ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 393 |
| AciI | CCGC | 5 cut(s) | 29, 407, 706, 812, 820 |
| AclWI | GGATC | 4 cut(s) | 55, 137, 423, 436 |
| AcyI | GRCGYC | 1 cut(s) | 248 |
| AfaI | GTAC | 3 cut(s) | 36, 229, 341 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 109, 400, 696 |
| AjnI | CCWGG | 3 cut(s) | 120, 499, 689 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 6 cut(s) | 19, 169, 529, 544, 601, 771 |
| AluI | AGCT | 6 cut(s) | 19, 169, 529, 544, 601, 771 |
| AlwI | GGATC | 4 cut(s) | 55, 137, 423, 436 |
| Aor13HI | TCCGGA | 1 cut(s) | 393 |
| AoxI | GGCC | 3 cut(s) | 117, 687, 792 |
| AspA2I | CCTAGG | 1 cut(s) | 275 |
| AspLEI | GCGC | 1 cut(s) | 716 |
| AspS9I | GGNCC | 5 cut(s) | 100, 118, 792, 817, 827 |
| AsuC2I | CCSGG | 1 cut(s) | 683 |
| AsuHPI | GGTGA | 2 cut(s) | 460, 596 |
| AvaII | GGWCC | 3 cut(s) | 100, 817, 827 |
| AvrII | CCTAGG | 1 cut(s) | 275 |
| BamHI | GGATCC | 1 cut(s) | 428 |
| BbvCI | CCTCAGC | 1 cut(s) | 701 |
| BccI | CCATC | 5 cut(s) | 391, 604, 733, 743, 782 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 478, 512 |
| BciT130I | CCWGG | 3 cut(s) | 122, 501, 691 |
| BcnI | CCSGG | 1 cut(s) | 683 |
| BfaI | CTAG | 2 cut(s) | 276, 847 |
| BfoI | RGCGCY | 1 cut(s) | 717 |
| BlnI | CCTAGG | 1 cut(s) | 275 |
| BlpI | GCTNAGC | 1 cut(s) | 15 |
| Bme1390I | CCNGG | 4 cut(s) | 122, 501, 683, 691 |
| Bme18I | GGWCC | 3 cut(s) | 100, 817, 827 |
| BmgT120I | GGNCC | 5 cut(s) | 100, 118, 792, 817, 827 |
| BmiI | GGNNCC | 3 cut(s) | 430, 793, 828 |
| BmrFI | CCNGG | 4 cut(s) | 122, 501, 683, 691 |
| BmsI | GCATC | 2 cut(s) | 205, 524 |
| Bpu10I | CCTNAGC | 1 cut(s) | 701 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 15 |
| BpuMI | CCSGG | 1 cut(s) | 683 |
| Bsa29I | ATCGAT | 1 cut(s) | 786 |
| BsaBI | GATNNNNATC | 1 cut(s) | 147 |
| BsaHI | GRCGYC | 1 cut(s) | 248 |
| BsaJI | CCNNGG | 5 cut(s) | 63, 120, 275, 500, 690 |
| BsaWI | WCCGGW | 2 cut(s) | 393, 606 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 72, 102, 825 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 109, 400, 696 |
| Bse1I | ACTGG | 1 cut(s) | 361 |
| Bse8I | GATNNNNATC | 1 cut(s) | 147 |
| BseAI | TCCGGA | 1 cut(s) | 393 |
| BseBI | CCWGG | 3 cut(s) | 122, 501, 691 |
| BseCI | ATCGAT | 1 cut(s) | 786 |
| BseDI | CCNNGG | 5 cut(s) | 63, 120, 275, 500, 690 |
| BseGI | GGATG | 5 cut(s) | 220, 402, 615, 621, 754 |
| BseJI | GATNNNNATC | 1 cut(s) | 147 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 109, 400, 696 |
| BseMII | CTCAG | 3 cut(s) | 6, 645, 692 |
| BseNI | ACTGG | 1 cut(s) | 361 |
| BseRI | GAGGAG | 6 cut(s) | 125, 128, 362, 416, 758, 833 |
| BshFI | GGCC | 3 cut(s) | 119, 689, 794 |
| BshVI | ATCGAT | 1 cut(s) | 786 |
| BsiSI | CCGG | 3 cut(s) | 394, 607, 682 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 109, 400, 696 |
| BsnI | GGCC | 3 cut(s) | 119, 689, 794 |
| Bsp13I | TCCGGA | 1 cut(s) | 393 |
| Bsp1407I | TGTACA | 1 cut(s) | 339 |
| Bsp143I | GATC | 6 cut(s) | 47, 142, 222, 428, 577, 783 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 15 |
| Bsp19I | CCATGG | 1 cut(s) | 63 |
| BspACI | CCGC | 5 cut(s) | 29, 407, 706, 812, 820 |
| BspANI | GGCC | 3 cut(s) | 119, 689, 794 |
| BspCNI | CTCAG | 3 cut(s) | 7, 646, 693 |
| BspDI | ATCGAT | 1 cut(s) | 786 |
| BspEI | TCCGGA | 1 cut(s) | 393 |
| BspHI | TCATGA | 1 cut(s) | 580 |
| BspLI | GGNNCC | 3 cut(s) | 430, 793, 828 |
| BspPI | GGATC | 4 cut(s) | 55, 137, 423, 436 |
| BsrGI | TGTACA | 1 cut(s) | 339 |
| BsrI | ACTGG | 1 cut(s) | 361 |
| BssECI | CCNNGG | 5 cut(s) | 63, 120, 275, 500, 690 |
| BssMI | GATC | 6 cut(s) | 47, 142, 222, 428, 577, 783 |
| BssNI | GRCGYC | 1 cut(s) | 248 |
| BssT1I | CCWWGG | 2 cut(s) | 63, 275 |
| Bst2UI | CCWGG | 3 cut(s) | 122, 501, 691 |
| Bst4CI | ACNGT | 3 cut(s) | 336, 379, 633 |
| Bst6I | CTCTTC | 1 cut(s) | 729 |
| BstACI | GRCGYC | 1 cut(s) | 248 |
| BstAUI | TGTACA | 1 cut(s) | 339 |
| BstDEI | CTNAG | 4 cut(s) | 15, 162, 654, 701 |
| BstDSI | CCRYGG | 1 cut(s) | 63 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 107 |
| BstF5I | GGATG | 5 cut(s) | 220, 402, 615, 621, 754 |
| BstH2I | RGCGCY | 1 cut(s) | 717 |
| BstHHI | GCGC | 1 cut(s) | 716 |
| BstKTI | GATC | 6 cut(s) | 50, 145, 225, 431, 580, 786 |
| BstMBI | GATC | 6 cut(s) | 47, 142, 222, 428, 577, 783 |
| BstNI | CCWGG | 3 cut(s) | 122, 501, 691 |
| BstSCI | CCNGG | 4 cut(s) | 120, 499, 681, 689 |
| BstX2I | RGATCY | 2 cut(s) | 47, 428 |
| BstYI | RGATCY | 2 cut(s) | 47, 428 |
| Bsu15I | ATCGAT | 1 cut(s) | 786 |
| BsuRI | GGCC | 3 cut(s) | 119, 689, 794 |
| BsuTUI | ATCGAT | 1 cut(s) | 786 |
| BtgI | CCRYGG | 1 cut(s) | 63 |
| BtsCI | GGATG | 5 cut(s) | 220, 402, 615, 621, 754 |
| CciI | TCATGA | 1 cut(s) | 580 |
| CfoI | GCGC | 1 cut(s) | 716 |
| Cfr13I | GGNCC | 5 cut(s) | 100, 118, 792, 817, 827 |
| ClaI | ATCGAT | 1 cut(s) | 786 |
| CseI | GACGC | 1 cut(s) | 256 |
| Csp6I | GTAC | 3 cut(s) | 35, 228, 340 |
| CviAII | CATG | 4 cut(s) | 64, 321, 343, 581 |
| CviQI | GTAC | 3 cut(s) | 35, 228, 340 |
| DdeI | CTNAG | 4 cut(s) | 15, 162, 654, 701 |
| DpnI | GATC | 6 cut(s) | 49, 144, 224, 430, 579, 785 |
| DpnII | GATC | 6 cut(s) | 47, 142, 222, 428, 577, 783 |
| Eam1104I | CTCTTC | 1 cut(s) | 729 |
| EarI | CTCTTC | 1 cut(s) | 729 |
| EciI | GGCGGA | 2 cut(s) | 422, 827 |
| Eco130I | CCWWGG | 2 cut(s) | 63, 275 |
| Eco47I | GGWCC | 3 cut(s) | 100, 817, 827 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 107 |
| EcoO109I | RGGNCCY | 1 cut(s) | 792 |
| EcoRII | CCWGG | 3 cut(s) | 120, 499, 689 |
| EcoT14I | CCWWGG | 2 cut(s) | 63, 275 |
| ErhI | CCWWGG | 2 cut(s) | 63, 275 |
| FaeI | CATG | 4 cut(s) | 67, 324, 346, 584 |
| FaiI | YATR | 9 cut(s) | 65, 212, 322, 344, 425, 540, 582, 597, 779 |
| FatI | CATG | 4 cut(s) | 63, 320, 342, 580 |
| FauI | CCCGC | 1 cut(s) | 22 |
| FokI | GGATG | 5 cut(s) | 227, 409, 622, 628, 761 |
| FspBI | CTAG | 2 cut(s) | 276, 847 |
| GlaI | GCGC | 1 cut(s) | 715 |
| HaeII | RGCGCY | 1 cut(s) | 717 |
| HaeIII | GGCC | 3 cut(s) | 119, 689, 794 |
| HapII | CCGG | 3 cut(s) | 394, 607, 682 |
| HgaI | GACGC | 1 cut(s) | 256 |
| HhaI | GCGC | 1 cut(s) | 716 |
| Hin1I | GRCGYC | 1 cut(s) | 248 |
| Hin1II | CATG | 4 cut(s) | 67, 324, 346, 584 |
| Hin6I | GCGC | 1 cut(s) | 714 |
| HinP1I | GCGC | 1 cut(s) | 714 |
| HincII | GTYRAC | 1 cut(s) | 192 |
| HindII | GTYRAC | 1 cut(s) | 192 |
| HindIII | AAGCTT | 2 cut(s) | 167, 542 |
| HinfI | GANTC | 3 cut(s) | 148, 417, 584 |
| HpaI | GTTAAC | 1 cut(s) | 192 |
| HpaII | CCGG | 3 cut(s) | 394, 607, 682 |
| HphI | GGTGA | 2 cut(s) | 460, 596 |
| Hpy166II | GTNNAC | 3 cut(s) | 37, 192, 246 |
| Hpy188I | TCNGA | 3 cut(s) | 93, 147, 174 |
| Hpy188III | TCNNGA | 5 cut(s) | 103, 394, 548, 581, 677 |
| Hpy8I | GTNNAC | 3 cut(s) | 37, 192, 246 |
| HpyAV | CCTTC | 4 cut(s) | 256, 293, 378, 471 |
| HpyCH4III | ACNGT | 3 cut(s) | 336, 379, 633 |
| HpyCH4IV | ACGT | 1 cut(s) | 434 |
| HpyCH4V | TGCA | 1 cut(s) | 515 |
| HpyF3I | CTNAG | 4 cut(s) | 15, 162, 654, 701 |
| HpySE526I | ACGT | 1 cut(s) | 434 |
| Hsp92I | GRCGYC | 1 cut(s) | 248 |
| Hsp92II | CATG | 4 cut(s) | 67, 324, 346, 584 |
| HspAI | GCGC | 1 cut(s) | 714 |
| Kpn2I | TCCGGA | 1 cut(s) | 393 |
| KspAI | GTTAAC | 1 cut(s) | 192 |
| Kzo9I | GATC | 6 cut(s) | 47, 142, 222, 428, 577, 783 |
| LmnI | GCTCC | 1 cut(s) | 711 |
| LweI | GCATC | 2 cut(s) | 205, 524 |
| MaeI | CTAG | 2 cut(s) | 276, 847 |
| MaeII | ACGT | 1 cut(s) | 434 |
| MalI | GATC | 6 cut(s) | 49, 144, 224, 430, 579, 785 |
| MboI | GATC | 6 cut(s) | 47, 142, 222, 428, 577, 783 |
| MboII | GAAGA | 8 cut(s) | 80, 268, 271, 372, 375, 670, 743, 746 |
| MflI | RGATCY | 2 cut(s) | 47, 428 |
| MluCI | AATT | 3 cut(s) | 95, 312, 589 |
| MlyI | GAGTC | 2 cut(s) | 426, 578 |
| MmeI | TCCRAC | 1 cut(s) | 25 |
| MroI | TCCGGA | 1 cut(s) | 393 |
| MseI | TTAA | 3 cut(s) | 24, 191, 437 |
| MspI | CCGG | 3 cut(s) | 394, 607, 682 |
| MspR9I | CCNGG | 4 cut(s) | 122, 501, 683, 691 |
| MvaI | CCWGG | 3 cut(s) | 122, 501, 691 |
| NciI | CCSGG | 1 cut(s) | 683 |
| NcoI | CCATGG | 1 cut(s) | 63 |
| NdeII | GATC | 6 cut(s) | 47, 142, 222, 428, 577, 783 |
| NlaIII | CATG | 4 cut(s) | 67, 324, 346, 584 |
| NlaIV | GGNNCC | 3 cut(s) | 430, 793, 828 |
| PagI | TCATGA | 1 cut(s) | 580 |
| PfeI | GAWTC | 1 cut(s) | 148 |
| PleI | GAGTC | 2 cut(s) | 425, 578 |
| PpsI | GAGTC | 2 cut(s) | 425, 578 |
| Psp6I | CCWGG | 3 cut(s) | 120, 499, 689 |
| PspGI | CCWGG | 3 cut(s) | 120, 499, 689 |
| PspN4I | GGNNCC | 3 cut(s) | 430, 793, 828 |
| PspPI | GGNCC | 5 cut(s) | 100, 118, 792, 817, 827 |
| PsuI | RGATCY | 2 cut(s) | 47, 428 |
| RsaI | GTAC | 3 cut(s) | 36, 229, 341 |
| RsaNI | GTAC | 3 cut(s) | 35, 228, 340 |
| SaqAI | TTAA | 3 cut(s) | 24, 191, 437 |
| Sau3AI | GATC | 6 cut(s) | 47, 142, 222, 428, 577, 783 |
| Sau96I | GGNCC | 5 cut(s) | 100, 118, 792, 817, 827 |
| SchI | GAGTC | 2 cut(s) | 426, 578 |
| ScrFI | CCNGG | 4 cut(s) | 122, 501, 683, 691 |
| SfaNI | GCATC | 2 cut(s) | 205, 524 |
| SinI | GGWCC | 3 cut(s) | 100, 817, 827 |
| Sse9I | AATT | 3 cut(s) | 95, 312, 589 |
| SsiI | CCGC | 5 cut(s) | 29, 407, 706, 812, 820 |
| SspMI | CTAG | 2 cut(s) | 276, 847 |
| StyD4I | CCNGG | 4 cut(s) | 120, 499, 681, 689 |
| StyI | CCWWGG | 2 cut(s) | 63, 275 |
| TaaI | ACNGT | 3 cut(s) | 336, 379, 633 |
| TaiI | ACGT | 1 cut(s) | 437 |
| TaqI | TCGA | 3 cut(s) | 456, 576, 786 |
| TasI | AATT | 3 cut(s) | 95, 312, 589 |
| TatI | WGTACW | 1 cut(s) | 339 |
| TfiI | GAWTC | 1 cut(s) | 148 |
| Tru1I | TTAA | 3 cut(s) | 24, 191, 437 |
| Tru9I | TTAA | 3 cut(s) | 24, 191, 437 |
| TspDTI | ATGAA | 1 cut(s) | 635 |
| TspGWI | ACGGA | 1 cut(s) | 429 |
| VpaK11BI | GGWCC | 3 cut(s) | 100, 817, 827 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 107 |
| XmaJI | CCTAGG | 1 cut(s) | 275 |
| XspI | CTAG | 2 cut(s) | 276, 847 |