ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 314 |
| AccIII | TCCGGA | 1 cut(s) | 136 |
| AciI | CCGC | 2 cut(s) | 482, 625 |
| AclWI | GGATC | 3 cut(s) | 55, 564, 787 |
| AcsI | RAATTY | 1 cut(s) | 167 |
| AfeI | AGCGCT | 1 cut(s) | 240 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 178, 510, 560, 915 |
| AgsI | TTSAA | 5 cut(s) | 16, 379, 442, 586, 866 |
| AjnI | CCWGG | 1 cut(s) | 646 |
| AluBI | AGCT | 4 cut(s) | 55, 97, 386, 748 |
| AluI | AGCT | 4 cut(s) | 55, 97, 386, 748 |
| Alw21I | GWGCWC | 1 cut(s) | 899 |
| Alw26I | GTCTC | 1 cut(s) | 494 |
| Alw44I | GTGCAC | 1 cut(s) | 895 |
| AlwI | GGATC | 3 cut(s) | 55, 564, 787 |
| Aor13HI | TCCGGA | 1 cut(s) | 136 |
| Aor51HI | AGCGCT | 1 cut(s) | 240 |
| ApaLI | GTGCAC | 1 cut(s) | 895 |
| ApeKI | GCWGC | 1 cut(s) | 401 |
| ApoI | RAATTY | 1 cut(s) | 167 |
| AspLEI | GCGC | 1 cut(s) | 241 |
| AsuC2I | CCSGG | 2 cut(s) | 311, 505 |
| BaeGI | GKGCMC | 1 cut(s) | 899 |
| BanII | GRGCYC | 1 cut(s) | 578 |
| Bbv12I | GWGCWC | 1 cut(s) | 899 |
| BbvI | GCAGC | 1 cut(s) | 388 |
| BccI | CCATC | 2 cut(s) | 404, 703 |
| BceAI | ACGGC | 1 cut(s) | 638 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 786, 820 |
| BciT130I | CCWGG | 1 cut(s) | 648 |
| BciVI | GTATCC | 1 cut(s) | 426 |
| BcnI | CCSGG | 2 cut(s) | 311, 505 |
| BcoDI | GTCTC | 1 cut(s) | 494 |
| BfaI | CTAG | 2 cut(s) | 98, 276 |
| BfoI | RGCGCY | 1 cut(s) | 242 |
| BfuI | GTATCC | 1 cut(s) | 426 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 622 |
| BisI | GCNGC | 1 cut(s) | 402 |
| BlsI | GCNGC | 1 cut(s) | 403 |
| Bme1390I | CCNGG | 3 cut(s) | 311, 505, 648 |
| BmrFI | CCNGG | 3 cut(s) | 311, 505, 648 |
| BmsI | GCATC | 2 cut(s) | 130, 880 |
| BpmI | CTGGAG | 1 cut(s) | 129 |
| Bpu10I | CCTNAGC | 1 cut(s) | 428 |
| BpuEI | CTTGAG | 1 cut(s) | 317 |
| BpuMI | CCSGG | 2 cut(s) | 311, 505 |
| BsaBI | GATNNNNATC | 1 cut(s) | 345 |
| BsaI | GGTCTC | 1 cut(s) | 494 |
| BsaWI | WCCGGW | 2 cut(s) | 136, 553 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 59, 89 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 178, 510, 560, 915 |
| Bse8I | GATNNNNATC | 1 cut(s) | 345 |
| BseAI | TCCGGA | 1 cut(s) | 136 |
| BseBI | CCWGG | 1 cut(s) | 648 |
| BseGI | GGATG | 2 cut(s) | 145, 695 |
| BseJI | GATNNNNATC | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 178, 510, 560, 915 |
| BseMII | CTCAG | 2 cut(s) | 65, 442 |
| BseRI | GAGGAG | 4 cut(s) | 83, 86, 128, 831 |
| BseSI | GKGCMC | 1 cut(s) | 899 |
| BseXI | GCAGC | 1 cut(s) | 388 |
| BsgI | GTGCAG | 1 cut(s) | 787 |
| Bsh1285I | CGRYCG | 1 cut(s) | 532 |
| BsiEI | CGRYCG | 1 cut(s) | 532 |
| BsiHKAI | GWGCWC | 1 cut(s) | 899 |
| BsiSI | CCGG | 5 cut(s) | 137, 310, 504, 554, 916 |
| BslFI | GGGAC | 1 cut(s) | 41 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 178, 510, 560, 915 |
| BsmAI | GTCTC | 1 cut(s) | 494 |
| BsmFI | GGGAC | 1 cut(s) | 41 |
| BsmI | GAATGC | 1 cut(s) | 723 |
| Bso31I | GGTCTC | 1 cut(s) | 494 |
| Bsp1286I | GDGCHC | 2 cut(s) | 578, 899 |
| Bsp13I | TCCGGA | 1 cut(s) | 136 |
| Bsp143I | GATC | 8 cut(s) | 7, 47, 126, 340, 421, 556, 588, 779 |
| BspACI | CCGC | 2 cut(s) | 482, 625 |
| BspCNI | CTCAG | 2 cut(s) | 64, 441 |
| BspEI | TCCGGA | 1 cut(s) | 136 |
| BspPI | GGATC | 3 cut(s) | 55, 564, 787 |
| BspTNI | GGTCTC | 1 cut(s) | 494 |
| BssMI | GATC | 8 cut(s) | 7, 47, 126, 340, 421, 556, 588, 779 |
| Bst2UI | CCWGG | 1 cut(s) | 648 |
| Bst4CI | ACNGT | 2 cut(s) | 438, 563 |
| Bst6I | CTCTTC | 1 cut(s) | 492 |
| BstC8I | GCNNGC | 1 cut(s) | 895 |
| BstDEI | CTNAG | 2 cut(s) | 51, 428 |
| BstF5I | GGATG | 2 cut(s) | 145, 695 |
| BstH2I | RGCGCY | 1 cut(s) | 242 |
| BstHHI | GCGC | 1 cut(s) | 241 |
| BstKTI | GATC | 8 cut(s) | 10, 50, 129, 343, 424, 559, 591, 782 |
| BstMAI | GTCTC | 1 cut(s) | 494 |
| BstMBI | GATC | 8 cut(s) | 7, 47, 126, 340, 421, 556, 588, 779 |
| BstMCI | CGRYCG | 1 cut(s) | 532 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 392, 401, 622, 794 |
| BstNI | CCWGG | 1 cut(s) | 648 |
| BstSCI | CCNGG | 3 cut(s) | 309, 503, 646 |
| BstSLI | GKGCMC | 1 cut(s) | 899 |
| BstV1I | GCAGC | 1 cut(s) | 388 |
| BstX2I | RGATCY | 1 cut(s) | 47 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 153 |
| BstYI | RGATCY | 1 cut(s) | 47 |
| BsuI | GTATCC | 1 cut(s) | 426 |
| BtsCI | GGATG | 2 cut(s) | 145, 695 |
| BtsIMutI | CAGTG | 1 cut(s) | 789 |
| Cac8I | GCNNGC | 1 cut(s) | 895 |
| CfoI | GCGC | 1 cut(s) | 241 |
| CviAII | CATG | 5 cut(s) | 122, 490, 685, 728, 920 |
| DdeI | CTNAG | 2 cut(s) | 51, 428 |
| DpnI | GATC | 8 cut(s) | 9, 49, 128, 342, 423, 558, 590, 781 |
| DpnII | GATC | 8 cut(s) | 7, 47, 126, 340, 421, 556, 588, 779 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 314 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 314 |
| Eam1104I | CTCTTC | 1 cut(s) | 492 |
| EarI | CTCTTC | 1 cut(s) | 492 |
| Eco24I | GRGCYC | 1 cut(s) | 578 |
| Eco31I | GGTCTC | 1 cut(s) | 494 |
| Eco47III | AGCGCT | 1 cut(s) | 240 |
| EcoRII | CCWGG | 1 cut(s) | 646 |
| EcoT38I | GRGCYC | 1 cut(s) | 578 |
| FaeI | CATG | 5 cut(s) | 125, 493, 688, 731, 923 |
| FaiI | YATR | 9 cut(s) | 65, 123, 339, 491, 580, 654, 686, 729, 921 |
| FaqI | GGGAC | 1 cut(s) | 41 |
| FatI | CATG | 5 cut(s) | 121, 489, 684, 727, 919 |
| FauI | CCCGC | 1 cut(s) | 618 |
| Fnu4HI | GCNGC | 1 cut(s) | 402 |
| FokI | GGATG | 2 cut(s) | 152, 682 |
| FriOI | GRGCYC | 1 cut(s) | 578 |
| Fsp4HI | GCNGC | 1 cut(s) | 402 |
| FspBI | CTAG | 2 cut(s) | 98, 276 |
| GlaI | GCGC | 1 cut(s) | 240 |
| GluI | GCNGC | 1 cut(s) | 402 |
| GsuI | CTGGAG | 1 cut(s) | 129 |
| HaeII | RGCGCY | 1 cut(s) | 242 |
| HapII | CCGG | 5 cut(s) | 137, 310, 504, 554, 916 |
| HhaI | GCGC | 1 cut(s) | 241 |
| Hin1II | CATG | 5 cut(s) | 125, 493, 688, 731, 923 |
| Hin6I | GCGC | 1 cut(s) | 239 |
| HinP1I | GCGC | 1 cut(s) | 239 |
| HindIII | AAGCTT | 1 cut(s) | 384 |
| HinfI | GANTC | 5 cut(s) | 215, 247, 346, 731, 803 |
| HpaII | CCGG | 5 cut(s) | 137, 310, 504, 554, 916 |
| Hpy166II | GTNNAC | 1 cut(s) | 897 |
| Hpy188I | TCNGA | 8 cut(s) | 7, 210, 227, 345, 593, 641, 808, 835 |
| Hpy188III | TCNNGA | 8 cut(s) | 91, 137, 146, 172, 296, 328, 430, 457 |
| Hpy8I | GTNNAC | 1 cut(s) | 897 |
| HpyAV | CCTTC | 8 cut(s) | 103, 205, 265, 334, 709, 770, 806, 841 |
| HpyCH4III | ACNGT | 2 cut(s) | 438, 563 |
| HpyCH4V | TGCA | 4 cut(s) | 60, 404, 768, 897 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 392, 401, 622, 794 |
| HpyF3I | CTNAG | 2 cut(s) | 51, 428 |
| Hsp92II | CATG | 5 cut(s) | 125, 493, 688, 731, 923 |
| HspAI | GCGC | 1 cut(s) | 239 |
| Kpn2I | TCCGGA | 1 cut(s) | 136 |
| Kzo9I | GATC | 8 cut(s) | 7, 47, 126, 340, 421, 556, 588, 779 |
| LmnI | GCTCC | 1 cut(s) | 148 |
| Lsp1109I | GCAGC | 1 cut(s) | 388 |
| LweI | GCATC | 2 cut(s) | 130, 880 |
| MaeI | CTAG | 2 cut(s) | 98, 276 |
| MaeIII | GTNAC | 3 cut(s) | 280, 305, 690 |
| MalI | GATC | 8 cut(s) | 9, 49, 128, 342, 423, 558, 590, 781 |
| MboI | GATC | 8 cut(s) | 7, 47, 126, 340, 421, 556, 588, 779 |
| MboII | GAAGA | 3 cut(s) | 125, 509, 598 |
| MflI | RGATCY | 1 cut(s) | 47 |
| MhlI | GDGCHC | 2 cut(s) | 578, 899 |
| MluCI | AATT | 3 cut(s) | 167, 442, 739 |
| MlyI | GAGTC | 3 cut(s) | 224, 241, 725 |
| MmeI | TCCRAC | 2 cut(s) | 205, 664 |
| MroI | TCCGGA | 1 cut(s) | 136 |
| MspI | CCGG | 5 cut(s) | 137, 310, 504, 554, 916 |
| MspR9I | CCNGG | 3 cut(s) | 311, 505, 648 |
| Mva1269I | GAATGC | 1 cut(s) | 723 |
| MvaI | CCWGG | 1 cut(s) | 648 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 392, 401, 622, 794 |
| NciI | CCSGG | 2 cut(s) | 311, 505 |
| NdeII | GATC | 8 cut(s) | 7, 47, 126, 340, 421, 556, 588, 779 |
| NlaIII | CATG | 5 cut(s) | 125, 493, 688, 731, 923 |
| NmuCI | GTSAC | 1 cut(s) | 305 |
| PctI | GAATGC | 1 cut(s) | 723 |
| PfeI | GAWTC | 2 cut(s) | 346, 803 |
| PfoI | TCCNGGA | 1 cut(s) | 646 |
| PkrI | GCNGC | 1 cut(s) | 403 |
| PleI | GAGTC | 3 cut(s) | 223, 241, 725 |
| PpsI | GAGTC | 3 cut(s) | 223, 241, 725 |
| Psp6I | CCWGG | 1 cut(s) | 646 |
| PspGI | CCWGG | 1 cut(s) | 646 |
| PsuI | RGATCY | 1 cut(s) | 47 |
| SatI | GCNGC | 1 cut(s) | 402 |
| Sau3AI | GATC | 8 cut(s) | 7, 47, 126, 340, 421, 556, 588, 779 |
| SchI | GAGTC | 3 cut(s) | 224, 241, 725 |
| ScrFI | CCNGG | 3 cut(s) | 311, 505, 648 |
| SduI | GDGCHC | 2 cut(s) | 578, 899 |
| SetI | ASST | 4 cut(s) | 57, 99, 388, 750 |
| SfaNI | GCATC | 2 cut(s) | 130, 880 |
| SmlI | CTYRAG | 1 cut(s) | 296 |
| SmoI | CTYRAG | 1 cut(s) | 296 |
| Sse9I | AATT | 3 cut(s) | 167, 442, 739 |
| SsiI | CCGC | 2 cut(s) | 482, 625 |
| SspMI | CTAG | 2 cut(s) | 98, 276 |
| StyD4I | CCNGG | 3 cut(s) | 309, 503, 646 |
| TaaI | ACNGT | 2 cut(s) | 438, 563 |
| TaqI | TCGA | 1 cut(s) | 329 |
| TaqII | GACCGA | 1 cut(s) | 518 |
| TasI | AATT | 3 cut(s) | 167, 442, 739 |
| TfiI | GAWTC | 2 cut(s) | 346, 803 |
| TscAI | CASTG | 1 cut(s) | 789 |
| TseFI | GTSAC | 1 cut(s) | 305 |
| TseI | GCWGC | 1 cut(s) | 401 |
| Tsp45I | GTSAC | 1 cut(s) | 305 |
| TspDTI | ATGAA | 1 cut(s) | 701 |
| TspGWI | ACGGA | 2 cut(s) | 276, 623 |
| TspRI | CASTG | 1 cut(s) | 789 |
| VneI | GTGCAC | 1 cut(s) | 895 |
| XapI | RAATTY | 1 cut(s) | 167 |
| XspI | CTAG | 2 cut(s) | 98, 276 |