | 188, 1124 |
| Bst4CI | ACNGT | 6 cut(s) | 79, 197, 409, 537, 670, 853 |
| Bst6I | CTCTTC | 2 cut(s) | 521, 693 |
| BstACI | GRCGYC | 1 cut(s) | 953 |
| BstC8I | GCNNGC | 1 cut(s) | 661 |
| BstDEI | CTNAG | 2 cut(s) | 265, 1145 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 608 |
| BstF5I | GGATG | 2 cut(s) | 376, 889 |
| BstH2I | RGCGCY | 1 cut(s) | 956 |
| BstHHI | GCGC | 1 cut(s) | 955 |
| BstKTI | GATC | 7 cut(s) | 246, 363, 382, 448, 858, 902, 1059 |
| BstMAI | GTCTC | 1 cut(s) | 1055 |
| BstMBI | GATC | 7 cut(s) | 243, 360, 379, 445, 855, 899, 1056 |
| BstMCI | CGRYCG | 2 cut(s) | 363, 382 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 150, 384, 766, 1125 |
| BstNI | CCWGG | 2 cut(s) | 188, 1124 |
| BstSCI | CCNGG | 2 cut(s) | 186, 1122 |
| BstSFI | CTRYAG | 1 cut(s) | 919 |
| BstV1I | GCAGC | 2 cut(s) | 94, 387 |
| BstV2I | GAAGAC | 1 cut(s) | 854 |
| BstX2I | RGATCY | 1 cut(s) | 899 |
| BstYI | RGATCY | 1 cut(s) | 899 |
| Bsu36I | CCTNAGG | 1 cut(s) | 265 |
| BsuI | GTATCC | 1 cut(s) | 611 |
| BsuRI | GGCC | 5 cut(s) | 180, 429, 663, 1021, 1119 |
| BtgZI | GCGATG | 1 cut(s) | 1082 |
| BtsCI | GGATG | 2 cut(s) | 376, 889 |
| BtsIMutI | CAGTG | 2 cut(s) | 643, 858 |
| Cac8I | GCNNGC | 1 cut(s) | 661 |
| CaiI | CAGNNNCTG | 1 cut(s) | 233 |
| CfoI | GCGC | 1 cut(s) | 955 |
| Cfr13I | GGNCC | 7 cut(s) | 414, 476, 661, 740, 924, 1019, 1117 |
| CseI | GACGC | 1 cut(s) | 662 |
| Csp6I | GTAC | 2 cut(s) | 39, 460 |
| CviQI | GTAC | 2 cut(s) | 39, 460 |
| DdeI | CTNAG | 2 cut(s) | 265, 1145 |
| DinI | GGCGCC | 1 cut(s) | 954 |
| DpnI | GATC | 7 cut(s) | 245, 362, 381, 447, 857, 901, 1058 |
| DpnII | GATC | 7 cut(s) | 243, 360, 379, 445, 855, 899, 1056 |
| DriI | GACNNNNNGTC | 1 cut(s) | 672 |
| EaeI | YGGCCR | 2 cut(s) | 178, 427 |
| Eam1104I | CTCTTC | 2 cut(s) | 521, 693 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 672 |
| EarI | CTCTTC | 2 cut(s) | 521, 693 |
| Ecl136II | GAGCTC | 1 cut(s) | 424 |
| Eco130I | CCWWGG | 2 cut(s) | 17, 42 |
| Eco24I | GRGCYC | 2 cut(s) | 426, 1004 |
| Eco47I | GGWCC | 4 cut(s) | 414, 476, 740, 924 |
| Eco53kI | GAGCTC | 1 cut(s) | 424 |
| Eco57I | CTGAAG | 3 cut(s) | 255, 426, 717 |
| Eco81I | CCTNAGG | 1 cut(s) | 265 |
| EcoICRI | GAGCTC | 1 cut(s) | 424 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 608 |
| EcoO109I | RGGNCCY | 2 cut(s) | 740, 924 |
| EcoRII | CCWGG | 2 cut(s) | 186, 1122 |
| EcoT14I | CCWWGG | 2 cut(s) | 17, 42 |
| EcoT38I | GRGCYC | 2 cut(s) | 426, 1004 |
| EgeI | GGCGCC | 1 cut(s) | 954 |
| EheI | GGCGCC | 1 cut(s) | 954 |
| ErhI | CCWWGG | 2 cut(s) | 17, 42 |
| FaiI | YATR | 7 cut(s) | 156, 486, 542, 656, 710, 837, 921 |
| FaqI | GGGAC | 2 cut(s) | 474, 753 |
| FauI | CCCGC | 2 cut(s) | 28, 652 |
| FbaI | TGATCA | 1 cut(s) | 855 |
| Fnu4HI | GCNGC | 5 cut(s) | 108, 376, 690, 693, 1120 |
| FokI | GGATG | 2 cut(s) | 383, 896 |
| FriOI | GRGCYC | 2 cut(s) | 426, 1004 |
| Fsp4HI | GCNGC | 5 cut(s) | 108, 376, 690, 693, 1120 |
| GlaI | GCGC | 1 cut(s) | 954 |
| GluI | GCNGC | 5 cut(s) | 108, 376, 690, 693, 1120 |
| GsuI | CTGGAG | 1 cut(s) | 1125 |
| HaeII | RGCGCY | 1 cut(s) | 956 |
| HaeIII | GGCC | 5 cut(s) | 180, 429, 663, 1021, 1119 |
| HapII | CCGG | 5 cut(s) | 591, 800, 956, 1022, 1089 |
| HgaI | GACGC | 1 cut(s) | 662 |
| HhaI | GCGC | 1 cut(s) | 955 |
| Hin1I | GRCGYC | 1 cut(s) | 953 |
| Hin6I | GCGC | 1 cut(s) | 953 |
| HinP1I | GCGC | 1 cut(s) | 953 |
| HincII | GTYRAC | 2 cut(s) | 286, 354 |
| HindII | GTYRAC | 2 cut(s) | 286, 354 |
| HinfI | GANTC | 3 cut(s) | 230, 722, 1025 |
| HpaI | GTTAAC | 1 cut(s) | 286 |
| HpaII | CCGG | 5 cut(s) | 591, 800, 956, 1022, 1089 |
| HphI | GGTGA | 2 cut(s) | 991, 1103 |
| Hpy166II | GTNNAC | 5 cut(s) | 286, 299, 354, 414, 533 |
| Hpy188I | TCNGA | 7 cut(s) | 235, 384, 445, 584, 860, 878, 1030 |
| Hpy188III | TCNNGA | 4 cut(s) | 469, 505, 731, 1060 |
| Hpy8I | GTNNAC | 5 cut(s) | 286, 299, 354, 414, 533 |
| Hpy99I | CGWCG | 2 cut(s) | 506, 678 |
| HpyAV | CCTTC | 6 cut(s) | 158, 502, 604, 1047, 1088, 1132 |
| HpyCH4III | ACNGT | 6 cut(s) | 79, 197, 409, 537, 670, 853 |
| HpyCH4IV | ACGT | 2 cut(s) | 481, 1036 |
| HpyCH4V | TGCA | 7 cut(s) | 56, 95, 227, 257, 574, 634, 895 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 150, 384, 766, 1125 |
| HpyF3I | CTNAG | 2 cut(s) | 265, 1145 |
| HpySE526I | ACGT | 2 cut(s) | 481, 1036 |
| Hsp92I | GRCGYC | 1 cut(s) | 953 |
| HspAI | GCGC | 1 cut(s) | 953 |
| KasI | GGCGCC | 1 cut(s) | 952 |
| KflI | GGGWCCC | 1 cut(s) | 740 |
| KpnI | GGTACC | 1 cut(s) | 42 |
| Ksp22I | TGATCA | 1 cut(s) | 855 |
| KspAI | GTTAAC | 1 cut(s) | 286 |
| Kzo9I | GATC | 7 cut(s) | 243, 360, 379, 445, 855, 899, 1056 |
| LmnI | GCTCC | 2 cut(s) | 341, 384 |
| Lsp1109I | GCAGC | 2 cut(s) | 94, 387 |
| LweI | GCATC | 1 cut(s) | 260 |
| MaeII | ACGT | 2 cut(s) | 481, 1036 |
| MaeIII | GTNAC | 4 cut(s) | 73, 403, 641, 1099 |
| MalI | GATC | 7 cut(s) | 245, 362, 381, 447, 857, 901, 1058 |
| MboI | GATC | 7 cut(s) | 243, 360, 379, 445, 855, 899, 1056 |
| MflI | RGATCY | 1 cut(s) | 899 |
| MhlI | GDGCHC | 2 cut(s) | 426, 1004 |
| MlsI | TGGCCA | 1 cut(s) | 180 |
| MluCI | AATT | 4 cut(s) | 204, 809, 890, 1155 |
| MluNI | TGGCCA | 1 cut(s) | 180 |
| Mly113I | GGCGCC | 1 cut(s) | 953 |
| MmeI | TCCRAC | 2 cut(s) | 350, 562 |
| MnlI | CCTC | 9 cut(s) | 503, 509, 694, 706, 985, 1003, 1006, 1102, 1140 |
| Mox20I | TGGCCA | 1 cut(s) | 180 |
| MroXI | GAANNNNTTC | 2 cut(s) | 316, 809 |
| MscI | TGGCCA | 1 cut(s) | 180 |
| MseI | TTAA | 3 cut(s) | 84, 285, 870 |
| Msp20I | TGGCCA | 1 cut(s) | 180 |
| MspI | CCGG | 5 cut(s) | 591, 800, 956, 1022, 1089 |
| MspR9I | CCNGG | 2 cut(s) | 188, 1124 |
| MvaI | CCWGG | 2 cut(s) | 188, 1124 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 150, 384, 766, 1125 |
| NarI | GGCGCC | 1 cut(s) | 953 |
| NdeII | GATC | 7 cut(s) | 243, 360, 379, 445, 855, 899, 1056 |
| NlaIV | GGNNCC | 6 cut(s) | 40, 741, 742, 926, 954, 1118 |
| NmeAIII | GCCGAG | 1 cut(s) | 405 |
| NmuCI | GTSAC | 3 cut(s) | 403, 641, 1099 |
| PdmI | GAANNNNTTC | 2 cut(s) | 316, 809 |
| PfeI | GAWTC | 3 cut(s) | 230, 722, 1025 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 187 |
| PkrI | GCNGC | 5 cut(s) | 109, 377, 691, 694, 1121 |
| Ple19I | CGATCG | 2 cut(s) | 363, 382 |
| PluTI | GGCGCC | 1 cut(s) | 956 |
| PpuMI | RGGWCCY | 2 cut(s) | 740, 924 |
| Psp124BI | GAGCTC | 1 cut(s) | 426 |
| Psp5II | RGGWCCY | 2 cut(s) | 740, 924 |
| Psp6I | CCWGG | 2 cut(s) | 186, 1122 |
| PspGI | CCWGG | 2 cut(s) | 186, 1122 |
| PspN4I | GGNNCC | 6 cut(s) | 40, 741, 742, 926, 954, 1118 |
| PspPI | GGNCC | 7 cut(s) | 414, 476, 661, 740, 924, 1019, 1117 |
| PspPPI | RGGWCCY | 2 cut(s) | 740, 924 |
| PstNI | CAGNNNCTG | 1 cut(s) | 233 |
| PsuI | RGATCY | 1 cut(s) | 899 |
| PvuI | CGATCG | 2 cut(s) | 363, 382 |
| RsaI | GTAC | 2 cut(s) | 40, 461 |
| RsaNI | GTAC | 2 cut(s) | 39, 460 |
| SacI | GAGCTC | 1 cut(s) | 426 |
| SaqAI | TTAA | 3 cut(s) | 84, 285, 870 |
| SatI | GCNGC | 5 cut(s) | 108, 376, 690, 693, 1120 |
| Sau3AI | GATC | 7 cut(s) | 243, 360, 379, 445, 855, 899, 1056 |
| Sau96I | GGNCC | 7 cut(s) | 414, 476, 661, 740, 924, 1019, 1117 |
| ScrFI | CCNGG | 2 cut(s) | 188, 1124 |
| SduI | GDGCHC | 2 cut(s) | 426, 1004 |
| SfaNI | GCATC | 1 cut(s) | 260 |
| SfcI | CTRYAG | 1 cut(s) | 919 |
| SfoI | GGCGCC | 1 cut(s) | 954 |
| SinI | GGWCC | 4 cut(s) | 414, 476, 740, 924 |
| Sse9I | AATT | 4 cut(s) | 204, 809, 890, 1155 |
| SsiI | CCGC | 7 cut(s) | 35, 659, 689, 692, 769, 841, 1120 |
| SspDI | GGCGCC | 1 cut(s) | 952 |
| SstI | GAGCTC | 1 cut(s) | 426 |
| StyD4I | CCNGG | 2 cut(s) | 186, 1122 |
| StyI | CCWWGG | 2 cut(s) | 17, 42 |
| TaaI | ACNGT | 6 cut(s) | 79, 197, 409, 537, 670, 853 |
| TaiI | ACGT | 2 cut(s) | 484, 1039 |
| TaqI | TCGA | 3 cut(s) | 363, 676, 1059 |
| TasI | AATT | 4 cut(s) | 204, 809, 890, 1155 |
| TauI | GCSGC | 3 cut(s) | 692, 695, 1122 |
| TfiI | GAWTC | 3 cut(s) | 230, 722, 1025 |
| Tru1I | TTAA | 3 cut(s) | 84, 285, 870 |
| Tru9I | TTAA | 3 cut(s) | 84, 285, 870 |
| TscAI | CASTG | 2 cut(s) | 650, 858 |
| TseFI | GTSAC | 3 cut(s) | 403, 641, 1099 |
| TseI | GCWGC | 2 cut(s) | 107, 375 |
| Tsp45I | GTSAC | 3 cut(s) | 403, 641, 1099 |
| TspRI | CASTG | 2 cut(s) | 650, 858 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 187 |
| VpaK11BI | GGWCC | 4 cut(s) | 414, 476, 740, 924 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 608 |
| XapI | RAATTY | 1 cut(s) | 809 |
| XmnI | GAANNNNTTC | 2 cut(s) | 316, 809 |