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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 385 |
| AciI | CCGC | 2 cut(s) | 107, 185 |
| AclWI | GGATC | 6 cut(s) | 116, 129, 254, 315, 377, 390 |
| AcvI | CACGTG | 1 cut(s) | 191 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 209, 281 |
| AgeI | ACCGGT | 1 cut(s) | 266 |
| AgsI | TTSAA | 2 cut(s) | 174, 318 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 290 |
| AlwI | GGATC | 6 cut(s) | 116, 129, 254, 315, 377, 390 |
| Ama87I | CYCGRG | 1 cut(s) | 413 |
| Aor13HI | TCCGGA | 1 cut(s) | 385 |
| AoxI | GGCC | 2 cut(s) | 38, 410 |
| AsiGI | ACCGGT | 1 cut(s) | 266 |
| AspLEI | GCGC | 1 cut(s) | 138 |
| AspS9I | GGNCC | 3 cut(s) | 14, 284, 411 |
| AsuC2I | CCSGG | 2 cut(s) | 12, 275 |
| AsuHPI | GGTGA | 2 cut(s) | 281, 382 |
| AvaI | CYCGRG | 1 cut(s) | 413 |
| AvaII | GGWCC | 2 cut(s) | 14, 284 |
| BaeGI | GKGCMC | 1 cut(s) | 250 |
| BamHI | GGATCC | 2 cut(s) | 121, 382 |
| BbrPI | CACGTG | 1 cut(s) | 191 |
| BbsI | GAAGAC | 1 cut(s) | 286 |
| BccI | CCATC | 1 cut(s) | 79 |
| BciVI | GTATCC | 1 cut(s) | 34 |
| BcnI | CCSGG | 2 cut(s) | 12, 275 |
| BfoI | RGCGCY | 1 cut(s) | 139 |
| BfuI | GTATCC | 1 cut(s) | 34 |
| BisI | GCNGC | 1 cut(s) | 186 |
| BlsI | GCNGC | 1 cut(s) | 187 |
| Bme1390I | CCNGG | 2 cut(s) | 12, 275 |
| Bme18I | GGWCC | 2 cut(s) | 14, 284 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 290 |
| BmeT110I | CYCGRG | 1 cut(s) | 413 |
| BmgT120I | GGNCC | 3 cut(s) | 14, 284, 411 |
| BmiI | GGNNCC | 4 cut(s) | 16, 123, 286, 384 |
| BmrFI | CCNGG | 2 cut(s) | 12, 275 |
| BpiI | GAAGAC | 1 cut(s) | 286 |
| BpuMI | CCSGG | 2 cut(s) | 12, 275 |
| BsaAI | YACGTR | 1 cut(s) | 191 |
| BsaJI | CCNNGG | 1 cut(s) | 288 |
| BsaWI | WCCGGW | 2 cut(s) | 266, 385 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 209, 281 |
| Bse118I | RCCGGY | 2 cut(s) | 146, 266 |
| BseAI | TCCGGA | 1 cut(s) | 385 |
| BseDI | CCNNGG | 1 cut(s) | 288 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 209, 281 |
| BseSI | GKGCMC | 1 cut(s) | 250 |
| BshFI | GGCC | 2 cut(s) | 40, 412 |
| BshTI | ACCGGT | 1 cut(s) | 266 |
| BsiHKCI | CYCGRG | 1 cut(s) | 413 |
| BsiSI | CCGG | 5 cut(s) | 12, 147, 267, 275, 386 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 209, 281 |
| BsnI | GGCC | 2 cut(s) | 40, 412 |
| BsoBI | CYCGRG | 1 cut(s) | 413 |
| Bsp1286I | GDGCHC | 1 cut(s) | 250 |
| Bsp13I | TCCGGA | 1 cut(s) | 385 |
| Bsp143I | GATC | 4 cut(s) | 121, 259, 307, 382 |
| BspACI | CCGC | 2 cut(s) | 107, 185 |
| BspANI | GGCC | 2 cut(s) | 40, 412 |
| BspEI | TCCGGA | 1 cut(s) | 385 |
| BspLI | GGNNCC | 4 cut(s) | 16, 123, 286, 384 |
| BspPI | GGATC | 6 cut(s) | 116, 129, 254, 315, 377, 390 |
| BsrFI | RCCGGY | 2 cut(s) | 146, 266 |
| BssAI | RCCGGY | 2 cut(s) | 146, 266 |
| BssECI | CCNNGG | 1 cut(s) | 288 |
| BssMI | GATC | 4 cut(s) | 121, 259, 307, 382 |
| BssT1I | CCWWGG | 1 cut(s) | 288 |
| Bst4CI | ACNGT | 1 cut(s) | 7 |
| Bst6I | CTCTTC | 1 cut(s) | 342 |
| BstBAI | YACGTR | 1 cut(s) | 191 |
| BstC8I | GCNNGC | 1 cut(s) | 351 |
| BstEII | GGTNACC | 1 cut(s) | 269 |
| BstH2I | RGCGCY | 1 cut(s) | 139 |
| BstHHI | GCGC | 1 cut(s) | 138 |
| BstKTI | GATC | 4 cut(s) | 124, 262, 310, 385 |
| BstMBI | GATC | 4 cut(s) | 121, 259, 307, 382 |
| BstPI | GGTNACC | 1 cut(s) | 269 |
| BstSCI | CCNGG | 2 cut(s) | 10, 273 |
| BstSLI | GKGCMC | 1 cut(s) | 250 |
| BstV2I | GAAGAC | 1 cut(s) | 286 |
| BstX2I | RGATCY | 2 cut(s) | 121, 382 |
| BstYI | RGATCY | 2 cut(s) | 121, 382 |
| BsuI | GTATCC | 1 cut(s) | 34 |
| BsuRI | GGCC | 2 cut(s) | 40, 412 |
| Cac8I | GCNNGC | 1 cut(s) | 351 |
| CfoI | GCGC | 1 cut(s) | 138 |
| Cfr10I | RCCGGY | 2 cut(s) | 146, 266 |
| Cfr13I | GGNCC | 3 cut(s) | 14, 284, 411 |
| CspAI | ACCGGT | 1 cut(s) | 266 |
| CviJI | RGCY | 6 cut(s) | 40, 71, 146, 228, 313, 412 |
| CviKI_1 | RGCY | 6 cut(s) | 40, 71, 146, 228, 313, 412 |
| DpnI | GATC | 4 cut(s) | 123, 261, 309, 384 |
| DpnII | GATC | 4 cut(s) | 121, 259, 307, 382 |
| DriI | GACNNNNNGTC | 1 cut(s) | 290 |
| Eam1104I | CTCTTC | 1 cut(s) | 342 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 290 |
| EarI | CTCTTC | 1 cut(s) | 342 |
| Eco130I | CCWWGG | 1 cut(s) | 288 |
| Eco147I | AGGCCT | 1 cut(s) | 40 |
| Eco47I | GGWCC | 2 cut(s) | 14, 284 |
| Eco72I | CACGTG | 1 cut(s) | 191 |
| Eco88I | CYCGRG | 1 cut(s) | 413 |
| Eco91I | GGTNACC | 1 cut(s) | 269 |
| EcoO65I | GGTNACC | 1 cut(s) | 269 |
| EcoT14I | CCWWGG | 1 cut(s) | 288 |
| ErhI | CCWWGG | 1 cut(s) | 288 |
| FaiI | YATR | 3 cut(s) | 116, 220, 222 |
| FauNDI | CATATG | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 1 cut(s) | 186 |
| Fsp4HI | GCNGC | 1 cut(s) | 186 |
| GlaI | GCGC | 1 cut(s) | 137 |
| GluI | GCNGC | 1 cut(s) | 186 |
| HaeII | RGCGCY | 1 cut(s) | 139 |
| HaeIII | GGCC | 2 cut(s) | 40, 412 |
| HapII | CCGG | 5 cut(s) | 12, 147, 267, 275, 386 |
| HhaI | GCGC | 1 cut(s) | 138 |
| Hin6I | GCGC | 1 cut(s) | 136 |
| HinP1I | GCGC | 1 cut(s) | 136 |
| HinfI | GANTC | 3 cut(s) | 110, 241, 332 |
| HpaII | CCGG | 5 cut(s) | 12, 147, 267, 275, 386 |
| HphI | GGTGA | 2 cut(s) | 281, 382 |
| Hpy166II | GTNNAC | 2 cut(s) | 94, 284 |
| Hpy188I | TCNGA | 2 cut(s) | 28, 382 |
| Hpy188III | TCNNGA | 2 cut(s) | 257, 386 |
| Hpy8I | GTNNAC | 2 cut(s) | 94, 284 |
| HpyAV | CCTTC | 3 cut(s) | 39, 154, 387 |
| HpyCH4III | ACNGT | 1 cut(s) | 7 |
| HpyCH4IV | ACGT | 1 cut(s) | 190 |
| HpySE526I | ACGT | 1 cut(s) | 190 |
| HspAI | GCGC | 1 cut(s) | 136 |
| Kpn2I | TCCGGA | 1 cut(s) | 385 |
| Kzo9I | GATC | 4 cut(s) | 121, 259, 307, 382 |
| LpnPI | CCDG | 6 cut(s) | 25, 160, 280, 288, 388, 399 |
| MaeII | ACGT | 1 cut(s) | 190 |
| MaeIII | GTNAC | 1 cut(s) | 269 |
| MalI | GATC | 4 cut(s) | 123, 261, 309, 384 |
| MboI | GATC | 4 cut(s) | 121, 259, 307, 382 |
| MboII | GAAGA | 2 cut(s) | 286, 329 |
| MflI | RGATCY | 2 cut(s) | 121, 382 |
| MhlI | GDGCHC | 1 cut(s) | 250 |
| MluCI | AATT | 1 cut(s) | 325 |
| MlyI | GAGTC | 3 cut(s) | 104, 250, 326 |
| MmeI | TCCRAC | 2 cut(s) | 33, 152 |
| MnlI | CCTC | 8 cut(s) | 30, 51, 55, 112, 135, 149, 298, 355 |
| MroI | TCCGGA | 1 cut(s) | 385 |
| MseI | TTAA | 1 cut(s) | 180 |
| MspI | CCGG | 5 cut(s) | 12, 147, 267, 275, 386 |
| MspR9I | CCNGG | 2 cut(s) | 12, 275 |
| NciI | CCSGG | 2 cut(s) | 12, 275 |
| NdeI | CATATG | 1 cut(s) | 220 |
| NdeII | GATC | 4 cut(s) | 121, 259, 307, 382 |
| NlaIV | GGNNCC | 4 cut(s) | 16, 123, 286, 384 |
| NmuCI | GTSAC | 1 cut(s) | 269 |
| PceI | AGGCCT | 1 cut(s) | 40 |
| PfoI | TCCNGGA | 1 cut(s) | 10 |
| PinAI | ACCGGT | 1 cut(s) | 266 |
| PkrI | GCNGC | 1 cut(s) | 187 |
| PleI | GAGTC | 3 cut(s) | 104, 249, 326 |
| PmaCI | CACGTG | 1 cut(s) | 191 |
| PmlI | CACGTG | 1 cut(s) | 191 |
| PpsI | GAGTC | 3 cut(s) | 104, 249, 326 |
| Ppu21I | YACGTR | 1 cut(s) | 191 |
| PspCI | CACGTG | 1 cut(s) | 191 |
| PspEI | GGTNACC | 1 cut(s) | 269 |
| PspN4I | GGNNCC | 4 cut(s) | 16, 123, 286, 384 |
| PspPI | GGNCC | 3 cut(s) | 14, 284, 411 |
| PsuI | RGATCY | 2 cut(s) | 121, 382 |
| SaqAI | TTAA | 1 cut(s) | 180 |
| SatI | GCNGC | 1 cut(s) | 186 |
| Sau3AI | GATC | 4 cut(s) | 121, 259, 307, 382 |
| Sau96I | GGNCC | 3 cut(s) | 14, 284, 411 |
| SchI | GAGTC | 3 cut(s) | 104, 250, 326 |
| ScrFI | CCNGG | 2 cut(s) | 12, 275 |
| SduI | GDGCHC | 1 cut(s) | 250 |
| SetI | ASST | 5 cut(s) | 77, 193, 294, 372, 379 |
| SinI | GGWCC | 2 cut(s) | 14, 284 |
| Sse9I | AATT | 1 cut(s) | 325 |
| SseBI | AGGCCT | 1 cut(s) | 40 |
| SsiI | CCGC | 2 cut(s) | 107, 185 |
| StuI | AGGCCT | 1 cut(s) | 40 |
| StyD4I | CCNGG | 2 cut(s) | 10, 273 |
| StyI | CCWWGG | 1 cut(s) | 288 |
| TaaI | ACNGT | 1 cut(s) | 7 |
| TaiI | ACGT | 1 cut(s) | 193 |
| TaqI | TCGA | 2 cut(s) | 43, 330 |
| TasI | AATT | 1 cut(s) | 325 |
| TauI | GCSGC | 1 cut(s) | 188 |
| Tru1I | TTAA | 1 cut(s) | 180 |
| Tru9I | TTAA | 1 cut(s) | 180 |
| TseFI | GTSAC | 1 cut(s) | 269 |
| Tsp45I | GTSAC | 1 cut(s) | 269 |
| TspGWI | ACGGA | 2 cut(s) | 74, 95 |
| VpaK11BI | GGWCC | 2 cut(s) | 14, 284 |