Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 56 - 128 | 7.7e-09 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 472 |
| AccB1I | GGYRCC | 1 cut(s) | 1005 |
| AccII | CGCG | 2 cut(s) | 327, 1069 |
| AciI | CCGC | 9 cut(s) | 238, 327, 531, 969, 1003, 1069, 1451, 1566, 1580 |
| AclWI | GGATC | 6 cut(s) | 126, 137, 398, 620, 1424, 1437 |
| AcoI | YGGCCR | 5 cut(s) | 99, 627, 814, 996, 1405 |
| AcsI | RAATTY | 3 cut(s) | 513, 650, 1209 |
| AcuI | CTGAAG | 2 cut(s) | 116, 861 |
| AcyI | GRCGYC | 1 cut(s) | 1006 |
| AdeI | CACNNNGTG | 1 cut(s) | 51 |
| AfaI | GTAC | 3 cut(s) | 229, 665, 943 |
| AfeI | AGCGCT | 1 cut(s) | 219 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 280, 1579 |
| AgsI | TTSAA | 8 cut(s) | 140, 215, 253, 340, 390, 801, 923, 992 |
| AjnI | CCWGG | 2 cut(s) | 1137, 1465 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 641, 673, 921, 953 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 388, 420 |
| AluBI | AGCT | 5 cut(s) | 187, 434, 717, 974, 1056 |
| AluI | AGCT | 5 cut(s) | 187, 434, 717, 974, 1056 |
| Alw21I | GWGCWC | 2 cut(s) | 370, 1103 |
| Alw26I | GTCTC | 5 cut(s) | 42, 447, 595, 692, 1218 |
| Alw44I | GTGCAC | 2 cut(s) | 366, 1099 |
| AlwI | GGATC | 6 cut(s) | 126, 137, 398, 620, 1424, 1437 |
| Ama87I | CYCGRG | 4 cut(s) | 718, 909, 1143, 1271 |
| Aor51HI | AGCGCT | 1 cut(s) | 219 |
| AoxI | GGCC | 7 cut(s) | 99, 627, 814, 996, 1140, 1172, 1405 |
| ApaLI | GTGCAC | 2 cut(s) | 366, 1099 |
| ApeKI | GCWGC | 2 cut(s) | 1563, 1569 |
| ApoI | RAATTY | 3 cut(s) | 513, 650, 1209 |
| AspLEI | GCGC | 5 cut(s) | 220, 1008, 1465, 1557, 1563 |
| AspS9I | GGNCC | 4 cut(s) | 1125, 1141, 1172, 1469 |
| AsuHPI | GGTGA | 4 cut(s) | 274, 1301, 1340, 1358 |
| AsuII | TTCGAA | 1 cut(s) | 934 |
| AvaI | CYCGRG | 4 cut(s) | 718, 909, 1143, 1271 |
| AvaII | GGWCC | 2 cut(s) | 1125, 1469 |
| BaeGI | GKGCMC | 2 cut(s) | 370, 1103 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 754, 787 |
| BalI | TGGCCA | 5 cut(s) | 101, 629, 816, 998, 1407 |
| BamHI | GGATCC | 1 cut(s) | 1429 |
| BanI | GGYRCC | 1 cut(s) | 1005 |
| BanII | GRGCYC | 1 cut(s) | 1188 |
| BbsI | GAAGAC | 3 cut(s) | 782, 1265, 1361 |
| Bbv12I | GWGCWC | 2 cut(s) | 370, 1103 |
| BbvCI | CCTCAGC | 1 cut(s) | 221 |
| BbvI | GCAGC | 2 cut(s) | 1575, 1581 |
| BccI | CCATC | 7 cut(s) | 58, 603, 806, 946, 956, 1225, 1397 |
| BceAI | ACGGC | 2 cut(s) | 960, 993 |
| BciT130I | CCWGG | 2 cut(s) | 1139, 1467 |
| BciVI | GTATCC | 2 cut(s) | 288, 435 |
| BcoDI | GTCTC | 5 cut(s) | 42, 447, 595, 692, 1218 |
| BfaI | CTAG | 4 cut(s) | 77, 422, 894, 1359 |
| BfoI | RGCGCY | 2 cut(s) | 221, 1009 |
| BfuAI | ACCTGC | 1 cut(s) | 472 |
| BfuI | GTATCC | 2 cut(s) | 288, 435 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1413 |
| BisI | GCNGC | 6 cut(s) | 239, 1004, 1452, 1564, 1567, 1570 |
| BlsI | GCNGC | 6 cut(s) | 240, 1005, 1453, 1565, 1568, 1571 |
| BmcAI | AGTACT | 1 cut(s) | 229 |
| Bme1390I | CCNGG | 2 cut(s) | 1139, 1467 |
| Bme18I | GGWCC | 2 cut(s) | 1125, 1469 |
| BmeT110I | CYCGRG | 4 cut(s) | 718, 909, 1143, 1271 |
| BmgT120I | GGNCC | 4 cut(s) | 1125, 1141, 1172, 1469 |
| BmiI | GGNNCC | 3 cut(s) | 1007, 1126, 1431 |
| BmrFI | CCNGG | 2 cut(s) | 1139, 1467 |
| BmrI | ACTGGG | 1 cut(s) | 817 |
| BmsI | GCATC | 2 cut(s) | 307, 1468 |
| BmuI | ACTGGG | 1 cut(s) | 817 |
| BpiI | GAAGAC | 3 cut(s) | 782, 1265, 1361 |
| BpmI | CTGGAG | 1 cut(s) | 1242 |
| Bpu10I | CCTNAGC | 2 cut(s) | 221, 1182 |
| Bpu14I | TTCGAA | 1 cut(s) | 934 |
| BsaBI | GATNNNNATC | 1 cut(s) | 321 |
| BsaHI | GRCGYC | 1 cut(s) | 1006 |
| BsaI | GGTCTC | 1 cut(s) | 42 |
| BsaJI | CCNNGG | 1 cut(s) | 350 |
| BsaWI | WCCGGW | 1 cut(s) | 291 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 360, 390, 1510, 1534, 1540, 1564 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 280, 1579 |
| Bse1I | ACTGG | 5 cut(s) | 637, 812, 1096, 1267, 1532 |
| Bse8I | GATNNNNATC | 1 cut(s) | 321 |
| BseBI | CCWGG | 2 cut(s) | 1139, 1467 |
| BseDI | CCNNGG | 1 cut(s) | 350 |
| BseGI | GGATG | 7 cut(s) | 69, 115, 817, 889, 1020, 1040, 1408 |
| BseJI | GATNNNNATC | 1 cut(s) | 321 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 280, 1579 |
| BseMII | CTCAG | 5 cut(s) | 212, 906, 1173, 1299, 1437 |
| BseNI | ACTGG | 5 cut(s) | 637, 812, 1096, 1267, 1532 |
| BseRI | GAGGAG | 5 cut(s) | 238, 296, 368, 1120, 1578 |
| BseSI | GKGCMC | 2 cut(s) | 370, 1103 |
| BseXI | GCAGC | 2 cut(s) | 1575, 1581 |
| BsgI | GTGCAG | 1 cut(s) | 28 |
| Bsh1236I | CGCG | 2 cut(s) | 327, 1069 |
| Bsh1285I | CGRYCG | 1 cut(s) | 769 |
| BshFI | GGCC | 7 cut(s) | 101, 629, 816, 998, 1142, 1174, 1407 |
| BshNI | GGYRCC | 1 cut(s) | 1005 |
| BsiEI | CGRYCG | 1 cut(s) | 769 |
| BsiHKAI | GWGCWC | 2 cut(s) | 370, 1103 |
| BsiHKCI | CYCGRG | 4 cut(s) | 718, 909, 1143, 1271 |
| BsiSI | CCGG | 1 cut(s) | 292 |
| BslFI | GGGAC | 1 cut(s) | 33 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 280, 1579 |
| BsmAI | GTCTC | 5 cut(s) | 42, 447, 595, 692, 1218 |
| BsmFI | GGGAC | 1 cut(s) | 33 |
| BsmI | GAATGC | 1 cut(s) | 570 |
| BsnI | GGCC | 7 cut(s) | 101, 629, 816, 998, 1142, 1174, 1407 |
| Bso31I | GGTCTC | 1 cut(s) | 42 |
| BsoBI | CYCGRG | 4 cut(s) | 718, 909, 1143, 1271 |
| Bsp119I | TTCGAA | 1 cut(s) | 934 |
| Bsp1286I | GDGCHC | 3 cut(s) | 370, 1103, 1188 |
| BspACI | CCGC | 9 cut(s) | 238, 327, 531, 969, 1003, 1069, 1451, 1566, 1580 |
| BspANI | GGCC | 7 cut(s) | 101, 629, 816, 998, 1142, 1174, 1407 |
| BspCNI | CTCAG | 5 cut(s) | 213, 907, 1174, 1300, 1438 |
| BspFNI | CGCG | 2 cut(s) | 327, 1069 |
| BspLI | GGNNCC | 3 cut(s) | 1007, 1126, 1431 |
| BspMI | ACCTGC | 1 cut(s) | 472 |
| BspPI | GGATC | 6 cut(s) | 126, 137, 398, 620, 1424, 1437 |
| BspQI | GCTCTTC | 1 cut(s) | 1063 |
| BspT104I | TTCGAA | 1 cut(s) | 934 |
| BspT107I | GGYRCC | 1 cut(s) | 1005 |
| BspTNI | GGTCTC | 1 cut(s) | 42 |
| BsrI | ACTGG | 5 cut(s) | 637, 812, 1096, 1267, 1532 |
| BssECI | CCNNGG | 1 cut(s) | 350 |
| BssNI | GRCGYC | 1 cut(s) | 1006 |
| BssT1I | CCWWGG | 1 cut(s) | 350 |
| Bst2UI | CCWGG | 2 cut(s) | 1139, 1467 |
| Bst4CI | ACNGT | 4 cut(s) | 400, 767, 901, 1082 |
| Bst6I | CTCTTC | 6 cut(s) | 252, 305, 918, 1063, 1317, 1516 |
| BstACI | GRCGYC | 1 cut(s) | 1006 |
| BstBI | TTCGAA | 1 cut(s) | 934 |
| BstC8I | GCNNGC | 2 cut(s) | 1176, 1559 |
| BstDEI | CTNAG | 5 cut(s) | 221, 915, 1182, 1308, 1446 |
| BstF5I | GGATG | 7 cut(s) | 69, 115, 817, 889, 1020, 1040, 1408 |
| BstFNI | CGCG | 2 cut(s) | 327, 1069 |
| BstH2I | RGCGCY | 2 cut(s) | 221, 1009 |
| BstHHI | GCGC | 5 cut(s) | 220, 1008, 1465, 1557, 1563 |
| BstMAI | GTCTC | 5 cut(s) | 42, 447, 595, 692, 1218 |
| BstMCI | CGRYCG | 1 cut(s) | 769 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1413, 1460, 1563, 1569 |
| BstNI | CCWGG | 2 cut(s) | 1139, 1467 |
| BstSCI | CCNGG | 2 cut(s) | 1137, 1465 |
| BstSLI | GKGCMC | 2 cut(s) | 370, 1103 |
| BstUI | CGCG | 2 cut(s) | 327, 1069 |
| BstV1I | GCAGC | 2 cut(s) | 1575, 1581 |
| BstV2I | GAAGAC | 3 cut(s) | 782, 1265, 1361 |
| BstX2I | RGATCY | 3 cut(s) | 118, 142, 1429 |
| BstYI | RGATCY | 3 cut(s) | 118, 142, 1429 |
| BsuI | GTATCC | 2 cut(s) | 288, 435 |
| BsuRI | GGCC | 7 cut(s) | 101, 629, 816, 998, 1142, 1174, 1407 |
| BtsCI | GGATG | 7 cut(s) | 69, 115, 817, 889, 1020, 1040, 1408 |
| BtsI | GCAGTG | 1 cut(s) | 381 |
| BtsIMutI | CAGTG | 4 cut(s) | 381, 630, 1103, 1539 |
| BveI | ACCTGC | 1 cut(s) | 472 |
| Cac8I | GCNNGC | 2 cut(s) | 1176, 1559 |
| CfoI | GCGC | 5 cut(s) | 220, 1008, 1465, 1557, 1563 |
| Cfr13I | GGNCC | 4 cut(s) | 1125, 1141, 1172, 1469 |
| Csp6I | GTAC | 3 cut(s) | 228, 664, 942 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1360, 1395 |
| CviAII | CATG | 2 cut(s) | 710, 1283 |
| CviQI | GTAC | 3 cut(s) | 228, 664, 942 |
| DdeI | CTNAG | 5 cut(s) | 221, 915, 1182, 1308, 1446 |
| DinI | GGCGCC | 1 cut(s) | 1007 |
| DraI | TTTAAA | 1 cut(s) | 1152 |
| DraIII | CACNNNGTG | 1 cut(s) | 51 |
| EaeI | YGGCCR | 5 cut(s) | 99, 627, 814, 996, 1405 |
| Eam1104I | CTCTTC | 6 cut(s) | 252, 305, 918, 1063, 1317, 1516 |
| EarI | CTCTTC | 6 cut(s) | 252, 305, 918, 1063, 1317, 1516 |
| EciI | GGCGGA | 1 cut(s) | 984 |
| Eco130I | CCWWGG | 1 cut(s) | 350 |
| Eco24I | GRGCYC | 1 cut(s) | 1188 |
| Eco31I | GGTCTC | 1 cut(s) | 42 |
| Eco47I | GGWCC | 2 cut(s) | 1125, 1469 |
| Eco47III | AGCGCT | 1 cut(s) | 219 |
| Eco57I | CTGAAG | 2 cut(s) | 116, 861 |
| Eco88I | CYCGRG | 4 cut(s) | 718, 909, 1143, 1271 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1125 |
| EcoRII | CCWGG | 2 cut(s) | 1137, 1465 |
| EcoT14I | CCWWGG | 1 cut(s) | 350 |
| EcoT38I | GRGCYC | 1 cut(s) | 1188 |
| EgeI | GGCGCC | 1 cut(s) | 1007 |
| EheI | GGCGCC | 1 cut(s) | 1007 |
| ErhI | CCWWGG | 1 cut(s) | 350 |
| FaeI | CATG | 2 cut(s) | 713, 1286 |
| FaiI | YATR | 9 cut(s) | 233, 244, 269, 473, 711, 735, 1091, 1284, 1386 |
| FaqI | GGGAC | 1 cut(s) | 33 |
| FatI | CATG | 2 cut(s) | 709, 1282 |
| FauI | CCCGC | 1 cut(s) | 1062 |
| Fnu4HI | GCNGC | 6 cut(s) | 239, 1004, 1452, 1564, 1567, 1570 |
| FokI | GGATG | 7 cut(s) | 76, 122, 824, 896, 1027, 1027, 1415 |
| FriOI | GRGCYC | 1 cut(s) | 1188 |
| Fsp4HI | GCNGC | 6 cut(s) | 239, 1004, 1452, 1564, 1567, 1570 |
| FspBI | CTAG | 4 cut(s) | 77, 422, 894, 1359 |
| GlaI | GCGC | 5 cut(s) | 219, 1007, 1464, 1556, 1562 |
| GluI | GCNGC | 6 cut(s) | 239, 1004, 1452, 1564, 1567, 1570 |
| GsuI | CTGGAG | 1 cut(s) | 1242 |
| HaeII | RGCGCY | 2 cut(s) | 221, 1009 |
| HaeIII | GGCC | 7 cut(s) | 101, 629, 816, 998, 1142, 1174, 1407 |
| HapII | CCGG | 1 cut(s) | 292 |
| HhaI | GCGC | 5 cut(s) | 220, 1008, 1465, 1557, 1563 |
| Hin1I | GRCGYC | 1 cut(s) | 1006 |
| Hin1II | CATG | 2 cut(s) | 713, 1286 |
| Hin6I | GCGC | 5 cut(s) | 218, 1006, 1463, 1555, 1561 |
| HinP1I | GCGC | 5 cut(s) | 218, 1006, 1463, 1555, 1561 |
| HindIII | AAGCTT | 2 cut(s) | 185, 432 |
| HinfI | GANTC | 4 cut(s) | 415, 988, 1073, 1435 |
| HpaII | CCGG | 1 cut(s) | 292 |
| HphI | GGTGA | 4 cut(s) | 274, 1301, 1340, 1358 |
| Hpy166II | GTNNAC | 3 cut(s) | 368, 419, 1101 |
| Hpy188III | TCNNGA | 5 cut(s) | 439, 616, 1221, 1273, 1439 |
| Hpy8I | GTNNAC | 3 cut(s) | 368, 419, 1101 |
| Hpy99I | CGWCG | 1 cut(s) | 1014 |
| HpyAV | CCTTC | 3 cut(s) | 316, 1144, 1450 |
| HpyCH4III | ACNGT | 4 cut(s) | 400, 767, 901, 1082 |
| HpyCH4V | TGCA | 6 cut(s) | 45, 320, 368, 823, 1101, 1481 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1413, 1460, 1563, 1569 |
| HpyF3I | CTNAG | 5 cut(s) | 221, 915, 1182, 1308, 1446 |
| Hsp92I | GRCGYC | 1 cut(s) | 1006 |
| Hsp92II | CATG | 2 cut(s) | 713, 1286 |
| HspAI | GCGC | 5 cut(s) | 218, 1006, 1463, 1555, 1561 |
| KasI | GGCGCC | 1 cut(s) | 1005 |
| LguI | GCTCTTC | 1 cut(s) | 1063 |
| LmnI | GCTCC | 1 cut(s) | 971 |
| Lsp1109I | GCAGC | 2 cut(s) | 1575, 1581 |
| LweI | GCATC | 2 cut(s) | 307, 1468 |
| MaeI | CTAG | 4 cut(s) | 77, 422, 894, 1359 |
| MaeIII | GTNAC | 4 cut(s) | 262, 536, 729, 1289 |
| MfeI | CAATTG | 3 cut(s) | 801, 818, 992 |
| MflI | RGATCY | 3 cut(s) | 118, 142, 1429 |
| MhlI | GDGCHC | 3 cut(s) | 370, 1103, 1188 |
| MlsI | TGGCCA | 5 cut(s) | 101, 629, 816, 998, 1407 |
| MluNI | TGGCCA | 5 cut(s) | 101, 629, 816, 998, 1407 |
| Mly113I | GGCGCC | 1 cut(s) | 1006 |
| MlyI | GAGTC | 1 cut(s) | 424 |
| MmeI | TCCRAC | 3 cut(s) | 752, 992, 1376 |
| Mox20I | TGGCCA | 5 cut(s) | 101, 629, 816, 998, 1407 |
| MscI | TGGCCA | 5 cut(s) | 101, 629, 816, 998, 1407 |
| MseI | TTAA | 3 cut(s) | 980, 1151, 1230 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1287, 1389 |
| Msp20I | TGGCCA | 5 cut(s) | 101, 629, 816, 998, 1407 |
| MspA1I | CMGCKG | 1 cut(s) | 1566 |
| MspI | CCGG | 1 cut(s) | 292 |
| MspR9I | CCNGG | 2 cut(s) | 1139, 1467 |
| MunI | CAATTG | 3 cut(s) | 801, 818, 992 |
| Mva1269I | GAATGC | 1 cut(s) | 570 |
| MvaI | CCWGG | 2 cut(s) | 1139, 1467 |
| MvnI | CGCG | 2 cut(s) | 327, 1069 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1413, 1460, 1563, 1569 |
| NarI | GGCGCC | 1 cut(s) | 1006 |
| NlaIII | CATG | 2 cut(s) | 713, 1286 |
| NlaIV | GGNNCC | 3 cut(s) | 1007, 1126, 1431 |
| NmuCI | GTSAC | 2 cut(s) | 262, 1289 |
| NspV | TTCGAA | 1 cut(s) | 934 |
| PaeR7I | CTCGAG | 1 cut(s) | 1271 |
| PciSI | GCTCTTC | 1 cut(s) | 1063 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 499 |
| PctI | GAATGC | 1 cut(s) | 570 |
| PfeI | GAWTC | 3 cut(s) | 988, 1073, 1435 |
| PflFI | GACNNNGTC | 1 cut(s) | 781 |
| PkrI | GCNGC | 6 cut(s) | 240, 1005, 1453, 1565, 1568, 1571 |
| PleI | GAGTC | 1 cut(s) | 423 |
| PluTI | GGCGCC | 1 cut(s) | 1009 |
| PpsI | GAGTC | 1 cut(s) | 423 |
| PpuMI | RGGWCCY | 1 cut(s) | 1125 |
| Psp5II | RGGWCCY | 1 cut(s) | 1125 |
| Psp6I | CCWGG | 2 cut(s) | 1137, 1465 |
| PspGI | CCWGG | 2 cut(s) | 1137, 1465 |
| PspN4I | GGNNCC | 3 cut(s) | 1007, 1126, 1431 |
| PspPI | GGNCC | 4 cut(s) | 1125, 1141, 1172, 1469 |
| PspPPI | RGGWCCY | 1 cut(s) | 1125 |
| PsuI | RGATCY | 3 cut(s) | 118, 142, 1429 |
| PsyI | GACNNNGTC | 1 cut(s) | 781 |
| RsaI | GTAC | 3 cut(s) | 229, 665, 943 |
| RsaNI | GTAC | 3 cut(s) | 228, 664, 942 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1287, 1389 |
| SapI | GCTCTTC | 1 cut(s) | 1063 |
| SaqAI | TTAA | 3 cut(s) | 980, 1151, 1230 |
| SatI | GCNGC | 6 cut(s) | 239, 1004, 1452, 1564, 1567, 1570 |
| Sau96I | GGNCC | 4 cut(s) | 1125, 1141, 1172, 1469 |
| ScaI | AGTACT | 1 cut(s) | 229 |
| SchI | GAGTC | 1 cut(s) | 424 |
| ScrFI | CCNGG | 2 cut(s) | 1139, 1467 |
| SduI | GDGCHC | 3 cut(s) | 370, 1103, 1188 |
| SfaNI | GCATC | 2 cut(s) | 307, 1468 |
| SfoI | GGCGCC | 1 cut(s) | 1007 |
| Sfr274I | CTCGAG | 1 cut(s) | 1271 |
| SfuI | TTCGAA | 1 cut(s) | 934 |
| SinI | GGWCC | 2 cut(s) | 1125, 1469 |
| SlaI | CTCGAG | 1 cut(s) | 1271 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1287, 1389 |
| SmlI | CTYRAG | 1 cut(s) | 1271 |
| SmoI | CTYRAG | 1 cut(s) | 1271 |
| SsiI | CCGC | 9 cut(s) | 238, 327, 531, 969, 1003, 1069, 1451, 1566, 1580 |
| SspDI | GGCGCC | 1 cut(s) | 1005 |
| SspMI | CTAG | 4 cut(s) | 77, 422, 894, 1359 |
| StyD4I | CCNGG | 2 cut(s) | 1137, 1465 |
| StyI | CCWWGG | 1 cut(s) | 350 |
| TaaI | ACNGT | 4 cut(s) | 400, 767, 901, 1082 |
| TaqI | TCGA | 4 cut(s) | 904, 934, 1272, 1375 |
| TatI | WGTACW | 1 cut(s) | 227 |
| TauI | GCSGC | 4 cut(s) | 241, 1006, 1454, 1569 |
| TfiI | GAWTC | 3 cut(s) | 988, 1073, 1435 |
| Tru1I | TTAA | 3 cut(s) | 980, 1151, 1230 |
| Tru9I | TTAA | 3 cut(s) | 980, 1151, 1230 |
| TscAI | CASTG | 4 cut(s) | 388, 637, 1103, 1539 |
| TseFI | GTSAC | 2 cut(s) | 262, 1289 |
| TseI | GCWGC | 2 cut(s) | 1563, 1569 |
| Tsp45I | GTSAC | 2 cut(s) | 262, 1289 |
| TspDTI | ATGAA | 4 cut(s) | 248, 460, 1029, 1476 |
| TspGWI | ACGGA | 2 cut(s) | 555, 998 |
| TspRI | CASTG | 4 cut(s) | 388, 637, 1103, 1539 |
| Tth111I | GACNNNGTC | 1 cut(s) | 781 |
| VneI | GTGCAC | 2 cut(s) | 366, 1099 |
| VpaK11BI | GGWCC | 2 cut(s) | 1125, 1469 |
| XapI | RAATTY | 3 cut(s) | 513, 650, 1209 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 109 |
| XhoI | CTCGAG | 1 cut(s) | 1271 |
| XspI | CTAG | 4 cut(s) | 77, 422, 894, 1359 |
| ZrmI | AGTACT | 1 cut(s) | 229 |