ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 493 |
| AciI | CCGC | 1 cut(s) | 38 |
| AcoI | YGGCCR | 2 cut(s) | 3, 7 |
| AcuI | CTGAAG | 1 cut(s) | 533 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 83 |
| AjiI | CACGTC | 1 cut(s) | 23 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 433, 465 |
| AluBI | AGCT | 2 cut(s) | 14, 160 |
| AluI | AGCT | 2 cut(s) | 14, 160 |
| AoxI | GGCC | 3 cut(s) | 3, 7, 382 |
| AspLEI | GCGC | 1 cut(s) | 28 |
| AspS9I | GGNCC | 1 cut(s) | 166 |
| AsuC2I | CCSGG | 1 cut(s) | 338 |
| AsuHPI | GGTGA | 1 cut(s) | 382 |
| AvaII | GGWCC | 1 cut(s) | 166 |
| BbsI | GAAGAC | 1 cut(s) | 51 |
| BccI | CCATC | 4 cut(s) | 106, 314, 343, 406 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 406, 440 |
| BclI | TGATCA | 1 cut(s) | 54 |
| BcnI | CCSGG | 1 cut(s) | 338 |
| BfmI | CTRYAG | 1 cut(s) | 161 |
| BglII | AGATCT | 1 cut(s) | 363 |
| BisI | GCNGC | 1 cut(s) | 39 |
| BlsI | GCNGC | 1 cut(s) | 40 |
| Bme1390I | CCNGG | 1 cut(s) | 338 |
| Bme18I | GGWCC | 1 cut(s) | 166 |
| BmgBI | CACGTC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 1 cut(s) | 166 |
| BmiI | GGNNCC | 1 cut(s) | 274 |
| BmrFI | CCNGG | 1 cut(s) | 338 |
| BoxI | GACNNNNGTC | 1 cut(s) | 458 |
| BpiI | GAAGAC | 1 cut(s) | 51 |
| BpuMI | CCSGG | 1 cut(s) | 338 |
| BsaJI | CCNNGG | 1 cut(s) | 278 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 83 |
| Bse118I | RCCGGY | 1 cut(s) | 5 |
| BseDI | CCNNGG | 1 cut(s) | 278 |
| BseGI | GGATG | 2 cut(s) | 117, 325 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 83 |
| BseRI | GAGGAG | 1 cut(s) | 368 |
| BseX3I | CGGCCG | 1 cut(s) | 7 |
| BsgI | GTGCAG | 1 cut(s) | 287 |
| Bsh1285I | CGRYCG | 1 cut(s) | 10 |
| BshFI | GGCC | 3 cut(s) | 5, 9, 384 |
| BsiEI | CGRYCG | 1 cut(s) | 10 |
| BsiSI | CCGG | 2 cut(s) | 6, 337 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 83 |
| BsmI | GAATGC | 1 cut(s) | 94 |
| BsnI | GGCC | 3 cut(s) | 5, 9, 384 |
| Bsp143I | GATC | 2 cut(s) | 54, 363 |
| Bsp19I | CCATGG | 1 cut(s) | 278 |
| BspACI | CCGC | 1 cut(s) | 38 |
| BspANI | GGCC | 3 cut(s) | 5, 9, 384 |
| BspLI | GGNNCC | 1 cut(s) | 274 |
| BsrFI | RCCGGY | 1 cut(s) | 5 |
| BssAI | RCCGGY | 1 cut(s) | 5 |
| BssECI | CCNNGG | 1 cut(s) | 278 |
| BssMI | GATC | 2 cut(s) | 54, 363 |
| BssT1I | CCWWGG | 1 cut(s) | 278 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 30 |
| BstDSI | CCRYGG | 1 cut(s) | 278 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 81 |
| BstF5I | GGATG | 2 cut(s) | 117, 325 |
| BstHHI | GCGC | 1 cut(s) | 28 |
| BstKTI | GATC | 2 cut(s) | 57, 366 |
| BstMBI | GATC | 2 cut(s) | 54, 363 |
| BstMCI | CGRYCG | 1 cut(s) | 10 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 38 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 458 |
| BstSCI | CCNGG | 1 cut(s) | 336 |
| BstSFI | CTRYAG | 1 cut(s) | 161 |
| BstV2I | GAAGAC | 1 cut(s) | 51 |
| BstX2I | RGATCY | 1 cut(s) | 363 |
| BstYI | RGATCY | 1 cut(s) | 363 |
| BstZI | CGGCCG | 1 cut(s) | 7 |
| BsuRI | GGCC | 3 cut(s) | 5, 9, 384 |
| BtgI | CCRYGG | 1 cut(s) | 278 |
| BtrI | CACGTC | 1 cut(s) | 23 |
| BtsCI | GGATG | 2 cut(s) | 117, 325 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 30 |
| CfoI | GCGC | 1 cut(s) | 28 |
| Cfr10I | RCCGGY | 1 cut(s) | 5 |
| Cfr13I | GGNCC | 1 cut(s) | 166 |
| CviAII | CATG | 4 cut(s) | 279, 359, 446, 534 |
| CviJI | RGCY | 8 cut(s) | 5, 9, 14, 146, 160, 384, 444, 489 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 9, 14, 146, 160, 384, 444, 489 |
| DpnI | GATC | 2 cut(s) | 56, 365 |
| DpnII | GATC | 2 cut(s) | 54, 363 |
| EaeI | YGGCCR | 2 cut(s) | 3, 7 |
| EagI | CGGCCG | 1 cut(s) | 7 |
| EclXI | CGGCCG | 1 cut(s) | 7 |
| Eco130I | CCWWGG | 1 cut(s) | 278 |
| Eco147I | AGGCCT | 1 cut(s) | 384 |
| Eco47I | GGWCC | 1 cut(s) | 166 |
| Eco52I | CGGCCG | 1 cut(s) | 7 |
| Eco57I | CTGAAG | 1 cut(s) | 533 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 81 |
| EcoO109I | RGGNCCY | 1 cut(s) | 166 |
| EcoT14I | CCWWGG | 1 cut(s) | 278 |
| ErhI | CCWWGG | 1 cut(s) | 278 |
| FaeI | CATG | 4 cut(s) | 282, 362, 449, 537 |
| FatI | CATG | 4 cut(s) | 278, 358, 445, 533 |
| FbaI | TGATCA | 1 cut(s) | 54 |
| FblI | GTMKAC | 1 cut(s) | 493 |
| Fnu4HI | GCNGC | 1 cut(s) | 39 |
| FokI | GGATG | 2 cut(s) | 124, 332 |
| FseI | GGCCGGCC | 1 cut(s) | 9 |
| Fsp4HI | GCNGC | 1 cut(s) | 39 |
| GlaI | GCGC | 1 cut(s) | 27 |
| GluI | GCNGC | 1 cut(s) | 39 |
| HaeIII | GGCC | 3 cut(s) | 5, 9, 384 |
| HapII | CCGG | 2 cut(s) | 6, 337 |
| HhaI | GCGC | 1 cut(s) | 28 |
| Hin1II | CATG | 4 cut(s) | 282, 362, 449, 537 |
| Hin6I | GCGC | 1 cut(s) | 26 |
| HinP1I | GCGC | 1 cut(s) | 26 |
| HinfI | GANTC | 2 cut(s) | 68, 498 |
| HpaII | CCGG | 2 cut(s) | 6, 337 |
| HphI | GGTGA | 1 cut(s) | 382 |
| Hpy166II | GTNNAC | 1 cut(s) | 494 |
| Hpy188I | TCNGA | 4 cut(s) | 244, 331, 464, 503 |
| Hpy188III | TCNNGA | 3 cut(s) | 77, 121, 427 |
| Hpy8I | GTNNAC | 1 cut(s) | 494 |
| Hpy99I | CGWCG | 1 cut(s) | 319 |
| HpyAV | CCTTC | 1 cut(s) | 395 |
| HpyCH4IV | ACGT | 1 cut(s) | 22 |
| HpyCH4V | TGCA | 2 cut(s) | 94, 268 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 38 |
| HpySE526I | ACGT | 1 cut(s) | 22 |
| Hsp92II | CATG | 4 cut(s) | 282, 362, 449, 537 |
| HspAI | GCGC | 1 cut(s) | 26 |
| KroI | GCCGGC | 1 cut(s) | 5 |
| KroNI | GCCGGC | 1 cut(s) | 7 |
| Ksp22I | TGATCA | 1 cut(s) | 54 |
| Kzo9I | GATC | 2 cut(s) | 54, 363 |
| LmnI | GCTCC | 1 cut(s) | 355 |
| MaeII | ACGT | 1 cut(s) | 22 |
| MalI | GATC | 2 cut(s) | 56, 365 |
| MboI | GATC | 2 cut(s) | 54, 363 |
| MboII | GAAGA | 2 cut(s) | 56, 477 |
| MflI | RGATCY | 1 cut(s) | 363 |
| MlyI | GAGTC | 1 cut(s) | 77 |
| MmeI | TCCRAC | 1 cut(s) | 442 |
| MnlI | CCTC | 8 cut(s) | 136, 202, 318, 346, 366, 374, 399, 537 |
| MroNI | GCCGGC | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 153, 402 |
| MspI | CCGG | 2 cut(s) | 6, 337 |
| MspR9I | CCNGG | 1 cut(s) | 338 |
| Mva1269I | GAATGC | 1 cut(s) | 94 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 38 |
| NaeI | GCCGGC | 1 cut(s) | 7 |
| NciI | CCSGG | 1 cut(s) | 338 |
| NcoI | CCATGG | 1 cut(s) | 278 |
| NdeII | GATC | 2 cut(s) | 54, 363 |
| NgoMIV | GCCGGC | 1 cut(s) | 5 |
| NlaIII | CATG | 4 cut(s) | 282, 362, 449, 537 |
| NlaIV | GGNNCC | 1 cut(s) | 274 |
| NmeAIII | GCCGAG | 1 cut(s) | 35 |
| PceI | AGGCCT | 1 cut(s) | 384 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 128 |
| PctI | GAATGC | 1 cut(s) | 94 |
| PdiI | GCCGGC | 1 cut(s) | 7 |
| PfeI | GAWTC | 1 cut(s) | 498 |
| PfoI | TCCNGGA | 1 cut(s) | 336 |
| PkrI | GCNGC | 1 cut(s) | 40 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| PpuMI | RGGWCCY | 1 cut(s) | 166 |
| PshAI | GACNNNNGTC | 1 cut(s) | 458 |
| Psp5II | RGGWCCY | 1 cut(s) | 166 |
| PspN4I | GGNNCC | 1 cut(s) | 274 |
| PspPI | GGNCC | 1 cut(s) | 166 |
| PspPPI | RGGWCCY | 1 cut(s) | 166 |
| PsuI | RGATCY | 1 cut(s) | 363 |
| RigI | GGCCGGCC | 1 cut(s) | 9 |
| SaqAI | TTAA | 2 cut(s) | 153, 402 |
| SatI | GCNGC | 1 cut(s) | 39 |
| Sau3AI | GATC | 2 cut(s) | 54, 363 |
| Sau96I | GGNCC | 1 cut(s) | 166 |
| SchI | GAGTC | 1 cut(s) | 77 |
| ScrFI | CCNGG | 1 cut(s) | 338 |
| SetI | ASST | 5 cut(s) | 16, 25, 162, 171, 329 |
| SfcI | CTRYAG | 1 cut(s) | 161 |
| SinI | GGWCC | 1 cut(s) | 166 |
| SseBI | AGGCCT | 1 cut(s) | 384 |
| SsiI | CCGC | 1 cut(s) | 38 |
| StuI | AGGCCT | 1 cut(s) | 384 |
| StyD4I | CCNGG | 1 cut(s) | 336 |
| StyI | CCWWGG | 1 cut(s) | 278 |
| TaiI | ACGT | 1 cut(s) | 25 |
| TauI | GCSGC | 1 cut(s) | 41 |
| TfiI | GAWTC | 1 cut(s) | 498 |
| Tru1I | TTAA | 2 cut(s) | 153, 402 |
| Tru9I | TTAA | 2 cut(s) | 153, 402 |
| TspDTI | ATGAA | 2 cut(s) | 149, 204 |
| TspGWI | ACGGA | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 1 cut(s) | 166 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 81 |
| XmiI | GTMKAC | 1 cut(s) | 493 |