ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 14 - 84 | 2.9e-12 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 340 |
| Acc36I | ACCTGC | 1 cut(s) | 340 |
| AccBSI | CCGCTC | 2 cut(s) | 34, 281 |
| AciI | CCGC | 3 cut(s) | 34, 281, 566 |
| AclWI | GGATC | 3 cut(s) | 5, 18, 584 |
| AfaI | GTAC | 1 cut(s) | 520 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 280 |
| AgeI | ACCGGT | 1 cut(s) | 353 |
| AgsI | TTSAA | 3 cut(s) | 208, 454, 533 |
| AjnI | CCWGG | 1 cut(s) | 274 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 20, 52 |
| Alw26I | GTCTC | 1 cut(s) | 289 |
| AlwI | GGATC | 3 cut(s) | 5, 18, 584 |
| AoxI | GGCC | 1 cut(s) | 495 |
| AsiGI | ACCGGT | 1 cut(s) | 353 |
| AspS9I | GGNCC | 1 cut(s) | 496 |
| AsuHPI | GGTGA | 2 cut(s) | 200, 535 |
| AsuII | TTCGAA | 1 cut(s) | 484 |
| BamHI | GGATCC | 1 cut(s) | 10 |
| BanII | GRGCYC | 1 cut(s) | 327 |
| BbsI | GAAGAC | 3 cut(s) | 122, 356, 461 |
| BccI | CCATC | 3 cut(s) | 254, 259, 400 |
| BciT130I | CCWGG | 1 cut(s) | 276 |
| BcoDI | GTCTC | 1 cut(s) | 289 |
| BfuAI | ACCTGC | 1 cut(s) | 340 |
| Bme1390I | CCNGG | 1 cut(s) | 276 |
| BmgT120I | GGNCC | 1 cut(s) | 496 |
| BmiI | GGNNCC | 3 cut(s) | 12, 326, 498 |
| BmrFI | CCNGG | 1 cut(s) | 276 |
| BmsI | GCATC | 2 cut(s) | 496, 550 |
| BpiI | GAAGAC | 3 cut(s) | 122, 356, 461 |
| BpmI | CTGGAG | 1 cut(s) | 297 |
| Bpu14I | TTCGAA | 1 cut(s) | 484 |
| BpuEI | CTTGAG | 1 cut(s) | 121 |
| Bsa29I | ATCGAT | 1 cut(s) | 160 |
| BsaI | GGTCTC | 1 cut(s) | 289 |
| BsaJI | CCNNGG | 3 cut(s) | 120, 218, 274 |
| BsaWI | WCCGGW | 2 cut(s) | 66, 353 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 280 |
| Bse118I | RCCGGY | 2 cut(s) | 192, 353 |
| Bse1I | ACTGG | 1 cut(s) | 427 |
| BseBI | CCWGG | 1 cut(s) | 276 |
| BseCI | ATCGAT | 1 cut(s) | 160 |
| BseDI | CCNNGG | 3 cut(s) | 120, 218, 274 |
| BseGI | GGATG | 3 cut(s) | 34, 270, 411 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 280 |
| BseMII | CTCAG | 1 cut(s) | 174 |
| BseNI | ACTGG | 1 cut(s) | 427 |
| BseRI | GAGGAG | 1 cut(s) | 385 |
| Bsh1285I | CGRYCG | 1 cut(s) | 570 |
| BshFI | GGCC | 1 cut(s) | 497 |
| BshTI | ACCGGT | 1 cut(s) | 353 |
| BshVI | ATCGAT | 1 cut(s) | 160 |
| BsiEI | CGRYCG | 1 cut(s) | 570 |
| BsiSI | CCGG | 3 cut(s) | 67, 193, 354 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 280 |
| BsmAI | GTCTC | 1 cut(s) | 289 |
| BsmI | GAATGC | 1 cut(s) | 492 |
| BsnI | GGCC | 1 cut(s) | 497 |
| Bso31I | GGTCTC | 1 cut(s) | 289 |
| Bsp119I | TTCGAA | 1 cut(s) | 484 |
| Bsp1286I | GDGCHC | 1 cut(s) | 327 |
| Bsp143I | GATC | 3 cut(s) | 10, 157, 576 |
| Bsp19I | CCATGG | 1 cut(s) | 218 |
| BspACI | CCGC | 3 cut(s) | 34, 281, 566 |
| BspANI | GGCC | 1 cut(s) | 497 |
| BspCNI | CTCAG | 1 cut(s) | 175 |
| BspDI | ATCGAT | 1 cut(s) | 160 |
| BspLI | GGNNCC | 3 cut(s) | 12, 326, 498 |
| BspMI | ACCTGC | 1 cut(s) | 340 |
| BspPI | GGATC | 3 cut(s) | 5, 18, 584 |
| BspT104I | TTCGAA | 1 cut(s) | 484 |
| BspTNI | GGTCTC | 1 cut(s) | 289 |
| BsrBI | CCGCTC | 2 cut(s) | 34, 281 |
| BsrFI | RCCGGY | 2 cut(s) | 192, 353 |
| BsrI | ACTGG | 1 cut(s) | 427 |
| BssAI | RCCGGY | 2 cut(s) | 192, 353 |
| BssECI | CCNNGG | 3 cut(s) | 120, 218, 274 |
| BssMI | GATC | 3 cut(s) | 10, 157, 576 |
| BssT1I | CCWWGG | 2 cut(s) | 120, 218 |
| Bst2UI | CCWGG | 1 cut(s) | 276 |
| Bst4CI | ACNGT | 3 cut(s) | 73, 295, 523 |
| Bst6I | CTCTTC | 1 cut(s) | 470 |
| BstBI | TTCGAA | 1 cut(s) | 484 |
| BstDEI | CTNAG | 2 cut(s) | 183, 470 |
| BstDSI | CCRYGG | 1 cut(s) | 218 |
| BstEII | GGTNACC | 1 cut(s) | 188 |
| BstF5I | GGATG | 3 cut(s) | 34, 270, 411 |
| BstKTI | GATC | 3 cut(s) | 13, 160, 579 |
| BstMAI | GTCTC | 1 cut(s) | 289 |
| BstMBI | GATC | 3 cut(s) | 10, 157, 576 |
| BstMCI | CGRYCG | 1 cut(s) | 570 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 242, 563 |
| BstNI | CCWGG | 1 cut(s) | 276 |
| BstPI | GGTNACC | 1 cut(s) | 188 |
| BstSCI | CCNGG | 1 cut(s) | 274 |
| BstV2I | GAAGAC | 3 cut(s) | 122, 356, 461 |
| BstX2I | RGATCY | 1 cut(s) | 10 |
| BstYI | RGATCY | 1 cut(s) | 10 |
| Bsu15I | ATCGAT | 1 cut(s) | 160 |
| BsuRI | GGCC | 1 cut(s) | 497 |
| BsuTUI | ATCGAT | 1 cut(s) | 160 |
| BtgI | CCRYGG | 1 cut(s) | 218 |
| BtsCI | GGATG | 3 cut(s) | 34, 270, 411 |
| BveI | ACCTGC | 1 cut(s) | 340 |
| Cfr10I | RCCGGY | 2 cut(s) | 192, 353 |
| Cfr13I | GGNCC | 1 cut(s) | 496 |
| ClaI | ATCGAT | 1 cut(s) | 160 |
| Csp6I | GTAC | 1 cut(s) | 519 |
| CspAI | ACCGGT | 1 cut(s) | 353 |
| CviAII | CATG | 3 cut(s) | 219, 314, 580 |
| CviJI | RGCY | 3 cut(s) | 245, 325, 497 |
| CviKI_1 | RGCY | 3 cut(s) | 245, 325, 497 |
| CviQI | GTAC | 1 cut(s) | 519 |
| DdeI | CTNAG | 2 cut(s) | 183, 470 |
| DpnI | GATC | 3 cut(s) | 12, 159, 578 |
| DpnII | GATC | 3 cut(s) | 10, 157, 576 |
| DraI | TTTAAA | 1 cut(s) | 178 |
| Eam1104I | CTCTTC | 1 cut(s) | 470 |
| EarI | CTCTTC | 1 cut(s) | 470 |
| Eco130I | CCWWGG | 2 cut(s) | 120, 218 |
| Eco24I | GRGCYC | 1 cut(s) | 327 |
| Eco31I | GGTCTC | 1 cut(s) | 289 |
| Eco91I | GGTNACC | 1 cut(s) | 188 |
| EcoO65I | GGTNACC | 1 cut(s) | 188 |
| EcoRII | CCWGG | 1 cut(s) | 274 |
| EcoT14I | CCWWGG | 2 cut(s) | 120, 218 |
| EcoT38I | GRGCYC | 1 cut(s) | 327 |
| ErhI | CCWWGG | 2 cut(s) | 120, 218 |
| FaeI | CATG | 3 cut(s) | 222, 317, 583 |
| FaiI | YATR | 9 cut(s) | 26, 220, 315, 347, 387, 401, 537, 561, 581 |
| FatI | CATG | 3 cut(s) | 218, 313, 579 |
| FokI | GGATG | 3 cut(s) | 41, 277, 418 |
| FriOI | GRGCYC | 1 cut(s) | 327 |
| GsuI | CTGGAG | 1 cut(s) | 297 |
| HaeIII | GGCC | 1 cut(s) | 497 |
| HapII | CCGG | 3 cut(s) | 67, 193, 354 |
| Hin1II | CATG | 3 cut(s) | 222, 317, 583 |
| HincII | GTYRAC | 1 cut(s) | 271 |
| HindII | GTYRAC | 1 cut(s) | 271 |
| HinfI | GANTC | 2 cut(s) | 83, 310 |
| HpaII | CCGG | 3 cut(s) | 67, 193, 354 |
| HphI | GGTGA | 2 cut(s) | 200, 535 |
| Hpy166II | GTNNAC | 2 cut(s) | 271, 464 |
| Hpy188I | TCNGA | 3 cut(s) | 15, 157, 259 |
| Hpy188III | TCNNGA | 3 cut(s) | 40, 100, 307 |
| Hpy8I | GTNNAC | 2 cut(s) | 271, 464 |
| HpyAV | CCTTC | 1 cut(s) | 202 |
| HpyCH4III | ACNGT | 3 cut(s) | 73, 295, 523 |
| HpyCH4V | TGCA | 1 cut(s) | 490 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 242, 563 |
| HpyF3I | CTNAG | 2 cut(s) | 183, 470 |
| Hsp92II | CATG | 3 cut(s) | 222, 317, 583 |
| Kzo9I | GATC | 3 cut(s) | 10, 157, 576 |
| LmnI | GCTCC | 3 cut(s) | 278, 330, 372 |
| LpnPI | CCDG | 9 cut(s) | 25, 80, 206, 261, 288, 292, 345, 367, 408 |
| LweI | GCATC | 2 cut(s) | 496, 550 |
| MaeIII | GTNAC | 2 cut(s) | 188, 523 |
| MalI | GATC | 3 cut(s) | 12, 159, 578 |
| MbiI | CCGCTC | 2 cut(s) | 34, 281 |
| MboI | GATC | 3 cut(s) | 10, 157, 576 |
| MboII | GAAGA | 5 cut(s) | 127, 361, 466, 487, 536 |
| MfeI | CAATTG | 1 cut(s) | 491 |
| MflI | RGATCY | 1 cut(s) | 10 |
| MhlI | GDGCHC | 1 cut(s) | 327 |
| MluCI | AATT | 2 cut(s) | 438, 491 |
| MlyI | GAGTC | 1 cut(s) | 92 |
| MmeI | TCCRAC | 2 cut(s) | 87, 554 |
| MnlI | CCTC | 4 cut(s) | 118, 178, 363, 477 |
| MseI | TTAA | 1 cut(s) | 177 |
| MspI | CCGG | 3 cut(s) | 67, 193, 354 |
| MspR9I | CCNGG | 1 cut(s) | 276 |
| MunI | CAATTG | 1 cut(s) | 491 |
| Mva1269I | GAATGC | 1 cut(s) | 492 |
| MvaI | CCWGG | 1 cut(s) | 276 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 242, 563 |
| NcoI | CCATGG | 1 cut(s) | 218 |
| NdeII | GATC | 3 cut(s) | 10, 157, 576 |
| NlaIII | CATG | 3 cut(s) | 222, 317, 583 |
| NlaIV | GGNNCC | 3 cut(s) | 12, 326, 498 |
| NmuCI | GTSAC | 2 cut(s) | 188, 523 |
| NspV | TTCGAA | 1 cut(s) | 484 |
| PaqCI | CACCTGC | 1 cut(s) | 340 |
| PctI | GAATGC | 1 cut(s) | 492 |
| PfeI | GAWTC | 1 cut(s) | 310 |
| PinAI | ACCGGT | 1 cut(s) | 353 |
| PleI | GAGTC | 1 cut(s) | 91 |
| PpsI | GAGTC | 1 cut(s) | 91 |
| Psp6I | CCWGG | 1 cut(s) | 274 |
| PspEI | GGTNACC | 1 cut(s) | 188 |
| PspGI | CCWGG | 1 cut(s) | 274 |
| PspN4I | GGNNCC | 3 cut(s) | 12, 326, 498 |
| PspPI | GGNCC | 1 cut(s) | 496 |
| PsuI | RGATCY | 1 cut(s) | 10 |
| RsaI | GTAC | 1 cut(s) | 520 |
| RsaNI | GTAC | 1 cut(s) | 519 |
| SaqAI | TTAA | 1 cut(s) | 177 |
| Sau3AI | GATC | 3 cut(s) | 10, 157, 576 |
| Sau96I | GGNCC | 1 cut(s) | 496 |
| SchI | GAGTC | 1 cut(s) | 92 |
| ScrFI | CCNGG | 1 cut(s) | 276 |
| SduI | GDGCHC | 1 cut(s) | 327 |
| SetI | ASST | 2 cut(s) | 334, 469 |
| SfaNI | GCATC | 2 cut(s) | 496, 550 |
| SfuI | TTCGAA | 1 cut(s) | 484 |
| SmlI | CTYRAG | 1 cut(s) | 100 |
| SmoI | CTYRAG | 1 cut(s) | 100 |
| Sse9I | AATT | 2 cut(s) | 438, 491 |
| SsiI | CCGC | 3 cut(s) | 34, 281, 566 |
| StyD4I | CCNGG | 1 cut(s) | 274 |
| StyI | CCWWGG | 2 cut(s) | 120, 218 |
| TaaI | ACNGT | 3 cut(s) | 73, 295, 523 |
| TaqI | TCGA | 2 cut(s) | 160, 484 |
| TasI | AATT | 2 cut(s) | 438, 491 |
| TfiI | GAWTC | 1 cut(s) | 310 |
| Tru1I | TTAA | 1 cut(s) | 177 |
| Tru9I | TTAA | 1 cut(s) | 177 |
| TseFI | GTSAC | 2 cut(s) | 188, 523 |
| Tsp45I | GTSAC | 2 cut(s) | 188, 523 |
| TspDTI | ATGAA | 2 cut(s) | 302, 362 |
| TspGWI | ACGGA | 1 cut(s) | 432 |